EsuBft108_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_4a-0001
Unique NameEsuBft108_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:56937..58924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft108_4
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length84
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_4aEsuBft108_4aEctocarpus subulatus male Bft15bgeneScaffold_345 56937..58924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_4a-0001EsuBft108_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 58166..58924 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_4a-0001-exonagat-exon-104979Ectocarpus subulatus male Bft15bexonScaffold_345 56937..57229 +
EsuBft108_4a-0001-exonagat-exon-104978Ectocarpus subulatus male Bft15bexonScaffold_345 58101..58621 +
EsuBft108_4a-0001-exonEsuBft108_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 58898..58924 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_4a-0001-exonagat-five_prime_utr-546Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_345 56937..57229 +
EsuBft108_4a-0001-exonagat-five_prime_utr-547Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_345 58101..58165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_4a-0001-cdsEsuBft108_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 58166..58621 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_4a-0001 ID=EsuBft108_4a-0001|Name=EsuBft108_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=841bp|location=Sequence derived from alignment at Scaffold_345:56937..58924+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACAGACAACAGGGGCCCCCAGTTGCTTGCGACAAGCCATAGAGCAGGTG
AACTGGTGTGCATCAGGCGACGCTCTGCAGTGCCCCTCGGCGGTCCGAAA
GAAGGGCTGCTGTGAGCTACGTCTGGACGAGAGGGGAGGGTCGACAAACA
GCGAAAGAGCAGACCGCTCCCCTCTTGTTGTCTCTCTGCAACAACGCCAC
CCATCGGGTAGCTCTGCCATTGTCGTGGAGGAATCTGCTCGGCGGTGCGC
GGACTGGAAACTCGCTTGACTGGACCACTTTCTGAGGCGAAAGCAATCAG
CGGCGGCGACAGCGGCGGCAGGCGGCGGGAAGATTTTAGGGTTGCCGCGA
AGAAAAGCATGGACCCGGCGGAGTTCCAGCGCCGGATCGCCGAGGCGCAG
GCCTTGAAGGACGCGGCGGCGGCGGCGGCGTCAACCGCGGCCGCAACCAC
CCCCGCCACGACACCAAACGCCACTGCCGCTGCCGCCCCCGGTACCGCTG
CCCCTCAGCAGGGCCAATGGCAGCAACAACCCGGAGTGGCAGCAGCAGCA
ACAGAACCGCCTTCTGCTGCTGCGCCACCAGCTGCGTACCCATACCCTGG
CGCCACCGCCGCCGCCGCTCCGGCTGCTGCCGCCCCTGCTTCTTCTGCTT
CTGCCAGCACGGGGTTTACGGCGACAACGCAGGCGGCGCCGGCGGCAGCG
GCGGCAGCGGGGGGTCCTGCTGTGGCGGCGCCGGCGGCACCAGCGCCTGG
GACGGGGGCGGCGGCGATGGCAGCGCCGCAAGCAGCTCCCGCCGGGCTTG
ATGCCGCCCAGCAGGCAAACCCATGCCCAAGTTTGGCTTGA
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protein sequence of EsuBft108_4a-0001

>EsuBft108_4 ID=EsuBft108_4|Name=EsuBft108_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MDPAEFQRRIAEAQALKDAAAAAASTAAATTPATTPNATAAAAPGTAAPQ
QGQWQQQPGVAAAATEPPSAAAPPAAYPYPGATAAAAPAAAAPASSASAS
TGFTATTQAAPAAAAAAGGPAVAAPAAPAPGTGAAAMAAPQAAPAGLDAA
QQANPCPSLA
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mRNA from alignment at Scaffold_345:56937..58924+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_4a-0001 ID=EsuBft108_4a-0001|Name=EsuBft108_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1988bp|location=Sequence derived from alignment at Scaffold_345:56937..58924+ (Ectocarpus subulatus male Bft15b)
AACAGACAACAGGGGCCCCCAGTTGCTTGCGACAAGCCATAGAGCAGGTG
AACTGGTGTGCATCAGGCGACGCTCTGCAGTGCCCCTCGGCGGTCCGAAA
GAAGGGCTGCTGTGAGCTACGTCTGGACGAGAGGGGAGGGTCGACAAACA
GCGAAAGAGCAGACCGCTCCCCTCTTGTTGTCTCTCTGCAACAACGCCAC
CCATCGGGTAGCTCTGCCATTGTCGTGGAGGAATCTGCTCGGCGGTGCGC
GGACTGGAAACTCGCTTGACTGGACCACTTTCTGAGGCGAAAGGTGTGGG
GTGACTCTGGTTGGCCACCTGTAGCTGTTGTAATTGTGGTTCGGATAGGG
TTTGTACAGCAGTATCCCAGCGAGAGCGGCTGATCCACATACATACACAG
CAAGAGATCCGCACGCAACAGCAGCAGCGCAGGCAGGAATTTAACACAAT
CTTGATCGGTACAGCCGAGCAATGCGGCGGAGCTAATAGTTATCGGCTTC
CTCTTCACTCGGAACTTTGACGAACTGTTTGGCAGAATGCACGAGATGGC
ATGGGTCCGGGTACGTAAGATAACACCTTCCCCCGCTTACCACACATGGT
TGTGAATCTACTGTACCTCTATGTTATGGTATCTGTCATCATGAGCCCGA
CTTGTTAATCTACTCCCATATCGAGATGCAAGAATTAAGGTGGCATTTGG
ATGCCACATACATCCACACAGGTAGCATAGCGGGTGATTACAAGCTTTGG
AAGCCGCCATATTGTCACAACGGTTGTCACAACGGTGTGTTATCTTGTGT
CGTAACACGGGTAGGCCATTTATAAGTGAGGGGGTCAAACGCATGTGCTT
TTGTAAATTCGCCGTGAACAGCAACACCGTGCGTAGTCGAAGCGGGAGGG
ACTTTCTGAAGCGCCCGAACCCAACACTTCCACTTGTCCTCTGCTCTCAG
ATGTATTTGTTGAGTTTTCTCGAACATAATGCCTGAAAGTGTTCACCGTG
CGCAAGCTCACGGCAATGACTCTTGTTTCGTGTACCGCTCGCTGTATGCA
CGTGCGCACGCCTCACCCAACCCCTTCTGCCGTGCTACAAGTCTTATGCG
CAATGATGATTTGCTGCATCGCTTGAAATGAACGGTGTGCCGCGCTTACA
CATACATTCCACAGCAATCAGCGGCGGCGACAGCGGCGGCAGGCGGCGGG
AAGATTTTAGGGTTGCCGCGAAGAAAAGCATGGACCCGGCGGAGTTCCAG
CGCCGGATCGCCGAGGCGCAGGCCTTGAAGGACGCGGCGGCGGCGGCGGC
GTCAACCGCGGCCGCAACCACCCCCGCCACGACACCAAACGCCACTGCCG
CTGCCGCCCCCGGTACCGCTGCCCCTCAGCAGGGCCAATGGCAGCAACAA
CCCGGAGTGGCAGCAGCAGCAACAGAACCGCCTTCTGCTGCTGCGCCACC
AGCTGCGTACCCATACCCTGGCGCCACCGCCGCCGCCGCTCCGGCTGCTG
CCGCCCCTGCTTCTTCTGCTTCTGCCAGCACGGGGTTTACGGCGACAACG
CAGGCGGCGCCGGCGGCAGCGGCGGCAGCGGGGGGTCCTGCTGTGGCGGC
GCCGGCGGCACCAGCGCCTGGGACGGGGGCGGCGGCGATGGCAGCGCCGC
AAGCAGCTCCCGCCGGGCTTGATGCCGCCCAGCAGGTGTGGATGTGTGTG
TGTGTCTGTGTGCCTTGCCCGTTGATGCTTTATCGAGCGTTTGGTTTCGA
TTTCATGAAGCACAAAACACTAAAAACATTGACTCGAACTACGTATGCTG
TGCACACCGAGTTTGTTGTTGGTGATGCTGCCCCCTGTTGTTTTTGTTGC
TGTGTGGCTCGTGGTTTGTCCTTGTAGTTTGCTCATATGGGAGAACTCCC
TGCAAAGGCCTGCGATAAGTACTTTTTGCGGGTGTTCCCCCTGCTTCGAC
GCTTGGTGCAGGCAAACCCATGCCCAAGTTTGGCTTGA
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Coding sequence (CDS) from alignment at Scaffold_345:56937..58924+

>EsuBft108_4a-0001 ID=EsuBft108_4a-0001|Name=EsuBft108_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_345:56937..58924+ (Ectocarpus subulatus male Bft15b)
ATGGACCCGGCGGAGTTCCAGCGCCGGATCGCCGAGGCGCAGGCCTTGAA
GGACGCGGCGGCGGCGGCGGCGTCAACCGCGGCCGCAACCACCCCCGCCA
CGACACCAAACGCCACTGCCGCTGCCGCCCCCGGTACCGCTGCCCCTCAG
CAGGGCCAATGGCAGCAACAACCCGGAGTGGCAGCAGCAGCAACAGAACC
GCCTTCTGCTGCTGCGCCACCAGCTGCGTACCCATACCCTGGCGCCACCG
CCGCCGCCGCTCCGGCTGCTGCCGCCCCTGCTTCTTCTGCTTCTGCCAGC
ACGGGGTTTACGGCGACAACGCAGGCGGCGCCGGCGGCAGCGGCGGCAGC
GGGGGGTCCTGCTGTGGCGGCGCCGGCGGCACCAGCGCCTGGGACGGGGG
CGGCGGCGATGGCAGCGCCGCAAGCAGCTCCCGCCGGGCTTGATGCCGCC
CAGCAGGCAAACCCATGCCCAAGTTTGGCTTGA
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