EsuBft103_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft103_25a-0001
Unique Name	EsuBft103_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_344	contig	Scaffold_344:245171..254595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LPL9
ProteomeId	EsuBft103_25
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1360
Hectar predicted targeting category	other localisation
Evalue	7.17e-59
EggNOG OGs	2EUDG@1\|root,2SWJG@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft103_25a	EsuBft103_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_344 245171..254595 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_25a-0001-exon	agat-exon-432	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 245171..245418 +
EsuBft103_25a-0001-exon	EsuBft103_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 253443..253830 +
EsuBft103_25a-0001-exon	agat-exon-433	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 253872..254595 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_25a-0001-exon	agat-five_prime_utr-240	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_344 245171..245342 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_25a-0001-cds	EsuBft103_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_344 245343..245418 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_25a-0001	EsuBft103_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_344 245343..254595 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_344:245171..254595+
coding sequence from alignment at Scaffold_344:245171..254595+

spliced messenger RNA

>EsuBft103_25a-0001 ID=EsuBft103_25a-0001|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1360bp|location=Sequence derived from alignment at Scaffold_344:245171..254595+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCTGACGCAGCCAGTACTCCAGTACATTCTTATATTCGCAGATTTCC
TCTGTATTACGCCTCAAGAACCAGCGGAAACCCATATACTCAGACCTCCT
CTGAGAGACACACCGCCACACGTCAAACACTAGCTACCAAACACGCCACA
GAGGTCGGGAGACCATACAACGATGGACAGGTTTGTAGTCTCCCCTGCCA
GCTCGCCGTCTGCTGCAGACCCCGGCAGTGGTGCTGATGATGCAGGGGGT
GGGACCGTAGTGTGCGCATCCACGAAGACACAGCCAGTGACGGCTCAGTC
GACCACGGAGGCAGAGTATATTGCAGCCGGGGAGTGCGTGAAGGAAGCGT
TGTTCGTGCGTGGTGTTCTGTCGTTCATTGCGCCCGAGACGAGCGGTGCC
ACGATCAGGGTCCGTGAGGACAACGAGGGGGCTCTCGCGTTGGTGCAGAA
CCCTTTCAGCTCGGCGGGGAGCAAGCATATCGACGTGCGGTTCCACTTCA
TCCGCGAGCTCTTCAAGGCGGGCAAGATCACCGCAGATTATATCTCGACA
GAAGAGCAGCGCGCCGATATGCTGACCAAGGTCCTTGGTAGGGGCAAGTT
GGAGTACCACCGGAAGGCTCTGATGAACCTGCCGATGGCGTACCAGAATT
TTGTTTTGGACCAGAGCCCTGCCAAAAAGCAACGGTCGGAAGCGCCGTTC
TGGTTCAATTTCGCATCGGGGGAGCAGAAGAGAGACTATGTGTCCGTCAT
GGCGAACAAAGCGATGACCTTGGAGCAGATGGACTTGTGCAAAACTCTGA
AGGATGAACTGCAGTCCGTCAACCAGTTCACCGGCCGCGACTCCATCGAA
TTTGCCGACAGAATCAAGGATATTCAGATGCGCGCCTTGGCGCCCAGCAA
CATGTTAGCTGCTGTCCCCATGGACGCGGACAACTCGATCGTTGCCGTGG
CAAGACCCGTGAACGACAGCATCGACCCCGAGACGGGGCTGCGCATCGCT
ACGGCGACATGCAGCGAGAGCGTGCGGGGCCCCGAGACGTCGATTTGCAA
CGAGGCGGCGAAAATGGGCTTCAAACTCGGCGAAAAAGCCGGACAGGTGG
GCAAAATGGCAAAGAGCCTGTACCGTAAGCGGCACGGGGTCGCAGCTGCT
GCCAACATCCCCAAGCGACACACTATTTTCCGGGGAAAGCCCTTCAGCGA
AAACACGCACTGGCAACGCGATGCCGACATAATTCAAGAAGCCATCCGCA
TCGTATGCGGCCTGGAGGACATTCCTCGGGGAAAGACCGCTCAAACGCTC
TTCAATTTTTTCCCGAGTGCGTGCCAATCTGAATGCCAAACTTGCGAGAT
GGAAATGTAG

protein sequence of EsuBft103_25a-0001

>EsuBft103_25 ID=EsuBft103_25|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MDRFVVSPASSPSAADPGSGADDAGGGTVVCASTKTQPVTAQSTTEAEYI
AAGECVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSAGS
KHIDVRFHFIRELFKAGKITADYISTEEQRADMLTKVLGRGKLEYHRKAL
MNLPMAYQNFVLDQSPAKKQRSEAPFWFNFASGEQKRDYVSVMANKAMTL
EQMDLCKTLKDELQSVNQFTGRDSIEFADRIKDIQMRALAPSNMLAAVPM
DADNSIVAVARPVNDSIDPETGLRIATATCSESVRGPETSICNEAAKMGF
KLGEKAGQVGKMAKSLYRKRHGVAAAANIPKRHTIFRGKPFSENTHWQRD
ADIIQEAIRIVCGLEDIPRGKTAQTLFNFFPSACQSECQTCEMEM

mRNA from alignment at Scaffold_344:245171..254595+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft103_25a-0001 ID=EsuBft103_25a-0001|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9425bp|location=Sequence derived from alignment at Scaffold_344:245171..254595+ (Ectocarpus subulatus male Bft15b)
GCTGCTGACGCAGCCAGTACTCCAGTACATTCTTATATTCGCAGATTTCC
TCTGTATTACGCCTCAAGAACCAGCGGAAACCCATATACTCAGACCTCCT
CTGAGAGACACACCGCCACACGTCAAACACTAGCTACCAAACACGCCACA
GAGGTCGGGAGACCATACAACGATGGACAGGTTTGTAGTCTCCCCTGCCA
GCTCGCCGTCTGCTGCAGACCCCGGCAGTGGTGCTGATGATGCAGGGGGT
ATACGATAGCGTCGCTCATCAACCCAACTGATGGATGCCACTTGGTTGCT
TGGGAGTAATATTATAATGTTTCAATATTTCCTCATGTCCAAAACCAACA
AATTCAGTCGTTGAACTCGAACTTTCTATCGTTTTCCCCGCGATAGTGCC
TCTGTCAGATGGGCCAAAATCACTCATTTTTTTTGCTCTNCGCGGCGCAG
CCGCGACCGCGCGGCTTCGCCGCGCCACCAGTGTACTGATCGGATCCAGT
TTACTGGCTGCTGACGCAGCCAGTATACTTTTTTCTGGCGCGCAGCGCCA
GTACCCAACCCTACAAAAATAACCCATGGCGGGTCATCATCGCCAACAAC
AACGAAATTTGCAAGAATTGTTCGACACCACAGGCGGTCGGTCGCCGTGG
ACGTGAGCATGGCATGCCACGCCACGTTACACTTGCTGCGGTCATGGGAG
CTTTTCCCCTGTCTTCTTCATCGAGTCGGCAATGACTGCTAACACAGCCA
GCTTCTTCCACCTCGTCTTCATACCCACCTGCAACGAACATCGAACGTGG
TTTTCTCAGCGGTAGTGCCAGGCCTTCGCGCGATCGTCCCGCACGAGGCT
TGCCTGCAAGACGGCCCAAAGCGTGCACGAACCTCCTCTCGCACAAATTC
CAGGTCACTCCGAGTACCAGCCGTGTCCGGGTGGTTATCTCCAAACTTCA
TGGTACTGATTCTGAGGGCCCTCCCCAACAGCGAAAATGCCTCCGTGTAC
TCCTCCTGTGGGCGATTGAGACGCATGGTCGAGAAACCAAATCGCGTGCG
CAAACCGCTTTTACGACGACTGGGGCAACACAGCGATTTGCTCACTGTTC
GTATATGTCCTTTACTTGGAAGGGGAAGACGTTTTATCTCTTGTATTAGA
CACGCAAGGGGAGTAGGGAGAAGTGAAGCACTCTTTGGAGTTCGAGGGGT
CCCCGCACATGCAACCATTTCAAGGTGTACGTATGCCCCATCTGCGTGCC
CTCTGCTGTTGCCGGTAGATCTAACCAGTCCGTATCCAAACACACGACCA
CCCTCCCCGGTGTGCACGCGAATGGCAAACCTAACGTGGGGCATGGATAC
CCCTGATCTACCAAAGGGACTCAAAACAACAACAGGCTCGAGGGAAAATC
GGCCAACCAGAACAAAAACCGTTGTCTAACACCCAAAATATAGAAAACCG
TCGCTATCACGGAGGATTCCAACGGCCGCACTTCCAAGACAAGACCAAGG
CAGGACAGATTGAACCGGTCACGCTGATNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTGCCAAGGACCTTGGT
CAGCATGTCGGCGTGCTGCTCTCCAGTCGGAACATACTCTGCAGTGATCT
TGCCCGACTTGAATAGCTCTCGTGATGGAACCGCACGTCGATGTGCTTGC
TCCTCGCTAAGCTGAACGGGTTCTCGATTAAGGCGAGAGCCCCCTTGTTG
TCCTCAAGGACCTTGATCTTCGCCCCACTCGTCTCGGGCGCTATGAACGA
CAGAACGCCACGCACAAACAACGCCTNNNNNNNNNNNNNNNNNNNNNNNN
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AATGGTACCACCAAGCTGTCCCAGACGGCTTATATCGAGAGCATGCTCAA
CCGCTTCAATGTCACGACCACTGCTCCCACGCCCGCTGTCGTCGACGATG
ACCTAGGGCCGAAGAGAGACGACGAGTCCTCGGTGGACAAGCCCGTGAGG
GAAGCGATCGGATGCCTGATGTGGTTGTTGTTCACGAGGCCGAATATCGC
TGTTCGTCGATTCTAGTTACGCCGACAGCACCGTTAACAGGCGTTCGACG
ATGGGGCTAGCCGTGACTGTAGGTGGGACCGTAGTGTGCGCATCCACGAA
GACACAGCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCAG
CCGGGGAGTGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTCGTTC
ATTGCGCCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACAACGA
GGGGGCTCTCGCGTTGGTGCAGAACCCTTTCAGCTCGGCGGGGAGCAAGC
ATATCGACGTGCGGTTCCACTTCATCCGCGAGCTCTTCAAGGCGGGCAAG
ATCACCGCAGATTATATCTCGACAGAAGAGCAGCGCGCCGATATGCTGAC
CAAGGTCCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTGATGA
ACCTGCCGATGTAGGGTTCTGGTCTCGCCTACAGAGTACTGAGGAAGGCA
GGGCGTACCAGAATTTTGTTTTGGACCAGAGCCCTGCCAAAAAGCAACGG
TCGGAAGCGCCGTTCTGGTTCAATTTCGCATCGGGGGAGCAGAAGAGAGA
CTATGTGTCCGTCATGGCGAACAAAGCGATGACCTTGGAGCAGATGGACT
TGTGCAAAACTCTGAAGGATGAACTGCAGTCCGTCAACCAGTTCACCGGC
CGCGACTCCATCGAATTTGCCGACAGAATCAAGGATATTCAGATGCGCGC
CTTGGCGCCCAGCAACATGTTAGCTGCTGTCCCCATGGACGCGGACAACT
CGATCGTTGCCGTGGCAAGACCCGTGAACGACAGCATCGACCCCGAGACG
GGGCTGCGCATCGCTACGGCGACATGCAGCGAGAGCGTGCGGGGCCCCGA
GACGTCGATTTGCAACGAGGCGGCGAAAATGGGCTTCAAACTCGGCGAAA
AAGCCGGACAGGTGGGCAAAATGGCAAAGAGCCTGTACCGTAAGCGGCAC
GGGGTCGCAGCTGCTGCCAACATCCCCAAGCGACACACTATTTTCCGGGG
AAAGCCCTTCAGCGAAAACACGCACTGGCAACGCGATGCCGACATAATTC
AAGAAGCCATCCGCATCGTATGCGGCCTGGAGGACATTCCTCGGGGAAAG
ACCGCTCAAACGCTCTTCAATTTTTTCCCGAGTGCGTGCCAATCTGAATG
CCAAACTTGCGAGATGGAAATGTAG

Coding sequence (CDS) from alignment at Scaffold_344:245171..254595+

>EsuBft103_25a-0001 ID=EsuBft103_25a-0001|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_344:245171..254595+ (Ectocarpus subulatus male Bft15b)
ATGGACAGGTTTGTAGTCTCCCCTGCCAGCTCGCCGTCTGCTGCAGACCC
CGGCAGTGGTGCTGATGATGCAGGGGGTGGGACCGTAGTGTGCGCATCCA
CGAAGACACAGCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATT
GCAGCCGGGGAGTGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTC
GTTCATTGCGCCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACA
ACGAGGGGGCTCTCGCGTTGGTGCAGAACCCTTTCAGCTCGGCGGGGAGC
AAGCATATCGACGTGCGGTTCCACTTCATCCGCGAGCTCTTCAAGGCGGG
CAAGATCACCGCAGATTATATCTCGACAGAAGAGCAGCGCGCCGATATGC
TGACCAAGGTCCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTG
ATGAACCTGCCGATGGCGTACCAGAATTTTGTTTTGGACCAGAGCCCTGC
CAAAAAGCAACGGTCGGAAGCGCCGTTCTGGTTCAATTTCGCATCGGGGG
AGCAGAAGAGAGACTATGTGTCCGTCATGGCGAACAAAGCGATGACCTTG
GAGCAGATGGACTTGTGCAAAACTCTGAAGGATGAACTGCAGTCCGTCAA
CCAGTTCACCGGCCGCGACTCCATCGAATTTGCCGACAGAATCAAGGATA
TTCAGATGCGCGCCTTGGCGCCCAGCAACATGTTAGCTGCTGTCCCCATG
GACGCGGACAACTCGATCGTTGCCGTGGCAAGACCCGTGAACGACAGCAT
CGACCCCGAGACGGGGCTGCGCATCGCTACGGCGACATGCAGCGAGAGCG
TGCGGGGCCCCGAGACGTCGATTTGCAACGAGGCGGCGAAAATGGGCTTC
AAACTCGGCGAAAAAGCCGGACAGGTGGGCAAAATGGCAAAGAGCCTGTA
CCGTAAGCGGCACGGGGTCGCAGCTGCTGCCAACATCCCCAAGCGACACA
CTATTTTCCGGGGAAAGCCCTTCAGCGAAAACACGCACTGGCAACGCGAT
GCCGACATAATTCAAGAAGCCATCCGCATCGTATGCGGCCTGGAGGACAT
TCCTCGGGGAAAGACCGCTCAAACGCTCTTCAATTTTTTCCCGAGTGCGT
GCCAATCTGAATGCCAAACTTGCGAGATGGAAATGTAG