EsuBft984_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft984_3a-0001
Unique NameEsuBft984_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:244554..246454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85923
ProteomeIdEsuBft984_3
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl4776|Peronosporales
Length1619
Hectar predicted targeting categoryother localisation
Evalue2.81e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft984_3aEsuBft984_3aEctocarpus subulatus male Bft15bgeneScaffold_339 244554..246454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_3a-0001EsuBft984_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 244640..246454 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_3a-0001-exonagat-exon-15089Ectocarpus subulatus male Bft15bexonScaffold_339 244554..245117 +
EsuBft984_3a-0001-exonagat-exon-15088Ectocarpus subulatus male Bft15bexonScaffold_339 245242..245692 +
EsuBft984_3a-0001-exonEsuBft984_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 245755..246052 +
EsuBft984_3a-0001-exonagat-exon-15090Ectocarpus subulatus male Bft15bexonScaffold_339 246149..246454 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_3a-0001-exonagat-five_prime_utr-15495Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 244554..244639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_3a-0001-cdsEsuBft984_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 244640..245117 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft984_3a-0001 ID=EsuBft984_3a-0001|Name=EsuBft984_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1619bp|location=Sequence derived from alignment at Scaffold_339:244554..246454+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCACGAGACATTGCTCAGGAGCACGGCGGGGCAGCAGGGAGTGCAGCTG
ACGGATGGACCGCTGCTACCCTGTGTTGGCTGTTCGATGTCCAAGGGGCA
GGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGCACTGCTACCTCTCG
CAGATGACGACGAGGGCGGGAAGGGCGAGAGCAGAGCGGATGCATCACGC
CACGGTTGCGGGGGAGAGAGAGACTCAGAGAGTGAGTCCGACCTCAACGT
GATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGTAAGGAGG
CGCCGACGGCACCCGGCAACGGGATTCCGGGGGGCGGAGGCAGCGTTCCC
CCGTTGCCCCCTTCGGGAAGGGGCGACTCCGGCGGAGGCAGTGACAGCCC
CACCGACAGCAGCAGCAGCAGCCCGAGCAGCAGCCCGAGCAGCAGCCCGA
GCAGCAGCAGCAGTGACGCCGGCGGTGCCGGCGGCCCGGGCGGCGAAAAT
CAGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCC
GAGGACCTCGAGGAACCCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGC
CCGGAGAAACACCGGACCCGGAAGAGGTATTGCTGGCGACCATCCTGGAA
ACTGGCGGGACGGGGATTCTTGAGGACTACATCTGCAACTCGTTTGTGAA
GGAGAAGTGGGACGAGGAGCAGACACGCCGTATGGAGGAGATGTACAGGC
GCGAGATACAGGAGGTGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAG
GTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGACCCACAGCTAAGGCC
GAAGCGAGATGACGAGCTCGCGGTGGATAAGCCTGTGAGGGAGGCGATCG
GATGTCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCAGTGCCTCGG
AACAAGCTCCAGAAGATCGCCCACTCATCCACCAGGAGGATATGGAACGC
GCTTGTGCGGATCATGCCGAAGCGAGATGACGAGCTCGCGGTGGATAAGC
CTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCTGACGAGGCTA
GACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCACGCACCCAC
CGGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTCCCTGATCTTTA
CGAAGGACTTCGGCATGACCTACGCACGGGGGTCAGGACTAGACCTAAGC
GTGTTTGTCGATGCTAGCTACGCTGACAACGAAGTAGACAGGCGTTCTAT
GACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTCTGCGCGTGGCGGTCTGT
CGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGAGGAC
AACAAGGGGGCTCTCGCCTTAGTCGAGAACCCGTTCAGCTCAGCGAGGAG
CAAGCACATCTACGTGCGGTTCCATTTCGTTCGCGAGCTATTCAAGTCGG
GCCAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGAAATG
CTGACCAAGGTCCTTGGCAGAGAAAAGTTAGAGTACCACCAGAAGGCTCT
GATGAACCTACCGATGTAG
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protein sequence of EsuBft984_3a-0001

>EsuBft984_3 ID=EsuBft984_3|Name=EsuBft984_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=510bp
MSKGQVKPVQKSTSTRALLPLADDDEGGKGESRADASRHGCGGERDSESE
SDLNVMEARGPGQATPFVRKEAPTAPGNGIPGGGGSVPPLPPSGRGDSGG
GSDSPTDSSSSSPSSSPSSSPSSSSSDAGGAGGPGGENQATQVGTAVAMV
IPATPRTSRNPGDARCRGDAGPGETPDPEEVLLATILETGGTGILEDYIC
NSFVKEKWDEEQTRRMEEMYRREIQEVLGPEQQAFGAEVDASGSSQPLPD
PQLRPKRDDELAVDKPVREAIGCLMWTKLTRPDIAVPRNKLQKIAHSSTR
RIWNALVRIMPKRDDELAVDKPVREAIGCLMWTKLTRLDIALPLNKLQKI
AHAPTGRIWNALVRIMSSLIFTKDFGMTYARGSGLDLSVFVDASYADNEV
DRRSMTGLAGVKEALSARGGLSFIAPETSGAKIKVLEDNKGALALVENPF
SSARSKHIYVRFHFVRELFKSGQITAEYVPTGEQHAEMLTKVLGREKLEY
HQKALMNLPM
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mRNA from alignment at Scaffold_339:244554..246454+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft984_3a-0001 ID=EsuBft984_3a-0001|Name=EsuBft984_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1901bp|location=Sequence derived from alignment at Scaffold_339:244554..246454+ (Ectocarpus subulatus male Bft15b)
CCCACGAGACATTGCTCAGGAGCACGGCGGGGCAGCAGGGAGTGCAGCTG
ACGGATGGACCGCTGCTACCCTGTGTTGGCTGTTCGATGTCCAAGGGGCA
GGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGCACTGCTACCTCTCG
CAGATGACGACGAGGGCGGGAAGGGCGAGAGCAGAGCGGATGCATCACGC
CACGGTTGCGGGGGAGAGAGAGACTCAGAGAGTGAGTCCGACCTCAACGT
GATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGTAAGGAGG
CGCCGACGGCACCCGGCAACGGGATTCCGGGGGGCGGAGGCAGCGTTCCC
CCGTTGCCCCCTTCGGGAAGGGGCGACTCCGGCGGAGGCAGTGACAGCCC
CACCGACAGCAGCAGCAGCAGCCCGAGCAGCAGCCCGAGCAGCAGCCCGA
GCAGCAGCAGCAGTGACGCCGGCGGTGCCGGCGGCCCGGGCGGCGAAAAT
CAGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCC
GAGGACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTACCTCCG
CGGGCTAGAAGGGAAGAAATTCCTCTGGGGCGCCTCGAACGCTGGCCCGC
TGCGCCACGGGCTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATG
CAAGGTGCCGGGGAGATGCCGGGCCCGGAGAAACACCGGACCCGGAAGAG
GTATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTCTTGAGGA
CTACATCTGCAACTCGTTTGTGAAGGAGAAGTGGGACGAGGAGCAGACAC
GCCGTATGGAGGAGATGTACAGGCGCGAGATACAGGAGGTGTTGGGCCCG
GAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACC
ACTCCCAGACCCACAGCTAAGGCCGAAGCGAGATGACGAGCTCGCGGTGG
ATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCTGACG
AGGCCAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCCACTC
ATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTGA
ACTTCACGAAGNCAGCGGGTCTTCGCAACCACTCCCAGACCCACAGCTAA
GGCCGAAGCGAGATGACGAGCTCGCGGTGGATAAGCCTGTGAGGGAGGCG
ATCGGATGTCTGATGTGGACGAAGCTGACGAGGCTAGACATCGCCCTGCC
TCTGAACAAGCTCCAGAAGATCGCCCACGCACCCACCGGGAGGATATGGA
ACGCGCTTGTGCGGATCATGTCCTCCCTGATCTTTACGAAGGACTTCGGC
ATGACCTACGCACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGC
TAGCTACGCTGACAACGAAGTAGACAGGCGTTCTATGACCGGGCTAGCTG
TGACCGTAGGTGGTACCGTAGTGTGTGCATCTGCCAAGACGCAGCCAGTG
ACGGCTCAGTCGACCTCGGAAGCAGAGTATATGGCAGCCGGGGAGGGCGT
GAAGGAGGCGTTGTCTGCGCGTGGCGGTCTGTCGTTCATAGCGCCCGAGA
CGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCC
TTAGTCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCTACGTGCG
GTTCCATTTCGTTCGCGAGCTATTCAAGTCGGGCCAGATCACTGCAGAGT
ATGTTCCGACTGGAGAGCAGCACGCCGAAATGCTGACCAAGGTCCTTGGC
AGAGAAAAGTTAGAGTACCACCAGAAGGCTCTGATGAACCTACCGATGTA
G
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Coding sequence (CDS) from alignment at Scaffold_339:244554..246454+

>EsuBft984_3a-0001 ID=EsuBft984_3a-0001|Name=EsuBft984_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1533bp|location=Sequence derived from alignment at Scaffold_339:244554..246454+ (Ectocarpus subulatus male Bft15b)
ATGTCCAAGGGGCAGGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGC
ACTGCTACCTCTCGCAGATGACGACGAGGGCGGGAAGGGCGAGAGCAGAG
CGGATGCATCACGCCACGGTTGCGGGGGAGAGAGAGACTCAGAGAGTGAG
TCCGACCTCAACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTT
TGTGCGTAAGGAGGCGCCGACGGCACCCGGCAACGGGATTCCGGGGGGCG
GAGGCAGCGTTCCCCCGTTGCCCCCTTCGGGAAGGGGCGACTCCGGCGGA
GGCAGTGACAGCCCCACCGACAGCAGCAGCAGCAGCCCGAGCAGCAGCCC
GAGCAGCAGCCCGAGCAGCAGCAGCAGTGACGCCGGCGGTGCCGGCGGCC
CGGGCGGCGAAAATCAGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTG
ATCCCGGCGACTCCGAGGACCTCGAGGAACCCGGGAGATGCAAGGTGCCG
GGGAGATGCCGGGCCCGGAGAAACACCGGACCCGGAAGAGGTATTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTCTTGAGGACTACATCTGC
AACTCGTTTGTGAAGGAGAAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCGAGATACAGGAGGTGTTGGGCCCGGAACAGCAGG
CGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGAC
CCACAGCTAAGGCCGAAGCGAGATGACGAGCTCGCGGTGGATAAGCCTGT
GAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCTGACGAGGCCAGACA
TCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCCACTCATCCACCAGG
AGGATATGGAACGCGCTTGTGCGGATCATGCCGAAGCGAGATGACGAGCT
CGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGA
AGCTGACGAGGCTAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATC
GCCCACGCACCCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTC
CTCCCTGATCTTTACGAAGGACTTCGGCATGACCTACGCACGGGGGTCAG
GACTAGACCTAAGCGTGTTTGTCGATGCTAGCTACGCTGACAACGAAGTA
GACAGGCGTTCTATGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTCTGC
GCGTGGCGGTCTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCA
AGGTCCTTGAGGACAACAAGGGGGCTCTCGCCTTAGTCGAGAACCCGTTC
AGCTCAGCGAGGAGCAAGCACATCTACGTGCGGTTCCATTTCGTTCGCGA
GCTATTCAAGTCGGGCCAGATCACTGCAGAGTATGTTCCGACTGGAGAGC
AGCACGCCGAAATGCTGACCAAGGTCCTTGGCAGAGAAAAGTTAGAGTAC
CACCAGAAGGCTCTGATGAACCTACCGATGTAG
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