EsuBft1122_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1122_9a-0001
Unique NameEsuBft1122_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_319contigScaffold_319:571595..572695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1122_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length84
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_9aEsuBft1122_9aEctocarpus subulatus male Bft15bgeneScaffold_319 571595..572695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_9a-0001-exonagat-exon-1266Ectocarpus subulatus male Bft15bexonScaffold_319 571595..572098 +
EsuBft1122_9a-0001-exonEsuBft1122_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_319 572184..572278 +
EsuBft1122_9a-0001-exonagat-exon-1265Ectocarpus subulatus male Bft15bexonScaffold_319 572366..572518 +
EsuBft1122_9a-0001-exonagat-exon-1264Ectocarpus subulatus male Bft15bexonScaffold_319 572605..572695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_9a-0001-cdsEsuBft1122_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_319 571595..572098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_9a-0001EsuBft1122_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_319 571595..572695 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1122_9a-0001 ID=EsuBft1122_9a-0001|Name=EsuBft1122_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=843bp|location=Sequence derived from alignment at Scaffold_319:571595..572695+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAAACGTCCACGATGTACGCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGCAGGGGCAGTGGTACTCGTTGAAGCAGCAAGTAGGGGAGGAGC
CCCGGCGCTATCTCACAAGAGCATCAGTACTTCGCCAGAAACTAGAAGCG
TACGGTCGGGTGCAATCCGATCATGATGCTAACGTCCACTATGTACGCAA
CCTTCTGCCTGATTTCAATGTGCAGAGGAGCGTGTTGTTGGCGCATTCGG
AGGTCATGACGGAATTGGTAGGGAAGGTGATTCTGACTGCCTGGGCGGAG
ACGGAGGCCGCTAGGAACAGGGCGTGGGACAGCGTGGGGGCGTATGCCCT
CGTCACTGGCGGTGACAACCGTGGTGGCGGGGGCGGGAACATGGAGGATA
GGGGCAAGACGAGAGGACAACGGAGGACGGCAGCGCGGCAACAGCACCAA
CAACCGCAGCAGCCACAGCAGCAGCATCAGCCGTACTTCAAGCAGCAGCA
ACAGAGCGGGGTTGGGGAGGTCCCTCGGGCGGCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGC
GGGGTTGGGGAGGTCCCTCGGGCGGTCAAGGTGCGAGCTACGGCGGAAGG
CACGGGACCCAGTATGGGGGCCGGGGCTTTTCTGGAGGAGGACGTCATCT
GCAGCAGCCGGCAGGAGGAAGATTCGGGANGTACTTCAAGCAGCAGCAAC
AGCGGGGTTGGGGAGGTCCCTCGGGCGGCCAAGGTGCGAGCTACGGCGGA
AGGCACGGGCCCCAGCATGGGGGCCGGGGCTTTTCTGGAGNNN
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protein sequence of EsuBft1122_9a-0001

>EsuBft1122_9 ID=EsuBft1122_9|Name=EsuBft1122_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=281bp
MMQTSTMYAXXXXXXXXXXQGQWYSLKQQVGEEPRRYLTRASVLRQKLEA
YGRVQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVMTELVGKVILTAWAE
TEAARNRAWDSVGAYALVTGGDNRGGGGGNMEDRGKTRGQRRTAARQQHQ
QPQQPQQQHQPYFKQQQQSGVGEVPRAAXXXXXXXXXXXXXXXXXXXXXS
GVGEVPRAVKVRATAEGTGPSMGAGAFLEEDVICSSRQEEDSGXTSSSSN
SGVGEVPRAAKVRATAEGTGPSMGAGAFLEX
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mRNA from alignment at Scaffold_319:571595..572695+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1122_9a-0001 ID=EsuBft1122_9a-0001|Name=EsuBft1122_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1101bp|location=Sequence derived from alignment at Scaffold_319:571595..572695+ (Ectocarpus subulatus male Bft15b)
ATGATGCAAACGTCCACGATGTACGCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGCAGGGGCAGTGGTACTCGTTGAAGCAGCAAGTAGGGGAGGAGC
CCCGGCGCTATCTCACAAGAGCATCAGTACTTCGCCAGAAACTAGAAGCG
TACGGTCGGGTGCAATCCGATCATGATGCTAACGTCCACTATGTACGCAA
CCTTCTGCCTGATTTCAATGTGCAGAGGAGCGTGTTGTTGGCGCATTCGG
AGGTCATGACGGAATTGGTAGGGAAGGTGATTCTGACTGCCTGGGCGGAG
ACGGAGGCCGCTAGGAACAGGGCGTGGGACAGCGTGGGGGCGTATGCCCT
CGTCACTGGCGGTGACAACCGTGGTGGCGGGGGCGGGAACATGGAGGATA
GGGGCAAGACGAGAGGACAACGGAGGACGGCAGCGCGGCAACAGCACCAA
CAACCGCAGCAGCCACAGCAGCAGCATCAGCCGTACTTCAAGCAGCAGCA
ACAGGTACACCCGCCGCCGTACCCGCCTGAGATAAAATATTGTGACCTCC
ACAACTCCTTGTCCCACAGCAACGAGGAATGTCGCTTAGAGCGGGGTTGG
GGAGGTCCCTCGGGCGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTATACCTGCCGTCGT
ACCCGCCTGAAATAAAATATTGTGACCTCCACAACTCCTCGTCCCACAGC
AACGAGGAATGTCGCTTGCAGCGGGGTTGGGGAGGTCCCTCGGGCGGTCA
AGGTGCGAGCTACGGCGGAAGGCACGGGACCCAGTATGGGGGCCGGGGCT
TTTCTGGAGGAGGACGTCATCTGCAGCAGCCGGCAGGAGGAAGATTCGGG
ANGTACTTCAAGCAGCAGCAACAGGTACACCCGCCGCCGTACCCGCCTGA
GAAAAATATTGCGACCTCCACAACTCCTCGTCCCACAGCAACGAGGAATG
TCGCTTGCAGCGGGGTTGGGGAGGTCCCTCGGGCGGCCAAGGTGCGAGCT
ACGGCGGAAGGCACGGGCCCCAGCATGGGGGCCGGGGCTTTTCTGGAGNN
N
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Coding sequence (CDS) from alignment at Scaffold_319:571595..572695+

>EsuBft1122_9a-0001 ID=EsuBft1122_9a-0001|Name=EsuBft1122_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_319:571595..572695+ (Ectocarpus subulatus male Bft15b)
ATGATGCAAACGTCCACGATGTACGCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGCAGGGGCAGTGGTACTCGTTGAAGCAGCAAGTAGGGGAGGAGC
CCCGGCGCTATCTCACAAGAGCATCAGTACTTCGCCAGAAACTAGAAGCG
TACGGTCGGGTGCAATCCGATCATGATGCTAACGTCCACTATGTACGCAA
CCTTCTGCCTGATTTCAATGTGCAGAGGAGCGTGTTGTTGGCGCATTCGG
AGGTCATGACGGAATTGGTAGGGAAGGTGATTCTGACTGCCTGGGCGGAG
ACGGAGGCCGCTAGGAACAGGGCGTGGGACAGCGTGGGGGCGTATGCCCT
CGTCACTGGCGGTGACAACCGTGGTGGCGGGGGCGGGAACATGGAGGATA
GGGGCAAGACGAGAGGACAACGGAGGACGGCAGCGCGGCAACAGCACCAA
CAACCGCAGCAGCCACAGCAGCAGCATCAGCCGTACTTCAAGCAGCAGCA
ACAGAGCGGGGTTGGGGAGGTCCCTCGGGCGGCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGC
GGGGTTGGGGAGGTCCCTCGGGCGGTCAAGGTGCGAGCTACGGCGGAAGG
CACGGGACCCAGTATGGGGGCCGGGGCTTTTCTGGAGGAGGACGTCATCT
GCAGCAGCCGGCAGGAGGAAGATTCGGGANGTACTTCAAGCAGCAGCAAC
AGCGGGGTTGGGGAGGTCCCTCGGGCGGCCAAGGTGCGAGCTACGGCGGA
AGGCACGGGCCCCAGCATGGGGGCCGGGGCTTTTCTGGAGNNN
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