EsuBft1122_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1122_4a-0001
Unique Name	EsuBft1122_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_319	contig	Scaffold_319:617108..619515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	946362.XP_004988912.1
ProteomeId	EsuBft1122_4
Protein domains	Coil
Protein domains	G3DSA
Protein domains	IPR000477
Protein domains	SSF56672
Protein domains	PTHR10178
Protein domains	PF14223
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon	3
Max annot lvl	33154\|Opisthokonta
Length	1860
Hectar predicted targeting category	other localisation
Evalue	1.22e-72
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,39ZVA@33154\|Opisthokonta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	dUTP metabolic process
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_4a	EsuBft1122_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_319 617108..619515 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_4a-0001-exon	agat-exon-1252	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 617108..618287 +
EsuBft1122_4a-0001-exon	EsuBft1122_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 618647..618988 +
EsuBft1122_4a-0001-exon	agat-exon-1251	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 619178..619515 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_4a-0001-cds	EsuBft1122_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_319 617108..618287 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_4a-0001	EsuBft1122_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_319 617108..619515 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_319:617108..619515+
coding sequence from alignment at Scaffold_319:617108..619515+

spliced messenger RNA

>EsuBft1122_4a-0001 ID=EsuBft1122_4a-0001|Name=EsuBft1122_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1860bp|location=Sequence derived from alignment at Scaffold_319:617108..619515+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGCTTGGTAACGTTTTTCGCGAATATCATGATGTGTTCTCGAG
TTCTCCGACCGACTTTGGATCTTGTTCGCTTGTTCCTTATAAGCTTACAG
TTCCTCCTGGTAGTGCACCCGTCACGTCTCGCCCCTACCGCGTTAATCCC
CCGGTGGCGAAACAAGTTGACGCGATCCTTGACCAATACCTTGCGGCAGG
TTTGATTCAACGTTCGACCTCGCGTTACTCGAGGCCTTTGGTAGTCATAC
CGAAGAAATCTGGTGGTGTTCGCATCACCGTCAATTATCGCAAGCTCAAC
AAGCTTTGCGCTTTGAGTCAGCTTCCGATTTCTCAAGTCGATGATACTTT
GGACAAGTTGTTGAAAGGGCGAATTTATTCCCTTCTCGACACGAAATCTT
CGTTTCACCAAATCACGGTGCACCGCGATACAACCCCTTTGACGGCATTC
GTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAGATGCCTCAAGGCAGTTC
GACTGCCCCTGGGTGGTTTTGCAAGGTTGTCAACGAAGTCATCAGAACAG
TCCGCGGTGCTGCATCGTACTTGGATGATTTGATCGTCTTTGATGACACC
CCTGCTAATCATGTTGGTACCATGCGTGCCCTCTTTGAACGCTTGCGTAC
GCACAGCTTGAAACTCACGCCTCCGAAAGCTACTATTGGCGCTACTGAAG
CAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTCGGCCTAACGGT
GCCAAGGTTTCGGCCCTCACCAAAATGCCTATGCCCGAGGATGTCAAGCA
ACTACGTTCCCTTCTCGATGGTCTCAGCTACTACCGCAAGTTCCTCCCCA
ACATGGCTAAACGCATTCGATATCTGACTACTCTACTCAAGAAGCAGGAG
AACTTTGTCTTCACCCTTTCCATGGAGCAAGCCGTTCGCGTTTTTTTAGC
TGAGTTGGCCAATCCTCCTGTTTTAGTTTATCCAGATTGGGATGCCGTTT
CAGACGCCTCGCGACCTTTTCATCCCTACTGTGATGCTAGTCGCGATGGG
TTTGGTGAGACTCTAGAACAAGAACAGCCAGATGGTTTCGTTTGCTCAAT
TGTCTTCATCAGTCGGGCTACTTTGGACTCAGAACGTCACTGGACACCCC
GCGATCTCGAGGCGGGTAGCATCGTGTGGTCCGAAAGTGCAGCGGGGGAA
GCGGCAGCCGCGGCAGCCAAGGTAGCGGATCTGCAGAGGAGAGTTGAGGA
GACAGAGGAGAGGAGTTCAGCGGAGGACGCTACTAGAGATAGGGTGGATG
ATGCCGGATACACGGCTGGTAACTTAAGGATGGACGGTGCCGGCTATGCG
CCTGGGTACATTAGGGATGGAGCCGCCGGGGGGGCAGCCACTTTTGGAGC
CAGGGGAGCGGCTACTTTTTTGCAGGATGATCGAATGCAGCGTAGGGACC
GGAAGCCACCGGTGTACGACGGCAACTTCCCGCTCTTCAAGAGGGTGTTC
GAGGCCTTCCTCAGCTGCGAAGTGTTTGGGGCGTGGGAGGCTGCCCACGA
GTTCTGCCTCCCGATGAGTGACCCCGAGAAGCAGGCCCTGAAGCTGTCTC
TCACCAACATGAAGATGAAGCTCGGAGAGGAACCGAGGGATTACTTTCTT
AGGTTTCACAAGGTGCTGTCTACAATTCGTGCCGTCAACGGCGATGAGGT
CACAGACCGAGAGGTCCTTGCGATGCTGCGTAGGAATCTCTTGGCCGACT
ACGACCAGCTCAAGCCGCTTCTCATGCATAATCGCGCGCTCACACGCTCG
AGTTTGGAGACTCTTGTGCGTAGCCACCACGTTGAGCAAGACCTCGGTAA
TGGTGTGTAG

protein sequence of EsuBft1122_4a-0001

>EsuBft1122_4 ID=EsuBft1122_4|Name=EsuBft1122_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=619bp
MAQLGNVFREYHDVFSSSPTDFGSCSLVPYKLTVPPGSAPVTSRPYRVNP
PVAKQVDAILDQYLAAGLIQRSTSRYSRPLVVIPKKSGGVRITVNYRKLN
KLCALSQLPISQVDDTLDKLLKGRIYSLLDTKSSFHQITVHRDTTPLTAF
VTSSGLFEWLKMPQGSSTAPGWFCKVVNEVIRTVRGAASYLDDLIVFDDT
PANHVGTMRALFERLRTHSLKLTPPKATIGATEADFLGHTISPDGVRPNG
AKVSALTKMPMPEDVKQLRSLLDGLSYYRKFLPNMAKRIRYLTTLLKKQE
NFVFTLSMEQAVRVFLAELANPPVLVYPDWDAVSDASRPFHPYCDASRDG
FGETLEQEQPDGFVCSIVFISRATLDSERHWTPRDLEAGSIVWSESAAGE
AAAAAAKVADLQRRVEETEERSSAEDATRDRVDDAGYTAGNLRMDGAGYA
PGYIRDGAAGGAATFGARGAATFLQDDRMQRRDRKPPVYDGNFPLFKRVF
EAFLSCEVFGAWEAAHEFCLPMSDPEKQALKLSLTNMKMKLGEEPRDYFL
RFHKVLSTIRAVNGDEVTDREVLAMLRRNLLADYDQLKPLLMHNRALTRS
SLETLVRSHHVEQDLGNGV

mRNA from alignment at Scaffold_319:617108..619515+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1122_4a-0001 ID=EsuBft1122_4a-0001|Name=EsuBft1122_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2408bp|location=Sequence derived from alignment at Scaffold_319:617108..619515+ (Ectocarpus subulatus male Bft15b)
ATGGCTCAGCTTGGTAACGTTTTTCGCGAATATCATGATGTGTTCTCGAG
TTCTCCGACCGACTTTGGATCTTGTTCGCTTGTTCCTTATAAGCTTACAG
TTCCTCCTGGTAGTGCACCCGTCACGTCTCGCCCCTACCGCGTTAATCCC
CCGGTGGCGAAACAAGTTGACGCGATCCTTGACCAATACCTTGCGGCAGG
TTTGATTCAACGTTCGACCTCGCGTTACTCGAGGCCTTTGGTAGTCATAC
CGAAGAAATCTGGTGGTGTTCGCATCACCGTCAATTATCGCAAGCTCAAC
AAGCTTTGCGCTTTGAGTCAGCTTCCGATTTCTCAAGTCGATGATACTTT
GGACAAGTTGTTGAAAGGGCGAATTTATTCCCTTCTCGACACGAAATCTT
CGTTTCACCAAATCACGGTGCACCGCGATACAACCCCTTTGACGGCATTC
GTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAGATGCCTCAAGGCAGTTC
GACTGCCCCTGGGTGGTTTTGCAAGGTTGTCAACGAAGTCATCAGAACAG
TCCGCGGTGCTGCATCGTACTTGGATGATTTGATCGTCTTTGATGACACC
CCTGCTAATCATGTTGGTACCATGCGTGCCCTCTTTGAACGCTTGCGTAC
GCACAGCTTGAAACTCACGCCTCCGAAAGCTACTATTGGCGCTACTGAAG
CAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTCGGCCTAACGGT
GCCAAGGTTTCGGCCCTCACCAAAATGCCTATGCCCGAGGATGTCAAGCA
ACTACGTTCCCTTCTCGATGGTCTCAGCTACTACCGCAAGTTCCTCCCCA
ACATGGCTAAACGCATTCGATATCTGACTACTCTACTCAAGAAGCAGGAG
AACTTTGTCTTCACCCTTTCCATGGAGCAAGCCGTTCGCGTTTTTTTAGC
TGAGTTGGCCAATCCTCCTGTTTTAGTTTATCCAGATTGGGATGCCGTTT
CAGACGCCTCGCGACCTTTTCATCCCTACTGTGATGCTAGTCGCGATGGG
TTTGGTGAGACTCTAGAACAAGAACAGCCAGATGGTTTCGTTTGCTCAAT
TGTCTTCATCAGTCGGGCTACTTTGGACTCAGAACGTCACTGGACACCCC
GCGATCTCGAGGCGGGTAGCATCGTGTGGTGTACGCGGTTACTTGTGGGG
CACGAAATATCGCATTTTTACCGACCACAAATCTCTCGAGCATTTTGCTG
AGGTGGGGGAGAACAATGCCCGCGTTCAGAGCTGGCTGGAATTTCTTACC
GCCTACAATTACACTCTCAAGTATCGCAAGGGTTCCGCAAATGGCAACGC
TGATTTCCTCTCACGCCTCCCTTGCACCCAGTCTCAACACCACAGACCGC
TGAGGGCGGCAGTGCACACTACCACGATATCGAGAGTGGAGCCTAGCTAG
GCCAGGTGTTGAATCAGCGATAACGAAAGCACGAGAGAAAGAATTAGAAG
AAGAAATGGAGAAGAAAATGCAGGAAGCCGAAAGTGCAGCCGAAAGTGCA
GCGGGGGAAGCGGCAGCCGCGGCAGCCAAGGTAGCGGATCTGCAGAGGAG
AGTTGAGGAGACAGAGGAGAGGAGTTCAGCGGAGGACGCTACTAGAGATA
GGGTGGATGATGCCGGATACACGGCTGGTAACTTAAGGATGGACGGTGCC
GGCTATGCGCCTGGGTACATTAGGGATGGAGCCGCCGGGGGGGCAGCCAC
TTTTGGAGCCAGGGGAGCGGCTACTTTTTTGCAGGATGATCGAATGCAGC
GTAGGGACCGGAAGCCACCGGTGTACGACGGCAACTTCCCGCTCTTCAAG
AGGGTGTTCGAGGCCTTCCTCAGCTGCGAAGGTCTTGTACACACACTCGC
GAAGCCGGCGAGTCCTGATCAACACATTTGGCTCATCCACACGTCAAGGA
GCTAAAACGTCCGCTTTCACGGTGAGCAGCGCGTGCGTGATCATAAGTGT
GCTGTTGAGTACCTGACGCGCGCCACGAAGGGGGCCAAACTTCAAGCTAA
AATCTTGGAAGCTGGGACAGTGTTTGGGGCGTGGGAGGCTGCCCACGAGT
TCTGCCTCCCGATGAGTGACCCCGAGAAGCAGGCCCTGAAGCTGTCTCTC
ACCAACATGAAGATGAAGCTCGGAGAGGAACCGAGGGATTACTTTCTTAG
GTTTCACAAGGTGCTGTCTACAATTCGTGCCGTCAACGGCGATGAGGTCA
CAGACCGAGAGGTCCTTGCGATGCTGCGTAGGAATCTCTTGGCCGACTAC
GACCAGCTCAAGCCGCTTCTCATGCATAATCGCGCGCTCACACGCTCGAG
TTTGGAGACTCTTGTGCGTAGCCACCACGTTGAGCAAGACCTCGGTAATG
GTGTGTAG

Coding sequence (CDS) from alignment at Scaffold_319:617108..619515+

>EsuBft1122_4a-0001 ID=EsuBft1122_4a-0001|Name=EsuBft1122_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1860bp|location=Sequence derived from alignment at Scaffold_319:617108..619515+ (Ectocarpus subulatus male Bft15b)
ATGGCTCAGCTTGGTAACGTTTTTCGCGAATATCATGATGTGTTCTCGAG
TTCTCCGACCGACTTTGGATCTTGTTCGCTTGTTCCTTATAAGCTTACAG
TTCCTCCTGGTAGTGCACCCGTCACGTCTCGCCCCTACCGCGTTAATCCC
CCGGTGGCGAAACAAGTTGACGCGATCCTTGACCAATACCTTGCGGCAGG
TTTGATTCAACGTTCGACCTCGCGTTACTCGAGGCCTTTGGTAGTCATAC
CGAAGAAATCTGGTGGTGTTCGCATCACCGTCAATTATCGCAAGCTCAAC
AAGCTTTGCGCTTTGAGTCAGCTTCCGATTTCTCAAGTCGATGATACTTT
GGACAAGTTGTTGAAAGGGCGAATTTATTCCCTTCTCGACACGAAATCTT
CGTTTCACCAAATCACGGTGCACCGCGATACAACCCCTTTGACGGCATTC
GTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAGATGCCTCAAGGCAGTTC
GACTGCCCCTGGGTGGTTTTGCAAGGTTGTCAACGAAGTCATCAGAACAG
TCCGCGGTGCTGCATCGTACTTGGATGATTTGATCGTCTTTGATGACACC
CCTGCTAATCATGTTGGTACCATGCGTGCCCTCTTTGAACGCTTGCGTAC
GCACAGCTTGAAACTCACGCCTCCGAAAGCTACTATTGGCGCTACTGAAG
CAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTCGGCCTAACGGT
GCCAAGGTTTCGGCCCTCACCAAAATGCCTATGCCCGAGGATGTCAAGCA
ACTACGTTCCCTTCTCGATGGTCTCAGCTACTACCGCAAGTTCCTCCCCA
ACATGGCTAAACGCATTCGATATCTGACTACTCTACTCAAGAAGCAGGAG
AACTTTGTCTTCACCCTTTCCATGGAGCAAGCCGTTCGCGTTTTTTTAGC
TGAGTTGGCCAATCCTCCTGTTTTAGTTTATCCAGATTGGGATGCCGTTT
CAGACGCCTCGCGACCTTTTCATCCCTACTGTGATGCTAGTCGCGATGGG
TTTGGTGAGACTCTAGAACAAGAACAGCCAGATGGTTTCGTTTGCTCAAT
TGTCTTCATCAGTCGGGCTACTTTGGACTCAGAACGTCACTGGACACCCC
GCGATCTCGAGGCGGGTAGCATCGTGTGGTCCGAAAGTGCAGCGGGGGAA
GCGGCAGCCGCGGCAGCCAAGGTAGCGGATCTGCAGAGGAGAGTTGAGGA
GACAGAGGAGAGGAGTTCAGCGGAGGACGCTACTAGAGATAGGGTGGATG
ATGCCGGATACACGGCTGGTAACTTAAGGATGGACGGTGCCGGCTATGCG
CCTGGGTACATTAGGGATGGAGCCGCCGGGGGGGCAGCCACTTTTGGAGC
CAGGGGAGCGGCTACTTTTTTGCAGGATGATCGAATGCAGCGTAGGGACC
GGAAGCCACCGGTGTACGACGGCAACTTCCCGCTCTTCAAGAGGGTGTTC
GAGGCCTTCCTCAGCTGCGAAGTGTTTGGGGCGTGGGAGGCTGCCCACGA
GTTCTGCCTCCCGATGAGTGACCCCGAGAAGCAGGCCCTGAAGCTGTCTC
TCACCAACATGAAGATGAAGCTCGGAGAGGAACCGAGGGATTACTTTCTT
AGGTTTCACAAGGTGCTGTCTACAATTCGTGCCGTCAACGGCGATGAGGT
CACAGACCGAGAGGTCCTTGCGATGCTGCGTAGGAATCTCTTGGCCGACT
ACGACCAGCTCAAGCCGCTTCTCATGCATAATCGCGCGCTCACACGCTCG
AGTTTGGAGACTCTTGTGCGTAGCCACCACGTTGAGCAAGACCTCGGTAA
TGGTGTGTAG