Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4098.XP_009594755.1 |
| ProteomeId | EsuBft2064_5 |
| Protein domains | Coil |
| Protein domains | IPR005135 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 115 |
| Evalue | 0.000161 |
| EggNOG OGs | 2E2QZ@1|root,2S9XW@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2064_5a-0001 ID=EsuBft2064_5a-0001|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_347:30916..32070- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACAACAACGGGGAACAACTCCTTAGACTAGCATCAGAAAACCAACT
CTCCCCGACCAACACCTACTTCCGGACACCGAATGGTAAAGTGCAGCACA
CATTCCAGAGCTTCAACGAGGGGAAGGAGAAGTACCGCCTCGACTTCATC
CTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAAACG
TGTCGACTTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCC
TCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGC
AGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACG
GGTCCACTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCA
GGCGGCCAACGGGAGAGACACCCGCCGAGCTGACGGCCACGGTGATGTCG
GCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGAGGCGACCCTTAAGGCGATGCTCAAGGCGGCG
CGAAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGA
GGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTC
ACCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCTC
ACGTGCGTGCCACTCGACGACATCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN back to topprotein sequence of EsuBft2064_5a-0001 >EsuBft2064_5 ID=EsuBft2064_5|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=359bp
MNNNGEQLLRLASENQLSPTNTYFRTPNGKVQHTFQSFNEGKEKYRLDFI
LMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGS
SRIRIDLERLRKDKHLRVHFQNRASSRPPPTALRRPTGETPAELTATVMS
AAAETAPLARCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATLKAMLKAA
RKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSF
TSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWL
TCVPLDDIX back to topmRNA from alignment at Scaffold_347:30916..32070- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2064_5a-0001 ID=EsuBft2064_5a-0001|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_347:30916..32070- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGGGGAACAACTCCTTAGACTAGCATCAGAAAACCAACT
CTCCCCGACCAACACCTACTTCCGGACACCGAATGGTAAAGTGCAGCACA
CATTCCAGAGCTTCAACGAGGGGAAGGAGAAGTACCGCCTCGACTTCATC
CTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAAACG
TGTCGACTTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCC
TCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGC
AGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACG
GGTCCACTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCA
GGCGGCCAACGGGAGAGACACCCGCCGAGCTGACGGCCACGGTGATGTCG
GCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGAGGCGACCCTTAAGGCGATGCTCAAGGCGGCG
CGAAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGA
GGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTC
ACCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCTC
ACGTGCGTGCCACTCGACGACATCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN back to topCoding sequence (CDS) from alignment at Scaffold_347:30916..32070- >EsuBft2064_5a-0001 ID=EsuBft2064_5a-0001|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1077bp|location=Sequence derived from alignment at Scaffold_347:30916..32070- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGGGGAACAACTCCTTAGACTAGCATCAGAAAACCAACT
CTCCCCGACCAACACCTACTTCCGGACACCGAATGGTAAAGTGCAGCACA
CATTCCAGAGCTTCAACGAGGGGAAGGAGAAGTACCGCCTCGACTTCATC
CTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAAACG
TGTCGACTTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCC
TCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGC
AGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACG
GGTCCACTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCA
GGCGGCCAACGGGAGAGACACCCGCCGAGCTGACGGCCACGGTGATGTCG
GCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGAGGCGACCCTTAAGGCGATGCTCAAGGCGGCG
CGAAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGA
GGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTC
ACCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCTC
ACGTGCGTGCCACTCGACGACATCNNN back to top
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