EsuBft981_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft981_8a-0001
Unique NameEsuBft981_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:325205..325495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft981_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length29
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft981_8aEsuBft981_8aEctocarpus subulatus male Bft15bgeneScaffold_347 325205..325495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_8a-0001-exonEsuBft981_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 325205..325495 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_8a-0001-exonagat-three_prime_utr-23764Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 325205..325342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_8a-0001-cdsEsuBft981_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 325343..325495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_8a-0001EsuBft981_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 325343..325495 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft981_8a-0001 ID=EsuBft981_8a-0001|Name=EsuBft981_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=291bp|location=Sequence derived from alignment at Scaffold_347:325205..325495- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCAGGATTAAATGAGAAATACCGGCTGTTCGTTCCGACCTTCTG
TAGCCGTAGCCACCACCTCTGCACTTGTACACGAGTCCGAGTTGCTTGCA
ATGTGGTGTACTTTCCTCTGGCAATGTACGTTTGCGTAGAACAGATTAGA
TAATTAGATTATGTCCTGTCCAAGTGTTCCATGTTCCGTATATGACCAGG
CGTGTATGGAAGTAAAGTTAACTTTGATCTCGTATGTAACATGGCGACAT
TGCCAATCTTCGCATCAGCCGACCTACGCTGCAGCTATGGT
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protein sequence of EsuBft981_8a-0001

>EsuBft981_8 ID=EsuBft981_8|Name=EsuBft981_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MKPGLNEKYRLFVPTFCSRSHHLCTCTRVRVACNVVYFPLAMYVCVEQIR
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mRNA from alignment at Scaffold_347:325205..325495-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft981_8a-0001 ID=EsuBft981_8a-0001|Name=EsuBft981_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=291bp|location=Sequence derived from alignment at Scaffold_347:325205..325495- (Ectocarpus subulatus male Bft15b)
ATGAAACCAGGATTAAATGAGAAATACCGGCTGTTCGTTCCGACCTTCTG
TAGCCGTAGCCACCACCTCTGCACTTGTACACGAGTCCGAGTTGCTTGCA
ATGTGGTGTACTTTCCTCTGGCAATGTACGTTTGCGTAGAACAGATTAGA
TAATTAGATTATGTCCTGTCCAAGTGTTCCATGTTCCGTATATGACCAGG
CGTGTATGGAAGTAAAGTTAACTTTGATCTCGTATGTAACATGGCGACAT
TGCCAATCTTCGCATCAGCCGACCTACGCTGCAGCTATGGT
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Coding sequence (CDS) from alignment at Scaffold_347:325205..325495-

>EsuBft981_8a-0001 ID=EsuBft981_8a-0001|Name=EsuBft981_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_347:325205..325495- (Ectocarpus subulatus male Bft15b)
ATGAAACCAGGATTAAATGAGAAATACCGGCTGTTCGTTCCGACCTTCTG
TAGCCGTAGCCACCACCTCTGCACTTGTACACGAGTCCGAGTTGCTTGCA
ATGTGGTGTACTTTCCTCTGGCAATGTACGTTTGCGTAGAACAGATTAGA
TAA
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