EsuBft893_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft893_7a-0001
Unique Name	EsuBft893_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_1228	contig	Scaffold_1228:86866..91426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft893_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	92
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft893_7a	EsuBft893_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_1228 86866..91426 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_7a-0001	EsuBft893_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_1228 90404..90860 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_7a-0001-exon	agat-exon-26476	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 86866..86976 +
EsuBft893_7a-0001-exon	EsuBft893_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 90294..90484 +
EsuBft893_7a-0001-exon	agat-exon-26475	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 90807..91426 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_7a-0001-exon	agat-five_prime_utr-14788	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_1228 86866..86976 +
EsuBft893_7a-0001-exon	agat-five_prime_utr-14789	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_1228 90294..90403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_7a-0001-cds	EsuBft893_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_1228 90404..90484 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_7a-0001-exon	agat-three_prime_utr-22816	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1228 90861..91426 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_1228:86866..91426+
coding sequence from alignment at Scaffold_1228:86866..91426+

spliced messenger RNA

>EsuBft893_7a-0001 ID=EsuBft893_7a-0001|Name=EsuBft893_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=922bp|location=Sequence derived from alignment at Scaffold_1228:86866..91426+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGTGTGGCGAGCTTGGCACGGGAGCGAATGCCTTCGCGGACAGCAGA
AGGACAGTAGCGAGCGCGGGAGTTCCCCTTCCCGGGTCGGTGGCACCCGC
TGTGTCTTACGGAACACAGAGAAAGGGTGGCCGGGGAGGCACGAGCGTCG
AGGGGGAGCGGTTGGTCAACGCACTCACCTTCGGGTCATTGGGAAGTGGT
ACCAACAAGGTGTATCGAAGGATGTGGAACACGTGGAAGGAGGCTCGAGC
AGGGGCGGGTTCGGGCCCGTGGCTCCGCGACAGCGATGGGGTGGAAAGTG
CGCCTCAGAAATCTGGGCGGACGACTCGGGGCTCGTGCACTCGGATTTTT
GTCTGACAAGAGGAGACCTGGGTTTCTTTTGCGGTCCGGTAAGGGTTGCA
TGGGCAGACCGGAGGCAGGCCAGCCGAGTGGAAGTCACGTTCAGAGCGTC
AAGAGGAGATCGAAAACGTTTGGGAGCAGCCGTCACTAGATCGGAAGAAG
CGTTGAAGGTGTTACTCGATCTGTTAGATCTGCACCCCGAGCTCGGGAGT
CATGCGCCGTTGATGCAATCGTGGGCACAAGACAGGTGGAAGGTGATTTC
GAGGCCAGAGGCATCGAGACACCTCAGGTTACTCGTGAGTGCGGCGGGTA
GAGACCCACAGAAGTATGCGTTGCATTCAGGAAGGGTCGGGGGGGCCACG
CATCTAGCAAGTATGGGGGCGTCGGTGATTCAGATCCAGAGAGCCGGGAG
GTGGAAATCATCGGCTTTTATGGTGTATGTTAGGGCGGGGGGTGAAGGAG
CAAAGTTTGTGTCTCAGGCCCTTACGGAACCCGAGGAGTGACCTGGGAGC
GGTTCGGAGGAGTAGGTCATCGGACATGCCTAATGGAGTAAGATATGTTT
AGGCCAGAGGCCGAAACAATAG

protein sequence of EsuBft893_7a-0001

>EsuBft893_7 ID=EsuBft893_7|Name=EsuBft893_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=44bp
MWNTWKEARAGAGSGPWLRDSDGVESAPQKSGRTTRGSCTRIFV

mRNA from alignment at Scaffold_1228:86866..91426+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft893_7a-0001 ID=EsuBft893_7a-0001|Name=EsuBft893_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4561bp|location=Sequence derived from alignment at Scaffold_1228:86866..91426+ (Ectocarpus subulatus male Bft15b)
GGGGGTGTGGCGAGCTTGGCACGGGAGCGAATGCCTTCGCGGACAGCAGA
AGGACAGTAGCGAGCGCGGGAGTTCCCCTTCCCGGGTCGGTGGCACCCGC
TGTGTCTTACGGTGAGAGCATGAGTTGCGAACCTGTCATTTCCCACACTG
TTAACTGTTCGGATTCGGTTTCGCCTTGCATAGTGGCGGACACCACTCAT
GCCGAAACGTCACAAACAGTAGCTACGGGGGCGGACACCCTCGGTGCCAT
GTACGGGTCAAATAACACACAAGCGGAGGACACCGCACGGGTGATAGATG
AGTCAAAACTATTGGCGGACACCAATTGTGCGAATACTGACACACACCGG
GCGGACACCCGGTGTGAACATGCATTACCCTCACTCTCGCAAACGGTGGA
CGCCGTTCCCGCGAAAATCTCAGTAACGGAATACCTATTAGCGGACACCA
ATAGCGGGATCAATTACTGCTCTGCCTTGTACACCACGAAGACTGTGGCG
GACACCACACGTGCTGAACATTGCAATGCAGTCGCCTCGGGGGCGGACAC
CCCGGGCGGATGTAATTGGCCCCGTGGCACGCAAGCGGTGGACGCCGCGA
GCGTTGTCGGTAAACAAAAAATACTGGCGGACACCAGTAGTGTGCAGAAG
GTCATACACAGGGCGGACACCCTGCGTAAGAATTTGTCAGTCACACAGCC
CCGATTGGCGGACACCATTCGCGGGTACGATACGGAATTGGCGGACACCA
TGACCGTGTCAAAAGCTCTCCCGGGGGCGGACACCCCGGGGGAAGCACTG
TTGGCACGTAGGGCACTAGCGGCGGACACTGCTAGGGCCGCTGACATCAC
AGAAGTAATGCGACATGATTGCGGGTCGAATTCAACGACTTCTCACTTTG
GGGCGGGGAAAGATCCTTCGGCCCTAGAGAGTCCAAAAAATACAACCTTG
TCGGAAAATTCAAAAACTCTGACCGATAGACTCGAGGAACAGAGAAGCAG
ACTCGCGTCAAGCACACACTCACTAGACGAGAAGCGATGCATCATTCGGA
AGATGGCGGACATTGGTAGTGATTTGGAAAGCTCCACGATGGAAGGCTGG
GAGACGTCGCGAGGGGAATCGGCGGCACTTTGGTGTCACCGCCGTTGGAC
GTGAGCGACGTCAAGCAGTATTTCGGAGAGGAGAAGGGCTTTCCGGGTAT
CGACGACCTCATTGAGATAGTCGGCGAAGGAGCCCCGGCCCCCACTCTAG
ACTCGCAGCAAAACCTTAAGAAAGCCTTGGCATACGGCAACCACCGTAGC
GTAGACGAACACCAAACGCAAGTGTGGGAAAAACTATGCGACGATGTCAA
GCGATACAGGTGTATCGTCCTGAGAAAGGCGAACGCGTCGGACGTACGTG
GGATCAGAGTAGCCCCGTTGGGAGCGGTCCCAGGGAAAAAAGTGAGGATC
ATCAACGACTTCTCTTTTGACCCAAGCACTAGCAAGGGGTCAAAAGGTGG
GCTCAACAAAGATACCATTATGTCCGGAGTTCCACGTTGCCTGTGCGGCG
AAGCCCTACCAGCTTTCCTCGAGGAGCTCACTAGCCTACGAGTAAGATGG
CCAGACAAGAGAATCCTCGCAGCCAAGGCTGATGTCACCTCTGCGTTCAG
AAATGTGAGGATATCACCAGATCATGCACACAACTTTTTGCTACGTGATA
GGAGACGTGCTAGTAGCGGATCTACGGCTGACCTTTGGCTGGGTAGCGTC
ACCAGGATTGTGGGGTGTGTTAGCCTCCGCTGCAGAGCACTCGCACCGCA
ACACGTCCCTCGCGAACGCTCGACTACTACCAGAAGGAATCGCAATGATG
TCCCACGTGAAAAAAAACCTCCTTGGGAAAAAGGCACCCCAACCTCAATA
CCATCGTCGGCAGGCTTAAGACCGCGTAGAGGCGGGGGACCCGCGGACGA
TTTCTTGGCCAGGGTCTACGTTGACGATTTCTTGCTCACGAAGGTCCAGC
ATGACCCCACTGACCAATCGGCACTCATTGCGTCCGCCTCACTAGCGTCA
GACCATGTCAGACTGTTTGGCAAGGGAGAACTCGGAGAAGCCCCCATTCT
CGCCCCGAAAAAGAGCACTGACTGGCACACGGTCATAGAGGCCCTGGGGT
ACATCAAAGATACGCATGCTGGCAGAATTGCAACTACACTGGAAACGGTA
AGCGCGATTCGGAACATACTAGAGACAGATTGGCCTCACGATAGAAAGAA
GGCCAGTGTTCAAGAAGTCCTCAGCATTGCAGGAAAACTGTGGAACCTCA
CTTATGTTATCAGGGCCGGTAGGTACTTCGTGTGGCAACTGCTCCGCCTA
TCGGGTCTGCATACGCAGGCCAGTCGACACACACGGTCACGACGACTAGT
CGACTTGGGTAGAGAGTTCCACGGCGATATCGCCTTCTGGAAGTGGGCCC
TCAATCAGCCACTGGCACTTCGAGGGGAGTCCCTCAGCGCATCGTTCCTA
CTACACGTAAAACGAGCACCATCACCCCTTTACCTCTCAGACGCTAGCTT
CACAGCGATTGGCGGCTACTGTCCCGAACTAAAGATTTTCTGGAGATACA
CGATCGACTCATCGTTGTCTGCGGAGCTCAAGCGCAAGGCGCAGGAGAAG
GAGACGTCGGACATTACGATCAATCTGTTAGAACTCGCGGGCATGTTCAT
GACGGCGTGGGTAGTCCAAATGATCTTGAAAGACAGAACCTGTAGAAGAA
GGGCAGTCGGTGTTGATGCGTGGAGACAACGTGTCGGCCGTCAGTTGGAC
TAACAGGTGTGGGGGATCGCGTGACAGGTGCGCTAGCCTCATAATGAGAC
TCATGGGTAGGGTGAAAATTTCTTGCGGCTGGTGCCACGTGGCCAAGCAA
ATCCCTGGTCGAAAGAACACACTTGCGGACGGGATCTCACGCTGGGAAGA
AAACGAGATCGCCGCCAACGTGAAAATGCTCACAAAAGACTCAGGGTGGA
CACAGCAGGATATTGGAGAAGGGGGACGAGCGTTGCTCAGCCTTATCCTT
CAAAAGAAATTGCCGAAAGAAAGTCTGGACGACTCGGTATGGGACATTAT
GGTCCATGGATCAGAAAATATCTGACACGGCAGAAGGGGCGGATGGACAC
CGCTCCGTGTTTTTCCGGACGATCAACGAATCATCAAACGAAATGAGATA
GCGAGAAGTTGGAGCGGTGGACACGCCTCAATTTCACTGTTTCATGACGC
CTTGATAAAATGGATAGCCAGGGGAGGCAGAGTTGGTTTGGACGACCAAG
TTTTTCTGTTCTCCCTTCAACCCAAGTCGGGGCTATCCACGGTTTCGGCA
TGAACTTGTCGTACCTTGGAAAGGAACCTCGAAATGTGTCATTCCCCACG
CTGTACATACCCGATGATTGAATATCAGGAACACAGAGAAAGGGTGGCCG
GGGAGGCACGAGCGTCGAGGGGGAGCGGTTGGTCAACGCACTCACCTTCG
GGTCATTGGGAAGTGGTACCAACAAGGTGTATCGAAGGATGTGGAACACG
TGGAAGGAGGCTCGAGCAGGGGCGGGTTCGGGCCCGTGGCTCCGCGACAG
CGATGGGGTGGAAAGTGCGGTGCGTGAGCTGTCTGTGTTTATGGCTTGCC
GGTGTTTCGGCCACAAGAACCAGAGTCAGACTATCCGCGGGTATCTCTCA
GCCGTCAAGTACTTCCATAAGATGCACGCAGGATGGGAGTTGCCCACTTC
GCATTTCCAGATCCTTGCCATGTTGAAGACCATTGATAGGGTCCACGCCA
ATACGCAGACGAAGCCTAAGGTTAGGAATCCACTTTCTTGGGACATGCTA
GAGGCTGGAAAGTGCGTGGTCGAAAATTCGGGAGAATCAGGGAAGTTGAT
CTGGTGTGGACTTGCCCTCTCGTACTTGCTGATGTGCCGAGCCTCAGAAA
TCTGGGCGGACGACTCGGGGCTCGTGCACTCGGATTTTTGTCTGACAAGA
GGAGACCTGGGTTTCTTTTGCGGTCCGGTAAGGGTTGCATGGGCAGACCG
GAGGCAGGCCAGCCGAGTGGAAGTCACGTTCAGAGCGTCAAGAGGAGATC
GAAAACGTTTGGGAGCAGCCGTCACTAGATCGGAAGAAGCGTTGAAGGTG
TTACTCGATCTGTTAGATCTGCACCCCGAGCTCGGGAGTCATGCGCCGTT
GATGCAATCGTGGGCACAAGACAGGTGGAAGGTGATTTCGAGGCCAGAGG
CATCGAGACACCTCAGGTTACTCGTGAGTGCGGCGGGTAGAGACCCACAG
AAGTATGCGTTGCATTCAGGAAGGGTCGGGGGGGCCACGCATCTAGCAAG
TATGGGGGCGTCGGTGATTCAGATCCAGAGAGCCGGGAGGTGGAAATCAT
CGGCTTTTATGGTGTATGTTAGGGCGGGGGGTGAAGGAGCAAAGTTTGTG
TCTCAGGCCCTTACGGAACCCGAGGAGTGACCTGGGAGCGGTTCGGAGGA
GTAGGTCATCGGACATGCCTAATGGAGTAAGATATGTTTAGGCCAGAGGC
CGAAACAATAG

Coding sequence (CDS) from alignment at Scaffold_1228:86866..91426+

>EsuBft893_7a-0001 ID=EsuBft893_7a-0001|Name=EsuBft893_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=135bp|location=Sequence derived from alignment at Scaffold_1228:86866..91426+ (Ectocarpus subulatus male Bft15b)
ATGTGGAACACGTGGAAGGAGGCTCGAGCAGGGGCGGGTTCGGGCCCGTG
GCTCCGCGACAGCGATGGGGTGGAAAGTGCGCCTCAGAAATCTGGGCGGA
CGACTCGGGGCTCGTGCACTCGGATTTTTGTCTGA