EsuBft1085_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1085_3a-0001
Unique NameEsuBft1085_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:227009..227517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1085_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length50
Hectar predicted targeting categoryother localisation
Evalue1.52e-64
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_3aEsuBft1085_3aEctocarpus subulatus male Bft15bgeneScaffold_339 227009..227517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_3a-0001-exonEsuBft1085_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 227009..227517 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_3a-0001-exonagat-three_prime_utr-789Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 227009..227047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_3a-0001-cdsEsuBft1085_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 227048..227395 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_3a-0001-exonagat-five_prime_utr-502Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 227396..227517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_3a-0001EsuBft1085_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 227048..227395 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1085_3a-0001 ID=EsuBft1085_3a-0001|Name=EsuBft1085_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=509bp|location=Sequence derived from alignment at Scaffold_339:227009..227517- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTGTTGAAGAGCGCCTACAAAGATCCAGCGCTTCCACCGGCGGTTTCG
CAAGCTCGGTTTCGCAAGCTCCTGCAAGTGCCGGTACGGTACAGGGCACC
CCAGGCATCGGACGTGTCGGCGATGCTCGCGGAGGGAGAGTCCAGAAATC
CCAAGTACGGTCAGTTCCAGCTCTGGGAGCGTTTGAATGTGGATCAAGTG
CCTTTGCCATTCGTGAACGGGCTGATCAACACGTGGGAGAAGACAGGCGC
GTTGCGTGTAGCCATCTCGCAGCACTTTGCTGGCCTAGAGAAAAGGAAGT
GCACCATGCAAGTCATCTTTGGTCCGGGTGAGAAGACTATGCGGATTTCG
GTGATTTTCCGAGGCCAGGGGAAGCGGATTTCGCGGGTGGAGAAAGCCGC
GTATCACAAGGACGTGGGCGTGTTTTTCCAGGAGAATGCGTGGGCGGACC
AAACGTTCTGCATGGAGTAGGCCAAGAGGTCGTACCGCGAAGGCCTGATC
CGCGGGCGG
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protein sequence of EsuBft1085_3a-0001

>EsuBft1085_3 ID=EsuBft1085_3|Name=EsuBft1085_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MLAEGESRNPKYGQFQLWERLNVDQVPLPFVNGLINTWEKTGALRVAISQ
HFAGLEKRKCTMQVIFGPGEKTMRISVIFRGQGKRISRVEKAAYHKDVGV
FFQENAWADQTFCME
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mRNA from alignment at Scaffold_339:227009..227517-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1085_3a-0001 ID=EsuBft1085_3a-0001|Name=EsuBft1085_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=509bp|location=Sequence derived from alignment at Scaffold_339:227009..227517- (Ectocarpus subulatus male Bft15b)
GTCTGTTGAAGAGCGCCTACAAAGATCCAGCGCTTCCACCGGCGGTTTCG
CAAGCTCGGTTTCGCAAGCTCCTGCAAGTGCCGGTACGGTACAGGGCACC
CCAGGCATCGGACGTGTCGGCGATGCTCGCGGAGGGAGAGTCCAGAAATC
CCAAGTACGGTCAGTTCCAGCTCTGGGAGCGTTTGAATGTGGATCAAGTG
CCTTTGCCATTCGTGAACGGGCTGATCAACACGTGGGAGAAGACAGGCGC
GTTGCGTGTAGCCATCTCGCAGCACTTTGCTGGCCTAGAGAAAAGGAAGT
GCACCATGCAAGTCATCTTTGGTCCGGGTGAGAAGACTATGCGGATTTCG
GTGATTTTCCGAGGCCAGGGGAAGCGGATTTCGCGGGTGGAGAAAGCCGC
GTATCACAAGGACGTGGGCGTGTTTTTCCAGGAGAATGCGTGGGCGGACC
AAACGTTCTGCATGGAGTAGGCCAAGAGGTCGTACCGCGAAGGCCTGATC
CGCGGGCGG
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Coding sequence (CDS) from alignment at Scaffold_339:227009..227517-

>EsuBft1085_3a-0001 ID=EsuBft1085_3a-0001|Name=EsuBft1085_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_339:227009..227517- (Ectocarpus subulatus male Bft15b)
ATGCTCGCGGAGGGAGAGTCCAGAAATCCCAAGTACGGTCAGTTCCAGCT
CTGGGAGCGTTTGAATGTGGATCAAGTGCCTTTGCCATTCGTGAACGGGC
TGATCAACACGTGGGAGAAGACAGGCGCGTTGCGTGTAGCCATCTCGCAG
CACTTTGCTGGCCTAGAGAAAAGGAAGTGCACCATGCAAGTCATCTTTGG
TCCGGGTGAGAAGACTATGCGGATTTCGGTGATTTTCCGAGGCCAGGGGA
AGCGGATTTCGCGGGTGGAGAAAGCCGCGTATCACAAGGACGTGGGCGTG
TTTTTCCAGGAGAATGCGTGGGCGGACCAAACGTTCTGCATGGAGTAG
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