EsuBft1980_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1980_8a-0001
Unique NameEsuBft1980_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_329contigScaffold_329:82235..82896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1980_8
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length66
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_8aEsuBft1980_8aEctocarpus subulatus male Bft15bgeneScaffold_329 82235..82896 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_8a-0001-exonEsuBft1980_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_329 82235..82896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_8a-0001-cdsEsuBft1980_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_329 82235..82519 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_8a-0001-exonagat-three_prime_utr-7428Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_329 82520..82896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_8a-0001EsuBft1980_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_329 82235..82519 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1980_8a-0001 ID=EsuBft1980_8a-0001|Name=EsuBft1980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=662bp|location=Sequence derived from alignment at Scaffold_329:82235..82896+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCCGCGATGTTTGGGCCCGCCGTTTTCGCAACACAGTGCTGCCT
GTTGGCGCACACTTCTGGTACAAGGCTCAAGACGCGCTATGGTGGCCAGG
GAAAATCTCCGGACATACTCCAACTACAAACGTCTTCTTCGTTCGCTTCC
TGGATGACCCCGGACCTGTCAAGATCACCCTCCCCCCTTCGCGCTACACG
ACAGCTTTGGGAGCTGTTTGTGGTTCTTGGTGCCTTCAGCTGCACCGACG
TAGTCCCTTCATGCGAGGTATCTTGCGCAATGTAGACGAATCGTGTGGTA
CGGATATTATTGCCCCTGGCCGATAGGACTGTTGCATTTGTTTTATGTGT
TTAGACCTATATGTATATGTATTTGTTTGTCTGTTACATGTTTGTGTTTA
TGTACGTATTTGTGTTTTCTCGCTCGCCCTCTCGATATAGTTTGAGACTG
GCTATTGCTTCTTTATGTTTCTAGCTCGCCCTCTCGATCTATTTTTGAGA
CTGGCTATTGCTTCGGTATGTTTCTAGCTCGCCCTCTCGATTATTTCGAG
ACTGACTATTGCGTCTTTATGCTTTCCGCTCGCCCTCTCAATCCCTTTGA
GTCTGGCGCTTCCTTTTGTGTTGCGTACTTTCTCGCCCCCGTTTGTCACT
TCTCGGTCGGTT
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protein sequence of EsuBft1980_8a-0001

>EsuBft1980_8 ID=EsuBft1980_8|Name=EsuBft1980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MFPAMFGPAVFATQCCLLAHTSGTRLKTRYGGQGKSPDILQLQTSSSFAS
WMTPDLSRSPSPLRATRQLWELFVVLGAFSCTDVVPSCEVSCAM
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mRNA from alignment at Scaffold_329:82235..82896+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1980_8a-0001 ID=EsuBft1980_8a-0001|Name=EsuBft1980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=662bp|location=Sequence derived from alignment at Scaffold_329:82235..82896+ (Ectocarpus subulatus male Bft15b)
ATGTTCCCCGCGATGTTTGGGCCCGCCGTTTTCGCAACACAGTGCTGCCT
GTTGGCGCACACTTCTGGTACAAGGCTCAAGACGCGCTATGGTGGCCAGG
GAAAATCTCCGGACATACTCCAACTACAAACGTCTTCTTCGTTCGCTTCC
TGGATGACCCCGGACCTGTCAAGATCACCCTCCCCCCTTCGCGCTACACG
ACAGCTTTGGGAGCTGTTTGTGGTTCTTGGTGCCTTCAGCTGCACCGACG
TAGTCCCTTCATGCGAGGTATCTTGCGCAATGTAGACGAATCGTGTGGTA
CGGATATTATTGCCCCTGGCCGATAGGACTGTTGCATTTGTTTTATGTGT
TTAGACCTATATGTATATGTATTTGTTTGTCTGTTACATGTTTGTGTTTA
TGTACGTATTTGTGTTTTCTCGCTCGCCCTCTCGATATAGTTTGAGACTG
GCTATTGCTTCTTTATGTTTCTAGCTCGCCCTCTCGATCTATTTTTGAGA
CTGGCTATTGCTTCGGTATGTTTCTAGCTCGCCCTCTCGATTATTTCGAG
ACTGACTATTGCGTCTTTATGCTTTCCGCTCGCCCTCTCAATCCCTTTGA
GTCTGGCGCTTCCTTTTGTGTTGCGTACTTTCTCGCCCCCGTTTGTCACT
TCTCGGTCGGTT
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Coding sequence (CDS) from alignment at Scaffold_329:82235..82896+

>EsuBft1980_8a-0001 ID=EsuBft1980_8a-0001|Name=EsuBft1980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_329:82235..82896+ (Ectocarpus subulatus male Bft15b)
ATGTTCCCCGCGATGTTTGGGCCCGCCGTTTTCGCAACACAGTGCTGCCT
GTTGGCGCACACTTCTGGTACAAGGCTCAAGACGCGCTATGGTGGCCAGG
GAAAATCTCCGGACATACTCCAACTACAAACGTCTTCTTCGTTCGCTTCC
TGGATGACCCCGGACCTGTCAAGATCACCCTCCCCCCTTCGCGCTACACG
ACAGCTTTGGGAGCTGTTTGTGGTTCTTGGTGCCTTCAGCTGCACCGACG
TAGTCCCTTCATGCGAGGTATCTTGCGCAATGTAG
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