EsuBft108_35a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft108_35a-0001
Unique Name	EsuBft108_35a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_345	contig	Scaffold_345:360898..362606 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft108_35
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	170
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft108_35a	EsuBft108_35a	Ectocarpus subulatus male Bft15b	gene	Scaffold_345 360898..362606 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_35a-0001-exon	EsuBft108_35a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 360898..362606 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_35a-0001-exon	agat-three_prime_utr-868	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_345 360898..362304 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_35a-0001-cds	EsuBft108_35a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_345 362305..362529 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_35a-0001-exon	agat-five_prime_utr-545	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_345 362530..362606 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_35a-0001	EsuBft108_35	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_345 362305..362529 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_345:360898..362606-
coding sequence from alignment at Scaffold_345:360898..362606-

spliced messenger RNA

>EsuBft108_35a-0001 ID=EsuBft108_35a-0001|Name=EsuBft108_35a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_345:360898..362606- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTGTACTGGGGAGTCACGACCGAACTGACTACGATACAGGCAGACTT
TGCAGCGCAGGTGCATTGTCACCGTGTATGGAACGGTTGAGCCGACCCCA
TTCCCTGGTCTGCGCGAAGACCGGCGCCTCAACCTTCCTGCACAATAGGA
TGGTTCGCGTGCTGTTAAAGACATTACGCGAATGCCACATGCCAATCGCT
GTTGAAGACTCTTCCCCATTTACTACAGGCACTGGTAGGGGAAGAGGGCT
CTACAAGATGGATTTAGTGATCCCCCAGGATTACACGCAGGAGATAGACT
AAAGAAGAGAAACTCTGCACCAAATCCATCCTTATAGATGTCACAGTCGT
CAATCCATCTGCTAGGCGAAGTATCGACAAGTCAATCCAAACGCCAGGAT
CCGCCCTCGAAGATCGAGCTGCAAGTAAGGCAAAACACTATGCGGGAACT
TTCAACCCGTCTAGATCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CCTCCGCTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAAGGCATTTGT
GTAGCTGAGATGTGTCTGTACGTGAAAGAACATGTGGAGAGAGTCGTATT
GGCATTCGCATCAAGCGCATTGCGCATTTTTCGAATTTTGGCCCCCTTCC
AGGGACCTTGATTTTTACCCGCTGGGACTGACGTCTTTTCATTGGTCAGC
CGGTTAGCG

protein sequence of EsuBft108_35a-0001

>EsuBft108_35 ID=EsuBft108_35|Name=EsuBft108_35a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MERLSRPHSLVCAKTGASTFLHNRMVRVLLKTLRECHMPIAVEDSSPFTT
GTGRGRGLYKMDLVIPQDYTQEID

mRNA from alignment at Scaffold_345:360898..362606-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft108_35a-0001 ID=EsuBft108_35a-0001|Name=EsuBft108_35a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_345:360898..362606- (Ectocarpus subulatus male Bft15b)
GTCGTGTACTGGGGAGTCACGACCGAACTGACTACGATACAGGCAGACTT
TGCAGCGCAGGTGCATTGTCACCGTGTATGGAACGGTTGAGCCGACCCCA
TTCCCTGGTCTGCGCGAAGACCGGCGCCTCAACCTTCCTGCACAATAGGA
TGGTTCGCGTGCTGTTAAAGACATTACGCGAATGCCACATGCCAATCGCT
GTTGAAGACTCTTCCCCATTTACTACAGGCACTGGTAGGGGAAGAGGGCT
CTACAAGATGGATTTAGTGATCCCCCAGGATTACACGCAGGAGATAGACT
AAAGAAGAGAAACTCTGCACCAAATCCATCCTTATAGATGTCACAGTCGT
CAATCCATCTGCTAGGCGAAGTATCGACAAGTCAATCCAAACGCCAGGAT
CCGCCCTCGAAGATCGAGCTGCAAGTAAGGCAAAACACTATGCGGGAACT
TTCAACCCGTCTAGATCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCTGT
CCTCCGCTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAAGGCATTTGT
GTAGCTGAGATGTGTCTGTACGTGAAAGAACATGTGGAGAGAGTCGTATT
GGCATTCGCATCAAGCGCATTGCGCATTTTTCGAATTTTGGCCCCCTTCC
AGGGACCTTGATTTTTACCCGCTGGGACTGACGTCTTTTCATTGGTCAGC
CGGTTAGCG

Coding sequence (CDS) from alignment at Scaffold_345:360898..362606-

>EsuBft108_35a-0001 ID=EsuBft108_35a-0001|Name=EsuBft108_35a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_345:360898..362606- (Ectocarpus subulatus male Bft15b)
ATGGAACGGTTGAGCCGACCCCATTCCCTGGTCTGCGCGAAGACCGGCGC
CTCAACCTTCCTGCACAATAGGATGGTTCGCGTGCTGTTAAAGACATTAC
GCGAATGCCACATGCCAATCGCTGTTGAAGACTCTTCCCCATTTACTACA
GGCACTGGTAGGGGAAGAGGGCTCTACAAGATGGATTTAGTGATCCCCCA
GGATTACACGCAGGAGATAGACTAA