EsuBft839_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft839_13a-0001
Unique Name	EsuBft839_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:324415..325545 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FYJ3
ProteomeId	EsuBft839_13
Protein domains	IPR012816
Protein domains	PTHR11079
Protein domains	SSF143990
Owner	apollo_admin@sb-roscoff.fr
Note	Uncharacterized protein R617 OS:Acanthamoeba polyphaga mimivirus GN:MIMI [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1131
Evalue	5.84e-56
EggNOG OGs	COG3236@1\|root,2S4FY@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K09935
Description	Domain of unknown function (DUF1768)
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft839_13a	EsuBft839_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 324415..325545 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_13a-0001-exon	EsuBft839_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 324415..325545 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_13a-0001-cds	EsuBft839_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 324415..325545 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_13a-0001	EsuBft839_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 324415..325545 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:324415..325545+
coding sequence from alignment at Scaffold_340:324415..325545+

spliced messenger RNA

>EsuBft839_13a-0001 ID=EsuBft839_13a-0001|Name=EsuBft839_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_340:324415..325545+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTGCTAACATTGACCCCACCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCCTGGTCCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCTTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCAATTCATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATTTGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAATGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCGTCGTCGTGAAGAGATCGTGCTTACGGGGTCGTACGCCAAATT
TGCTCAAAACCATGACATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTTTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGTTTCATCCAAGTGGGCGGCTAGCGGTAA
AAACTTGTTGGGAAAAGCTTTGATGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCAAATATTTCCCCGCTTCCAATTATCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATTCATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCCATGGACATCGACGCATTCATGAGGTTGCTACTGCTACA
GGTTCTTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTCTACGTTT
GGAAGCTCCGGGGAACCATGCTCCTGGCGTTCATCTGGTGGCATCAACCT
CCGCTTGTGCAGACCAGCCCCCTCTTCTCGAACATGGACCCGATCTGGTC
GGCGGCACGCTCCTGTTGGACTCGGACNNNN

protein sequence of EsuBft839_13a-0001

>EsuBft839_13 ID=EsuBft839_13|Name=EsuBft839_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=377bp
MASANIDPTGAAALRPPSGSRRVATSPAPASLSGSSPSEKRTRPPGPPPP
VPGARSLPLRPAPAPPFDDKCEYASDDVLLFWKPPSVFSQWTPSAFDVLG
VRYSCGEQFMMSEKAKLFGDLTSYDKIMAATDPKTHKFLGRNVRPFDYAE
WERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRFWGIGMS
ACFPDASVSSKWAASGKNLLGKALMEVRRLLRDHPLSGKYFPASNYPTPP
ISQPPLHGHRRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXSMDIDAFMRLLLLQVLRYGRTRAKTQLVYVWKLRGTMLLAFIWWHQP
PLVQTSPLFSNMDPIWSAARSCWTRTX

mRNA from alignment at Scaffold_340:324415..325545+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft839_13a-0001 ID=EsuBft839_13a-0001|Name=EsuBft839_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_340:324415..325545+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTGCTAACATTGACCCCACCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCCTGGTCCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCTTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCAATTCATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATTTGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAATGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCGTCGTCGTGAAGAGATCGTGCTTACGGGGTCGTACGCCAAATT
TGCTCAAAACCATGACATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTTTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGTTTCATCCAAGTGGGCGGCTAGCGGTAA
AAACTTGTTGGGAAAAGCTTTGATGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCAAATATTTCCCCGCTTCCAATTATCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATTCATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCCATGGACATCGACGCATTCATGAGGTTGCTACTGCTACA
GGTTCTTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTCTACGTTT
GGAAGCTCCGGGGAACCATGCTCCTGGCGTTCATCTGGTGGCATCAACCT
CCGCTTGTGCAGACCAGCCCCCTCTTCTCGAACATGGACCCGATCTGGTC
GGCGGCACGCTCCTGTTGGACTCGGACNNNN

Coding sequence (CDS) from alignment at Scaffold_340:324415..325545+

>EsuBft839_13a-0001 ID=EsuBft839_13a-0001|Name=EsuBft839_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1131bp|location=Sequence derived from alignment at Scaffold_340:324415..325545+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTGCTAACATTGACCCCACCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCCTGGTCCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCTTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCAATTCATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATTTGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAATGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCGTCGTCGTGAAGAGATCGTGCTTACGGGGTCGTACGCCAAATT
TGCTCAAAACCATGACATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTTTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGTTTCATCCAAGTGGGCGGCTAGCGGTAA
AAACTTGTTGGGAAAAGCTTTGATGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCAAATATTTCCCCGCTTCCAATTATCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATTCATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCCATGGACATCGACGCATTCATGAGGTTGCTACTGCTACA
GGTTCTTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTCTACGTTT
GGAAGCTCCGGGGAACCATGCTCCTGGCGTTCATCTGGTGGCATCAACCT
CCGCTTGTGCAGACCAGCCCCCTCTTCTCGAACATGGACCCGATCTGGTC
GGCGGCACGCTCCTGTTGGACTCGGACNNNN