EsuBft893_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft893_6a-0001
Unique Name	EsuBft893_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_1228	contig	Scaffold_1228:74394..79506 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft893_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	57
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft893_6a	EsuBft893_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_1228 74394..79506 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_6a-0001-exon	EsuBft893_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 74394..74501 -
EsuBft893_6a-0001-exon	agat-exon-26474	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 79039..79506 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_6a-0001-cds	EsuBft893_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_1228 74394..74501 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_6a-0001	EsuBft893_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_1228 74394..79506 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_1228:74394..79506-
coding sequence from alignment at Scaffold_1228:74394..79506-

spliced messenger RNA

>EsuBft893_6a-0001 ID=EsuBft893_6a-0001|Name=EsuBft893_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=576bp|location=Sequence derived from alignment at Scaffold_1228:74394..79506- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGGGACGGCGTCAACAGAGAAGACGATGGCCTTTCCCCGCCGCA
AGACGCGCAGGCTGTTATGCAGGCTTCTTCCGCGTCGAAACGACGGCGCC
GCCCGCAGCGGGCGAGCAACCCCGCCAGGCTACGGCTCAGCGAGCTGCTG
TCGAATAACTTGGTCTCCGCCGGGAAATTCGCGACGGGGAGGACCATCGA
CCCCCGCAAGCCTGACCCATCCATGCCGCAAGCCTGCATGCCGAGAATAA
AGCACAAGGCGATGTCCGCCTCCCTGACGCTTCCCCTGGGCGGGCGGCAG
GCCGAGAAGCTGAAGGCGGCCCAGGTCAACGCCGGGCAGGAGCGGGACGT
CAACGTGGACGGAGTCCCGGAGAAGAGGCTGCCTTGGGCGGTGCGGCCGG
ATGTTGATTTCAAAATCGTAAACCACAAGGCGTGGTCCACCGGAGTCGTG
GCCCCCGTGGTTGCCCAGGTCAAGGAGGCGCTGGGATTCGGGGAGTGGGA
GGTGGAAGCGTCCCTGAGCGAGATGCTTCTTTGCGAGGAAGACTGCTTCT
ACAGGTGGGGGTCGCAACAGCACTGA

protein sequence of EsuBft893_6a-0001

>EsuBft893_6 ID=EsuBft893_6|Name=EsuBft893_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MSGDGVNREDDGLSPPQDAQAVMQASSASKRRRRPQRASNPARLRLSELL
SNNLVSAGKFATGRTIDPRKPDPSMPQACMPRIKHKAMSASLTLPLGGRQ
AEKLKAAQVNAGQERDVNVDGVPEKRLPWAVRPDVDFKIVNHKAWSTGVV
APVVAQVKEALGFGEWEVEASLSEMLLCEEDCFYRWGSQQH

mRNA from alignment at Scaffold_1228:74394..79506-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft893_6a-0001 ID=EsuBft893_6a-0001|Name=EsuBft893_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5113bp|location=Sequence derived from alignment at Scaffold_1228:74394..79506- (Ectocarpus subulatus male Bft15b)
ATGAGTGGGGACGGCGTCAACAGAGAAGACGATGGCCTTTCCCCGCCGCA
AGACGCGCAGGCTGTTATGCAGGCTTCTTCCGCGTCGAAACGACGGCGCC
GCCCGCAGCGGGCGAGCAACCCCGCCAGGCTACGGCTCAGCGAGCTGCTG
TCGAATAACTTGGTCTCCGCCGGGAAATTCGCGACGGGGAGGACCATCGA
CCCCCGCAAGCCTGACCCATCCATGCCGCAAGCCTGCATGCCGAGAATAA
AGCACAAGGCGATGTCCGCCTCCCTGACGCTTCCCCTGGGCGGGCGGCAG
GCCGAGAAGCTGAAGGCGGCCCAGGTCAACGCCGGGCAGGAGCGGGACGT
CAACGTGGACGGAGTCCCGGAGAAGAGGCTGCCTTGGGCGGTGCGGCCGG
ATGTTGATTTCAAAATCGTAAACCACAAGGCGTGGTCCACCGGAGTCGTG
GCCCCCGTGGTTGCCCAGGTATGCATGTCCGGTGGGGGCGGGGGTCGGCG
AGGTCGGTGTGTGTCTTTGCGCAGAGTCCCCTCGCGCTATTTTATGGGGC
ATGATGCAATCATGGGGGGCAGGCACGGAAGATGGCAGCAGATGATCCGA
ACACCGTCGGGTTCTCGAAAATGTGTTGGGGCCAAGTTGGGAGTTGGGAC
CCACAGGAGTCTCGTCTCTCCACCTCCACACTGGATGGTACAACAGCAAT
AGTAGACGCTTTGTGTGGGATGCTCTCAACAGCCGGTGTTGGGGTCGCGG
GAGCTTTTTCAAGCGGGGAGCAAAGCAAGCGTCGAAACACCGTACTAACC
ATCCTCTATATCACATTTTGTCAATGAAGAGCTGTAACTTACGTGGGCCT
TGATGTAATTATGTTCTATTAGTCTACACGTTCCACGCGTTGCAGACCGG
TCGCCCTGGTGGTCTAGTTGGTGTCTCCGACACTAGAGCGCAGGTCATGG
GTTCGAATCCCGGCTCAAGCGAGCTTTTCTTGCAAAGCGAGTTTTTCTTT
TGCTTCCGCTCCTGACCTAGCGGACAGCGTTAGTTCGTGTGTACACCGAG
GGAACAGTTCTGAAGTTTTCTCGCATTAATAAAACGAGGGTAAAGCATCG
CAGGAGGGGAGGGTAGAGAGGGGTTCTACTGTATGACCATGGGTTGGAGA
GAACGGCACCAGTGCTGCCAATGCTGTAAGCCCTGATTTGAAGTAAAAAA
AAAAAAGAAAAAAGACAGACTAGTGACGCCGTTCTACGGCAGCAGCACTG
ATGCAGTGACGACCCACCCGACCAACGCACACCACATACACGGACGGGTA
GTCCAGCACTCAAGGCGGGTGTCGGGGGGCGAGAACAGCGGTTAGGTCTG
AACTCACGTACTACCGGTGTCGTTATGCCGGGATTTTTTTATATACCATA
TATTTGTCGACGTTTTCCGGCACCGTCACCGCCCACGACCGTCAACTATG
AAGGCACCTCTGCGTAGCTATAGTCCTGATAAGTCCTCCCCGCTGAAGAG
ACGAAAGGAAAAGAGGGTGTGTGTGTGTGTGTTTTCTCCCATCATTGGAT
TCTGTCGTCTGCCTCTCTGGCCCCTATCCTCCACTTCTACCAGCTAGACG
ACCCAACCGGGGTCACATAGGAGGGGGGGGTTGGACCCCCTCCTGCGGTT
CCTGCCTGAGATGTTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTC
GCGACTTAAGAAGTCGATCAGGTGTGTGGCGTCCCGGGTCGGGAAAATAG
CGTTGGAGAATTACTGTCCCAGTAATCAGGCTTTTTTCCGATGTGGGACT
TTTTCCATATCGTCCCCGGGCAAGCGGTATGGCGCACTTACACCCACCTG
ACGCCACCCTGGGTCTGTGTAGGCTGCTGGAACAAGACCACACAGTACTT
ACACATCATACCAGACGCTATATAGCAGTTTTCCGCCAGTGTTTCGCAGG
TCTGTGCTTGTTAAGTGGGTCACACACACGCTGAGACTTGGAGCAGATGT
GGTTGAACAGACGGATTTGGAGGACGCGTACCAAATTGACGCCGACCCGT
GCGAACTGATCCAAACGGTGGACGCACAAGCTGGTGTTGTTGGCTTTCTG
TAGCACCCATGATATTAGGGGTTCTTTCCTCCTGGATGAAGATATCGGCA
AACATGAAAGGTGGATCTGGGCCCTCCTCCCGTTCTAATACCAAGGATCT
TCTCCAGGGGCTCCGCGATCCAGAGACATCGAAAGGGGTGTGGCAGCCCC
AGGGGGGAAGGAAAAAAAAAAGAGAGAAAACGATGGCGAGTCAGAGTGGA
GAGATGTGTGGGGCCTGACATCAATTGACGACAGCGGTTCGGCTACTGTC
ACAATGAACAATCTCTTGTCTCGCACCTACAGCTGGCACACTCGAAGTGG
CACCTGGGGTTCAAGCTCTTTGCGTTGAGATGNAGAGACATCGAAAGGGG
TGTGGCAGCCCCAGGGGGGAAGGAAAAAAAAAAGAGAGAAAACGATGGCG
AGTCAGAGTGGAGAGATGTGTGGGGCCTGACATCAATTGACGACAGCGGT
TCGGCTACTGTCACAATGAACAATCTCTTGTCTCGCACCTACAGCTGGCA
CACTCGAAGTGGCACCTGGGGTTCAAGCTCTTTGCGTTGAGATGTCTACC
AACAACAAAGTGCCATATCGAGGCGTGTAGTGTGGCCCTATTGTTTGGTG
ATGGTTCGCAAGGCGTTCTGATTTTTGGCAAAACGTGTCCCCGGGCAGCC
ATTAAAAAAAAAAATCCCGGCATAACGACACTGCTACGTGTACCACAAGA
GACGCCCGGCTGATGTTTTCTCCGCGTCGCCGCTGGGCTGATGTTATCTT
CACCGCCGGAGGAATCGTGTTATGATAGTCCGCTCGGCGCACCTGTTGTC
AGGAGAAAAGTGAGGTCTACAATTCCATGGCTACATTTGAACTGCCATGT
TATAAATACTGTACGTACATAACGGAGGGCTTCTCCCCGATAGTGTTGCC
TTGACCCAGTAGATAATACAGGGGATGTATTGTAAAATGTTTTTTGCCGT
TGACTTGTAGAGAACTACAGTAGAGAACTACACGCGACGTTGTGTAAAAT
GTGTGTTGTGTAAAATGTGTGTTGTGTAAAATGTGTGTTGCCTTCCTAAA
TATCCGATGCGCTTGTTCTTATGCAATAGCGAAGTACGATTCAGTGTATG
GGCTTAACACAAACGGAAAGTAAGCCCAGTTTTCAGCCGCTTTCCCTCCA
CTGACTGAAAAGGCTTGGAGCACATCCCCCTCGACTGCTACAGTTTTGTG
TATGTTGTATCTCGAACGGGTACTTTTTCTTTGGTTCTGTGCATACTTTT
TCAAAAAAATCTCAAAATGTGTTCCCTACAAGCAGACGTTCTTGTGCTTA
CATATGTAGCACCAGCTGGTCCATATCACTGGTATAAATCAGCAGTGACT
GACTCGAAATATGCCCAGAACCCAGCCGGTTTCCTCAACTCGCTGCTGCA
AGACTCAACACATGCCCTTGGCTACTTGGTGCACTTTTTCAAACGAGTAG
TCTTTCTGCGGTCATGTATTTTTCCTAGGAGATGCATACTATCTATACGA
CACTCAGATGACACACAAGCACAAGGGGCAACGAACATTATTCCCCCACA
ATCATCTCACCCCGTGGTAATATTGTTGCTGGTTAGCATGAGCCCAAAAC
ATGAACTGCTCTCAGATCTAGTTACCACCGCTGTACAATATATGTGTACA
TGTGCACCACGCAATAGTTTACATACCCGTCACGGGTTCCCAAAAAAGCT
ATCCCGCACACCTACCCGCCCGCCCCTCCCCCCCCCTCACGGGATACAAC
CGCAAAATATTTTTGGCAATCCGGCCGCATATAGGGGGCACATCGTGTGC
TACCATTATAAGGCCCTGTTTTAACGCGAATTCACCCAAAAGGAGGCCCT
GAAATACCTAAGTGGGGAACGACACAACAGTGTATTCCCAGGACGAAATG
AACACAGATGATTGGTCAACGCCCACTTGCACCCCGCCGCGTCCTCAAAA
GCGCGGGGTATACCCTGCCGTCGCTATTAACTAGTTTTCTCCAGAATCGT
ACCCTGATTTCGGGAACATGCCCTCGGACCTGACGGGAAATGAGGCCCTT
TCCTTAACCGTATCTTCCAAAGTAATCCTTTGTTGTTGTTTTCATATTCA
AAACCGTTCCGATCTCTCTACCCAGTACTGTACCTTCATCTGTCCGTACT
GATCAAACACGTTGCCGGTCGATTCCCGTGGTCACAGGCAAACTTACCCC
AGACGAGGTACACTCAAATAAAATGGACCCGAAGAGTACATATCCGACAT
CAGGGTACAATTCTGGAGAAATGCTGCCACGTGTACCCGCCCTTTTTACG
ACGCGGCGGGGCGAAAGTGGGAGTTGACTAATCATCTGGGTTCATTTCAC
GCTGCCGAATACTACGTACCCTGCTGAGTCGCTTTTCGACCAGGGTGTGC
CCTGTTGTGTCGTTTTCCCAACCAAAGTTGGGTTGGGGGTACCGGGGTAC
AGGCGGTGATTGGCCAACAGGGAAAGACACCCTCAACAACGCCGGTTGAA
TAACACCGGTGGCCACGTATAGCTCCCGTGAAATTACTGGGCACAGACTG
AATCACTAAGCCATTCTGTCCTTTGAATAGCGCCGGAACCTTAGAATAGC
GCCGGTCGATTCGCCGGGCCCATGCCGGCGTTGTTGAGGGCCCACCACGG
CTGTACTTGTGTCGATACCAAGGCTTGTGCTGTTCAACGACCAGCAAAGA
TTCTCCGCTCGGATCGTATCTTGTCCTACTCTTTTTGGGAAGTGTCCCAT
ATTTCCCTCCAGGGCATGGAGAGATAGCCCGTCCTAAGGGGCACGATTGA
CGATCAATGCTGTAGCTGTTTAGGGGATGGGTAGTTCTCGATCAGCCTGA
ACGATCGAACAAAGCCGCCGCGCTTCCCCCCGTGTGCTCTCCTGCACCGC
TGCAGGTCAAGGAGGCGCTGGGATTCGGGGAGTGGGAGGTGGAAGCGTCC
CTGAGCGAGATGCTTCTTTGCGAGGAAGACTGCTTCTACAGGTGGGGGTC
GCAACAGCACTGA

Coding sequence (CDS) from alignment at Scaffold_1228:74394..79506-

>EsuBft893_6a-0001 ID=EsuBft893_6a-0001|Name=EsuBft893_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_1228:74394..79506- (Ectocarpus subulatus male Bft15b)
ATGAGTGGGGACGGCGTCAACAGAGAAGACGATGGCCTTTCCCCGCCGCA
AGACGCGCAGGCTGTTATGCAGGCTTCTTCCGCGTCGAAACGACGGCGCC
GCCCGCAGCGGGCGAGCAACCCCGCCAGGCTACGGCTCAGCGAGCTGCTG
TCGAATAACTTGGTCTCCGCCGGGAAATTCGCGACGGGGAGGACCATCGA
CCCCCGCAAGCCTGACCCATCCATGCCGCAAGCCTGCATGCCGAGAATAA
AGCACAAGGCGATGTCCGCCTCCCTGACGCTTCCCCTGGGCGGGCGGCAG
GCCGAGAAGCTGAAGGCGGCCCAGGTCAACGCCGGGCAGGAGCGGGACGT
CAACGTGGACGGAGTCCCGGAGAAGAGGCTGCCTTGGGCGGTGCGGCCGG
ATGTTGATTTCAAAATCGTAAACCACAAGGCGTGGTCCACCGGAGTCGTG
GCCCCCGTGGTTGCCCAGGTCAAGGAGGCGCTGGGATTCGGGGAGTGGGA
GGTGGAAGCGTCCCTGAGCGAGATGCTTCTTTGCGAGGAAGACTGCTTCT
ACAGGTGGGGGTCGCAACAGCACTGA