EsuBft111_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft111_16a-0001
Unique Name	EsuBft111_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_332	contig	Scaffold_332:205..3832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft111_16
Protein domains	G3DSA
Protein domains	IPR006600
Protein domains	PTHR19446
Protein domains	IPR009057
Protein domains	SSF56672
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1288
Hectar predicted targeting category	other localisation
Evalue	1.94e-93
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0003677

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft111_16a	EsuBft111_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_332 205..3832 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft111_16a-0001-exon	agat-exon-52294	Ectocarpus subulatus male Bft15b	exon	Scaffold_332 205..698 +
EsuBft111_16a-0001-exon	agat-exon-52295	Ectocarpus subulatus male Bft15b	exon	Scaffold_332 2895..2974 +
EsuBft111_16a-0001-exon	EsuBft111_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_332 3119..3832 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft111_16a-0001-exon	agat-five_prime_utr-719	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_332 205..226 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft111_16a-0001-cds	EsuBft111_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_332 227..698 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft111_16a-0001	EsuBft111_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_332 227..3832 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_332:205..3832+
coding sequence from alignment at Scaffold_332:205..3832+

spliced messenger RNA

>EsuBft111_16a-0001 ID=EsuBft111_16a-0001|Name=EsuBft111_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1288bp|location=Sequence derived from alignment at Scaffold_332:205..3832+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCAGGTGGAAAAGGCTGTGATGGAGCTCCTCACACACGCGCGGGCGC
ATGGTCTGCCTGTGGATCGGTTGGCCATCCAGGCCTTTGGGCGCAAAGCG
AAAGCAACTGTCGCGGCCAAGGCATCAACACCTGCAGAACGTGACCGACT
CGACAAGTTCATCGCCTCTGAGGGGTGGGCAAAGAAGTTCATCGCTCGCC
ACAACCTCAAGTCCAGGAAGCTGCACGGCCAGTCGGGAAGCGTCGATGAT
GCAGCTATCGCCGACGGACTCCGCAAGGTCCGAGAGATGATCGCGAAGTA
CGACCCGGACAACGACGACCTGGTTGAGCTACGCCAATCGGGACAGTCGG
CGGCGGCAGCGGCCCCGGCTCCGCCGCCGTACGCGAATGTAGCAACCCAT
TTTGGTGAACTCGAGGATACTGCCGAGAAGTGCCGCATGTCCGAAGTGTC
TTTTCACCTCCGCAAGGCTAAGCTAGCGTGGATGAGTGCCTACGGGAGAA
TCATCCAAGGTAGAAAGAGGGCGGGTAAGCCGACGTACTGCTTCTTCCTG
GACGTAAAAATGGCATACGACACCGGGGTCCCTCAAGGTTGCACGCTGTC
CCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGG
CAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGA
ATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACT
GCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGT
CTGCTAACGTTAAGAAGAGTACCGTCGTCATTGTATGCAACGAGAACAAG
GAGACAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGT
GGACCAGTACACATACCTTGGAGTAGAGATCGCAAAAGACTGCTCGTGGA
ATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGGGAAG
CTGCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGAC
GGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTAT
GGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAA
GCAGCGAAAATCATCCTAGGATGCTCCACGCGCACAAGTAATGCAGCCGT
GAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACACGAGGA
AGCTGACATTTCAGTATCGCATGTGTGGGATGGGATAG

protein sequence of EsuBft111_16a-0001

>EsuBft111_16 ID=EsuBft111_16|Name=EsuBft111_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MELLTHARAHGLPVDRLAIQAFGRKAKATVAAKASTPAERDRLDKFIASE
GWAKKFIARHNLKSRKLHGQSGSVDDAAIADGLRKVREMIAKYDPDNDDL
VELRQSGQSAAAAAPAPPPYANVATHFGELEDTAEKCRMSEVSFHLRKAK
LAWMSAYGRIIQGRKRAGKPTYCFFLDVKMAYDTGVPQGCTLSPTLFQVF
INDLLEVVEAVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGLQLQIDAA
KKFTDKWRLSANVKKSTVVIVCNENKETVEHRWKWGIEEIAVVDQYTYLG
VEIAKDCSWNAHMSKVAEKGKSRAGKLHPILANRHLDTRIKLTVLKSVIV
PPLEYAGEVWEGNKKVVKELEAAQMKAAKIILGCSTRTSNAAVRAELGIQ
SLRSGRDTRKLTFQYRMCGMG

mRNA from alignment at Scaffold_332:205..3832+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft111_16a-0001 ID=EsuBft111_16a-0001|Name=EsuBft111_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3628bp|location=Sequence derived from alignment at Scaffold_332:205..3832+ (Ectocarpus subulatus male Bft15b)
TTGGCAGGTGGAAAAGGCTGTGATGGAGCTCCTCACACACGCGCGGGCGC
ATGGTCTGCCTGTGGATCGGTTGGCCATCCAGGCCTTTGGGCGCAAAGCG
AAAGCAACTGTCGCGGCCAAGGCATCAACACCTGCAGAACGTGACCGACT
CGACAAGTTCATCGCCTCTGAGGGGTGGGCAAAGAAGTTCATCGCTCGCC
ACAACCTCAAGTCCAGGAAGCTGCACGGCCAGTCGGGAAGCGTCGATGAT
GCAGCTATCGCCGACGGACTCCGCAAGGTCCGAGAGATGATCGCGAAGTA
CGACCCGGACAACGACGACCTGGTTGAGCTACGCCAATCGGGACAGTCGG
CGGCGGCAGCGGCCCCGGCTCCGCCGCCGTACGCGAATGTAGCAACCCAT
TTTGGTGAACTCGAGGATACTGCCGAGAAGTGCCGCATGTCCGAAGTGTC
TTTTCACCTCCGCAAGGCTAAGCTAGCGTGGATGAGTGCCTACGGTTCGA
GGGAAACCAAGGAGACGTGCATGAGCGACTTCCTTTGACGGTTGCAGCGC
AGATCGTGTTCAGGCTGACAGGTCGCCAGGGTAGCGTTGGTTTTTTGGGT
TTGTGTTATTTGTACGGCGAGTGATGTTTTGATATTGTGAAGCTCTTTTT
TTATCGTTGACTTGTGTTCTTGTCGGGGGTTTAAATCGATGGGATGAGAG
GTATGAGGGTGTTATGTTGAGGGTACGGTGGGAGGAAGGGGTGCATTGTG
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACGGTAGGGAGAATCAT
CCAAGGTAGAAAGAGGGCGGGTAAGCCGACGTACTGCTTCTTCCTGGACG
TAAAAATGGCATACGACACCGTATGGCGAAACGGGTTGTGGAAACAACTG
TCCAAATACGGGATCTAGGGGGAAATTTGGAGAGTTGTGAAGAAGATGAC
AGAGTGTACGAAAAGCGCGGTCTTGCTAGACGGAGAACTGCCTAAATTCT
TCGACATTTAGCAGGGGGTCCCTCAAGGTTGCACGCTGTCCCCAACATTG
TTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAA
GGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTG
CGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAA
ATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCTAACGT
TAAGAAGAGTACCGTCGTCATTGTATGCAACGAGAACAAGGAGACAGTAG
AACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTAC
ACATACCTTGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACAT
GTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGGGAAGCTGCATCCAA
TACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAG
AGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAA
TAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAA
TCATCCTAGGATGCTCCACGCGCACAAGTAATGCAGCCGTGAGGGCAGAA
TTGGGGATCCAATCCCTACGGTCGGGAAGAGACACGAGGAAGCTGACATT
TCAGTATCGCATGTGTGGGATGGGATAG

Coding sequence (CDS) from alignment at Scaffold_332:205..3832+

>EsuBft111_16a-0001 ID=EsuBft111_16a-0001|Name=EsuBft111_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_332:205..3832+ (Ectocarpus subulatus male Bft15b)
ATGGAGCTCCTCACACACGCGCGGGCGCATGGTCTGCCTGTGGATCGGTT
GGCCATCCAGGCCTTTGGGCGCAAAGCGAAAGCAACTGTCGCGGCCAAGG
CATCAACACCTGCAGAACGTGACCGACTCGACAAGTTCATCGCCTCTGAG
GGGTGGGCAAAGAAGTTCATCGCTCGCCACAACCTCAAGTCCAGGAAGCT
GCACGGCCAGTCGGGAAGCGTCGATGATGCAGCTATCGCCGACGGACTCC
GCAAGGTCCGAGAGATGATCGCGAAGTACGACCCGGACAACGACGACCTG
GTTGAGCTACGCCAATCGGGACAGTCGGCGGCGGCAGCGGCCCCGGCTCC
GCCGCCGTACGCGAATGTAGCAACCCATTTTGGTGAACTCGAGGATACTG
CCGAGAAGTGCCGCATGTCCGAAGTGTCTTTTCACCTCCGCAAGGCTAAG
CTAGCGTGGATGAGTGCCTACGGGAGAATCATCCAAGGTAGAAAGAGGGC
GGGTAAGCCGACGTACTGCTTCTTCCTGGACGTAAAAATGGCATACGACA
CCGGGGTCCCTCAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTC
ATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGT
AGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTG
TCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCG
AAGAAGTTTACTGATAAGTGGAGATTGTCTGCTAACGTTAAGAAGAGTAC
CGTCGTCATTGTATGCAACGAGAACAAGGAGACAGTAGAACATAGATGGA
AGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTTGGA
GTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGC
GGAAAAGGGCAAATCACGAGCAGGGAAGCTGCATCCAATACTCGCAAACC
GGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTA
CCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGT
GAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCTAGGAT
GCTCCACGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAA
TCCCTACGGTCGGGAAGAGACACGAGGAAGCTGACATTTCAGTATCGCAT
GTGTGGGATGGGATAG