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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2903.EOD19796 |
| ProteomeId | EsuBft108_23 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | IPR000306 |
| Protein domains | TMhelix |
| Protein domains | IPR011011 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | Coil |
| Protein domains | IPR017455 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR013083 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | run and fyve domain-containing protein 2 os:mus musculus gn:rufy2 pe:1 sv:2 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2383 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.36e-10 |
| EggNOG OGs | KOG1729@1|root,KOG1729@2759|Eukaryota |
| Ec32 ortholog description | FYVE zinc finger |
| Ec32 ortholog | Ec-16_002350.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | lipid binding |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0046872 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft108_23a-0001 ID=EsuBft108_23a-0001|Name=EsuBft108_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2383bp|location=Sequence derived from alignment at Scaffold_345:226190..231269- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACCACCACGAAGCTCAGGCTGACTCTCGAAGAGGAAGACCAGGCGAA ACAACAGCAGCAGCAGCAGCAGCAGAAGCAACAGATAAAACCGTGCGCCA CGCCCAGGGGCTTCAGAGAGATCCCTTTGCAGATCACCCCTTCTACGTGG AAAACGGACCTCACCAAGTGTAACGTGTGTGGCGACCGCTTCACATGGCT AAACCACCGCCACAAGTGCCGCAACTGCTGGCAGGCCGTCTGTAACTCTT GCGCCAAGAGTCGGAAGGTCATACGAGCCCGCACCGCCCCGAAGAGAGTG TGCGACACGTGCATCCAAAACTGCTGGACCCCCAGGACCCCGGCTGTCAC CAAGCCCGCCGCCGCCGCCGGCAGCGTCGTCACCAAGGCGGACGGCGACC GCCGCGTCTCCCTGACCGTGTCCACGTCCGACGGCTCGTGTCCGGTCGAC GCCACCGCTACGGCACCCCTCTCCCCCGGCACCCCCGCCGCCGCGGGTTT CTTCGGGCCGGGCGCGGCGGCCGCGGCTACCCCGTCAACGTCAAGGGCAG CAGCAGCTGAGGAGACAAAGAGCAGCAGCGACAGCAGTGGCAACGATGGC GTCAGCCGAGCTCTCCCATCGGGCCGCCGCCGTCACCGCGATCACCGCCG CCAGGCTAGCGTCAGTGTGGTCATGCCGCCCTTGCCGCTGCTGGCCTCGC CGCCGGGGTCTTCTTCTTCTTTCGCGTCGCCGTTGGCGATGCTGCCGCCG CCGACGCCGGCCGGAGGCGACGACGACGAAGCGGGGGAGGAAGAAGGAAC CGTGGTGTTCCCGCCGGCAGGAGGCGTTATTACTCCATCGTCGGCGTCTG CATCTACCGCCGTTGGACGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGCG GAGTTGTCCCCGTTCTTCGGCGGCCGCGAGAAGAGGAGCGGTAGGCGGGA GAGCACTGGCGGCCGTCTGGAGAGCGGCGGCGGTGGCGCGCTTGGCGGCG GGGGTTGGGCCGACAAGGTGGTGGCCGATCTGCTGCAGCAGCAAGGCGCG GAGAAGGCGGCGGCGGAGGACGAGAAGCACGATGACCGCGGTAGTAATAA CCTTGCCGCACTGTCGGAGGAACCTGCTGTCGACGACGACGCTACCGCCG GTGGTATGAAGGAAGAGGAGGAGGAGGATGGCGATCAGGGAGGGCCGATG ATGGTGAAGCTGACGCCGTGGACGGGGGTCGTGATGGGTGCCGTGGCGAT CGGCACAGGCGTCGCCATCGCCGTGGTTGTCCGAAGTGCCTTCTCTCTCG TCTTCTACTGAATCTCTGGTGATCTTTTCTCTTGTGTTCCATCTGGTGTT CTTCTGCTAACCATTTGTTCTTCTTGTTCGACTGAAATCGTTGAGAGCGC CCAAAAAGGGAGGATTGATGGTCCCTACTCCCTCCAATAGTTGAACGATC GCTCTGCGATTGGCTGATATTATCGCATGTGTACATGGATCTTTGCATGC GGGTATGGTCTTTTGTGTTCCAAATGCACATGTGTTGCGAGACTGTTGTG CAGAAGAAGAGCGCAGAACCGAAGCAAGGGGAGAACAAGGATTTTGAGAG CCAGGGATCGTTATTGTGCACTAGAAAGAGTACCAGAGCATAGAAAATAC GGAGACATTTAGTGCCTGGGAGAGAAAGAAAGGCCCTGCTCTCCTGTTTT TCAATTCAAAACCCACCCGTGCTGGTGTGTGTTCTGCGAAGGAGGAAAGG AGCAGCGGGGGTACTGTGCGTGCGTGTGCAGTGGTGATGTATTATATTTT GATACACTAGGTGAGGTGAGGCGTGTTGCCCAGTGTGGAAAACGCATCGG AAAATTATGCAGCCTAGCCTGGCCTGTTGCGTTTTTCATGCACGTTTCTT GGGGCGAGTCGTGGGCTGGAGCGGTGCGCGTTCGGTGGTTGCTGAGAATT GTACTACTAGAGGTACTAATGAAAACCCTACGGAGTTTCACATTTCCGAG TGACTTTCGTTAGCTCCGCAGCTGTATTAGTGTGTGGTTCAGGTAGGGTA GTGTCTTCAACTGCTCGCTCAATGAATCAAGACTGTCCCATGTCTTGCCG CGGCGGCTACAACACTGCTGGGCTCGCATCTGACGAGCCTTACGCGTAAC GAATTATTACATTTGTTGTTTTTTTTATCGTTGGTGTTGGTAATGCGTAC AAGACTACCGAGATTATTTAGTGAATGCGTGATTGGACTAGCAAGCGTAA GTTGGACTGCCTCCTTTCGAAAGCGCTGCAGCATCTTGTGTTCGGAAGGG GAGTTGGTCTACCCGAGTTTTTTATTTTTACAGGATCCAGCGTTGTTGGT TGTAGGTAGGGGGGGGGGTTGTGCACGGTGAAA back to topprotein sequence of EsuBft108_23a-0001 >EsuBft108_23 ID=EsuBft108_23|Name=EsuBft108_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=436bp
MTTTKLRLTLEEEDQAKQQQQQQQQKQQIKPCATPRGFREIPLQITPSTW KTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRV CDTCIQNCWTPRTPAVTKPAAAAGSVVTKADGDRRVSLTVSTSDGSCPVD ATATAPLSPGTPAAAGFFGPGAAAAATPSTSRAAAAEETKSSSDSSGNDG VSRALPSGRRRHRDHRRQASVSVVMPPLPLLASPPGSSSSFASPLAMLPP PTPAGGDDDEAGEEEGTVVFPPAGGVITPSSASASTAVGRRGGGGGGGGA ELSPFFGGREKRSGRRESTGGRLESGGGGALGGGGWADKVVADLLQQQGA EKAAAEDEKHDDRGSNNLAALSEEPAVDDDATAGGMKEEEEEDGDQGGPM MVKLTPWTGVVMGAVAIGTGVAIAVVVRSAFSLVFY back to topmRNA from alignment at Scaffold_345:226190..231269- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft108_23a-0001 ID=EsuBft108_23a-0001|Name=EsuBft108_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5080bp|location=Sequence derived from alignment at Scaffold_345:226190..231269- (Ectocarpus subulatus male Bft15b) ATGACCACCACGAAGCTCAGGCTGACTCTCGAAGAGGAAGACCAGGCGAA
ACAACAGCAGCAGCAGCAGCAGCAGAAGCAACAGATAAAACCGTGCGCCA
CGCCCAGGGGCTTCAGAGAGATCCCTTTGCAGATCACCCCTTCTACGTGG
AAAACGGACCTCACCAAGTGTAACGTGTGTGGTAAGTGGTGAGAGCAAGG
ACCTCTGGTGCTTCCGAGGTCGTATGTAGCAGCTCACGGCGCGGTTTTTT
CCCGCTATGGGCGACTTGTTCTTCGCGCGCAATCGTCGTTGGCTTCAGCA
AATCCTGCGTACCTACCATGTCGGAAAGTTGTTACATCGAGCAAACCACT
GCTGTTGCCCTGTGTCAGCTGCATCTCACAGCCTTCCCCTCTGCAATAGT
CGCTCATCAACCTCTCAGGATGCTTGCTCCCTCCAGCTTTTTCCCGACGA
AAGACATGTTGGATTTGCTCTCGAAATTTCGCGCGCAGTGCTCTCTCTGT
CGGACAAACCCCCCCGAAGTAAACGGTTTTTCTTTCTGTGGCCCCTGTTT
TTCACCGCCGACTGCTGTGTTTGTTGCACGCCCCACCGTCGCTTCGACGA
CCCACCTGCATAGGCGACCGCTTCACATGGCTAAACCACCGCCACAAGTG
CCGCAACTGCTGGCAGGCCGTCTGTAACTCTTGCGCCAAGAGTCGGAAGG
TGAGGATGTTTTTGTACTAATTATGTACCGTGGTACGTTTTTTCTGTTCT
GTCTTTCGGGTTGTATCCAAACCACAAACGCACTGGCCCGCAAGATCTGC
TGGTCAAGTAACCAAGTAGCCGTGTCTGCACGCACACACGCACATGGAAC
AGACCAACAGCAGTACGCCTACAACTGCAACAGCAGTGCAGCAGCTGTGG
TACGCTGCGGTTTGCGTGTGTGTGTGGCTGAGATCACGTCGCGCGCGAAG
CACCTGGATATCAAGTAAGCACATCATACAGGGTCGCTTTATCGAAGACA
AGGTAGATGCGTGGAGTACATTGAGTCTGACCCGCAAAGCTGTTTTTAGA
AAGAACTTGGGTGCGGTAAAGTTCCTAAGGAACCGCCTCTTGCTCTCCAG
GAGTGCAATCACCTCCCCTCTTCAAAACCTGACTTATGTCTCGAGGGTTG
GACGGTGTGTGTGTTGTGTGTGTGTTTTGCGCCCTATTTATTATGGCGAC
AGTCCCCCCATTTTTCGTGGTGAGACATGTACTACACGTTTCAGCGTAAC
ACTTTCGGTGTATTTTTTCGTACAACTACAACCATCCAGGGTCACACAGG
AGGGGTAAACACCAGGGCTTTTTTTCTTCTCTTTATTTCTTTTCATGCCC
CACCTTCCTCCTGCGGTGCGTGCTGAATTTTTATTTTATCGCGAGAAGGG
TCCACCCGTCCCTTTCCCTCGTCAACGGCGCTAACGTCGAAGTTTGGTAC
TCACGAGAGCTTTTTAGCTATATTTTGCTTTCACCCGCAATTTTCGTAAA
TGTTTCATTTCACCCCATGGGGAACTCACTACCTCTGCGACTATATAATA
GCGGATTACGAGGATACCACTAGACCACCGGGGCGACGGTGTATGTGCTG
TTGAAAGAAATTCGGACGATTTGTGTACATGTGGGACGAAAACGCATCGC
TGTTAGGCATGGTAGCAGCTGAATGAGACAAGTAGATACGGATACATGAC
GAGTTTTGGATTCCTCTCGACAACACCCTAAGTCGCACAAATCTGCCCCC
ACAGCGGCCTGGTTGTGAACAAACATCCCCGAGTGTCGTTGTCGTTGTGT
CTGTCTCCTTGTCTTGCTGAGTCTTGGGATTATTTCTTTGTTGGCGTGTT
TTTCGCGGAAGGAAGTTCCTCTTACCATGATAGAGCGAGTAGTCTTACAT
ATCCCCCCGCGACCCGTTGGCGGGCGTGATTTGGCAGTTTGCTGTTTGCA
TTGGAGCTGTTGACATCGCACAGAACGAACTTGGTGGTGCATACTGCTGG
AAGTAGTGTTGTCCTATCCCCGGTGGTCTCGATGACAAATCATCGATGGG
CTAGCGTAGCGGCTAGATTTGGGGAGTTCCGAGTTCCGCCGATGTCCAGC
GTCTTCCTTCGCTGGCTGGTGGTGTAGGAAGCGCGCTTCATCGGGAGACA
GAGTACGCATCTAGGTTCGTCGGAAAGTACTATGTCGTGGCTGCTCGCGG
GAAAAAAGATGAATCGATGCATCCATCCGCCGTAGAGATATAAAAGGCTC
TTTGTGTGTGTGTTTGTTTGGACTCCCCAAGATCGCTATTCTTTTTGTTC
TATCTTGAGCAGCAAGAGACTCGAAACATTTCGAGGGGAGGTGCTGCGAG
GTGGCAAGCCAAATGGACGAGATCGAATTCCCAAGAAGCAACAATGCTGT
TCGGTGCAAATATTTGCATTCAGTGTGCAGCACTCACGGCGAGACTGACG
CCCAGAAGAGATTGAAAGAAAGTCGAAACCATACACACACACACACGCAT
GCATGCACGCACGCACCCACGCACGCACGCACACACGCCTTGGTAGACAC
GTGAAATGTTCTGTTGCTACCGTTCTCTTTAAAGCCGGAGAATAGCTTGC
TTAGCCCCCTCATGACGCCCCGTCATGGGGCCCCATATCATGGCATTTGT
GTTCAACCAAACTGAGACTGGCGCCTTTTCATTGGTCAGCCGGTTGGCGC
GGTCGATGCTAATAAGAAAGACACACACACGAGACACACCCGTGATTGCC
AACGTGATGAAGGGGGGGCATCGCGATTGTGTGGGCGGAACCATTCTTGC
GTTGCCAGGAAGACAGCAATAAAATTTATATGCATATTGACACCAAAACA
CTTGACGGGGCATTTCCACAACAAACCAACCAACCAACCATCTTTATTCG
CATCATATCTTCAACAACCACCCCACCCCCCGTCCCGCATGATAACAATC
CCCCAAAACACAAGGTCATACGAGCCCGCACCGCCCCGAAGAGAGTGTGC
GACACGTGCATCCAAAACTGCTGGACCCCCAGGACCCCGGCTGTCACCAA
GCCCGCCGCCGCCGCCGGCAGCGTCGTCACCAAGGCGGACGGCGACCGCC
GCGTCTCCCTGACCGTGTCCACGTCCGACGGCTCGTGTCCGGTCGACGCC
ACCGCTACGGCACCCCTCTCCCCCGGCACCCCCGCCGCCGCGGGTTTCTT
CGGGCCGGGCGCGGCGGCCGCGGCTACCCCGTCAACGTCAAGGGCAGCAG
CAGCTGAGGAGACAAAGAGCAGCAGCGACAGCAGTGGCAACGATGGCGTC
AGCCGAGCTCTCCCATCGGGCCGCCGCCGTCACCGCGATCACCGCCGCCA
GGCTAGCGTCAGTGTGGTCATGCCGCCCTTGCCGCTGCTGGCCTCGCCGC
CGGGGTCTTCTTCTTCTTTCGCGTCGCCGTTGGCGATGCTGCCGCCGCCG
ACGCCGGCCGGAGGCGACGACGACGAAGCGGGGGAGGAAGAAGGAACCGT
GGTGTTCCCGCCGGCAGGAGGCGTTATTACTCCATCGTCGGCGTCTGCAT
CTACCGCCGTTGGACGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGAG
TTGTCCCCGTTCTTCGGCGGCCGCGAGAAGAGGAGCGGTAGGCGGGAGAG
CACTGGCGGCCGTCTGGAGAGCGGCGGCGGTGGCGCGCTTGGCGGCGGGG
GTTGGGCCGACAAGGTGGTGGCCGATCTGCTGCAGCAGCAAGGCGCGGAG
AAGGCGGCGGCGGAGGACGAGAAGCACGATGACCGCGGTAGTAATAACCT
TGCCGCACTGTCGGAGGAACCTGCTGTCGACGACGACGCTACCGCCGGTG
GTATGAAGGAAGAGGAGGAGGAGGATGGCGATCAGGGAGGGCCGATGATG
GTGAAGCTGACGCCGTGGACGGGGGTCGTGATGGGTGCCGTGGCGATCGG
CACAGGCGTCGCCATCGCCGTGGTTGTCCGAAGTGCCTTCTCTCTCGTCT
TCTACTGAATCTCTGGTGATCTTTTCTCTTGTGTTCCATCTGGTGTTCTT
CTGCTAACCATTTGTTCTTCTTGTTCGACTGAAATCGTTGAGAGCGCCCA
AAAAGGGAGGATTGATGGTCCCTACTCCCTCCAATAGTTGAACGATCGCT
CTGCGATTGGCTGATATTATCGCATGTGTACATGGATCTTTGCATGCGGG
TATGGTCTTTTGTGTTCCAAATGCACATGTGTTGCGAGACTGTTGTGCAG
AAGAAGAGCGCAGAACCGAAGCAAGGGGAGAACAAGGATTTTGAGAGCCA
GGGATCGTTATTGTGCACTAGAAAGAGTACCAGAGCATAGAAAATACGGA
GACATTTAGTGCCTGGGAGAGAAAGAAAGGCCCTGCTCTCCTGTTTTTCA
ATTCAAAACCCACCCGTGCTGGTGTGTGTTCTGCGAAGGAGGAAAGGAGC
AGCGGGGGTACTGTGCGTGCGTGTGCAGTGGTGATGTATTATATTTTGAT
ACACTAGGTGAGGTGAGGCGTGTTGCCCAGTGTGGAAAACGCATCGGAAA
ATTATGCAGCCTAGCCTGGCCTGTTGCGTTTTTCATGCACGTTTCTTGGG
GCGAGTCGTGGGCTGGAGCGGTGCGCGTTCGGTGGTTGCTGAGAATTGTA
CTACTAGAGGTACTAATGAAAACCCTACGGAGTTTCACATTTCCGAGTGA
CTTTCGTTAGCTCCGCAGCTGTATTAGTGTGTGGTTCAGGTAGGGTAGTG
TCTTCAACTGCTCGCTCAATGAATCAAGACTGTCCCATGTCTTGCCGCGG
CGGCTACAACACTGCTGGGCTCGCATCTGACGAGCCTTACGCGTAACGAA
TTATTACATTTGTTGTTTTTTTTATCGTTGGTGTTGGTAATGCGTACAAG
ACTACCGAGATTATTTAGTGAATGCGTGATTGGACTAGCAAGCGTAAGTT
GGACTGCCTCCTTTCGAAAGCGCTGCAGCATCTTGTGTTCGGAAGGGGAG
TTGGTCTACCCGAGTTTTTTATTTTTACAGGATCCAGCGTTGTTGGTTGT
AGGTAGGGGGGGGGGTTGTGCACGGTGAAA back to topCoding sequence (CDS) from alignment at Scaffold_345:226190..231269- >EsuBft108_23a-0001 ID=EsuBft108_23a-0001|Name=EsuBft108_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1311bp|location=Sequence derived from alignment at Scaffold_345:226190..231269- (Ectocarpus subulatus male Bft15b) ATGACCACCACGAAGCTCAGGCTGACTCTCGAAGAGGAAGACCAGGCGAA ACAACAGCAGCAGCAGCAGCAGCAGAAGCAACAGATAAAACCGTGCGCCA CGCCCAGGGGCTTCAGAGAGATCCCTTTGCAGATCACCCCTTCTACGTGG AAAACGGACCTCACCAAGTGTAACGTGTGTGGCGACCGCTTCACATGGCT AAACCACCGCCACAAGTGCCGCAACTGCTGGCAGGCCGTCTGTAACTCTT GCGCCAAGAGTCGGAAGGTCATACGAGCCCGCACCGCCCCGAAGAGAGTG TGCGACACGTGCATCCAAAACTGCTGGACCCCCAGGACCCCGGCTGTCAC CAAGCCCGCCGCCGCCGCCGGCAGCGTCGTCACCAAGGCGGACGGCGACC GCCGCGTCTCCCTGACCGTGTCCACGTCCGACGGCTCGTGTCCGGTCGAC GCCACCGCTACGGCACCCCTCTCCCCCGGCACCCCCGCCGCCGCGGGTTT CTTCGGGCCGGGCGCGGCGGCCGCGGCTACCCCGTCAACGTCAAGGGCAG CAGCAGCTGAGGAGACAAAGAGCAGCAGCGACAGCAGTGGCAACGATGGC GTCAGCCGAGCTCTCCCATCGGGCCGCCGCCGTCACCGCGATCACCGCCG CCAGGCTAGCGTCAGTGTGGTCATGCCGCCCTTGCCGCTGCTGGCCTCGC CGCCGGGGTCTTCTTCTTCTTTCGCGTCGCCGTTGGCGATGCTGCCGCCG CCGACGCCGGCCGGAGGCGACGACGACGAAGCGGGGGAGGAAGAAGGAAC CGTGGTGTTCCCGCCGGCAGGAGGCGTTATTACTCCATCGTCGGCGTCTG CATCTACCGCCGTTGGACGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGCG GAGTTGTCCCCGTTCTTCGGCGGCCGCGAGAAGAGGAGCGGTAGGCGGGA GAGCACTGGCGGCCGTCTGGAGAGCGGCGGCGGTGGCGCGCTTGGCGGCG GGGGTTGGGCCGACAAGGTGGTGGCCGATCTGCTGCAGCAGCAAGGCGCG GAGAAGGCGGCGGCGGAGGACGAGAAGCACGATGACCGCGGTAGTAATAA CCTTGCCGCACTGTCGGAGGAACCTGCTGTCGACGACGACGCTACCGCCG GTGGTATGAAGGAAGAGGAGGAGGAGGATGGCGATCAGGGAGGGCCGATG ATGGTGAAGCTGACGCCGTGGACGGGGGTCGTGATGGGTGCCGTGGCGAT CGGCACAGGCGTCGCCATCGCCGTGGTTGTCCGAAGTGCCTTCTCTCTCG TCTTCTACTGA back to top
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