EsuBft613_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft613_4a-0001
Unique Name	EsuBft613_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_119	contig	Scaffold_119:142330..143878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_012129-tr
ProteomeId	EsuBft613_4
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	154
Hectar predicted targeting category	other localisation
Evalue	4.08e-07
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3AJJK@33154\|Opisthokonta,3BZRE@33208\|Metazoa,3DG9F@33213\|Bilateria
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Endonuclease-reverse transcriptase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft613_4a	EsuBft613_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_119 142330..143878 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_4a-0001-exon	EsuBft613_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_119 142330..143878 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_4a-0001-cds	EsuBft613_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_119 142330..143463 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_4a-0001-exon	agat-three_prime_utr-19201	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_119 143464..143878 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_4a-0001	EsuBft613_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_119 142330..143463 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_119:142330..143878+
coding sequence from alignment at Scaffold_119:142330..143878+

spliced messenger RNA

>EsuBft613_4a-0001 ID=EsuBft613_4a-0001|Name=EsuBft613_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1549bp|location=Sequence derived from alignment at Scaffold_119:142330..143878+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTCATCCCTGAACTTATTGTGGTGAAAATGACCTCCCGGGAAAA
AAGAAGCCTGTACCGCGGGATTTCGGAGATGATAATTTGGGTGGTCGGGG
GACGTCTGGGTGTTGGGGACGTGGTAAGCAAACTAGGGAAATACCAGTGG
GTAGGGAAGGCAAGAAAGGGCTTAGACCCGAAGGAAGGGGGGGAGGGGGG
AGGATTCCTGGTCAAGGAACACTTGCTTGGCGTGGTGGAAGTAGTGGTGA
AAACGGAGTTCGAGGAAAGCCTATGGCTTAAGATACCTGGGGGGCGGGGT
GAGAAAGATTGGTTTGTAGGGAACGTATACGTCCCACCGTCGTCGAAGAA
AGTCGCAAGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGTCC
AGAGGTTCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACTCC
AGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGAGA
AGACAAAGTGAATGACAACGGAGTGAGGATGCTTGAATTCTTGGGAAGCA
ACGAGCTGATGGAATTGAAGGGTAGGAGGGAATGCGATAAGCCGGAGTTT
ACCGGGCAACGGGCAGTTTGCAATGAATATTCAATCCTCGACTACATCCT
GCTAGATAGGGGGAGCGCACAGATCCCAGAGCTGCACGTGAGTGTGATTG
ATATAGGTTCGACCGACCACTTCCTCATATGGGCAAACATCGACCGATCT
AGAAAGATGGACAGTAAGAAACAGAGGAAAGTGTTCCAGTGGAAAATAGA
GCGTTTGGGAGACGAGGGGACGCGGGATGACTTCCAGAAGGGACTGGCTG
GTAGTGTAGAACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAG
GTAGACGTACAAGCAGCAGGGGACAGGGTGAATAAAGGGTGGGAGTCCAT
ATTGAACACAACGGCTGAGACAGTAATGGGAAAGCAGGTGGTACGATGTG
GGGTATCGGTTAAGTGGTGGGATGAGGAGCTGAAAGAAGAAATAGGGGAA
CGTCGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTG
GGAAAAGTACAGGGCCAAGAGAAAAAACAGGTGAAGGGACTAGTGAAAAA
GAAGAAAAGGTGTTTTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCC
TGGAGGGGAACGTCAAGCAGATGTGGCAAGGGATTAGTGGAGTGGTAAAA
AAGACCGCGCAAGGGGGGGACAAAGGGGTAGCAACTTCGCGAGGTGTGAA
CGGTGGACTAGTCGGCAGTGCGAATGGAAAAAAGGAAGTTCTAGCAGGAC
ACTACAAAAGCTTGGAGTGCCCTCGGAGAATGAAGCTCTTGAAAAAGTGT
TTTAAGAAAGAGGTGGACGCACGGGCCCAGAAAGCAGAAGAGACATTGAA
GGCAGACGTTGGGAACGTTTAGAACTAGAAAAGGAGTTCACTGAGGACGA
GGTTGAGGCGTGTGTGACCAAGCTGAAGTGCCACAAAGCAGCAGGAGCG

protein sequence of EsuBft613_4a-0001

>EsuBft613_4 ID=EsuBft613_4|Name=EsuBft613_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=377bp
MQVIPELIVVKMTSREKRSLYRGISEMIIWVVGGRLGVGDVVSKLGKYQW
VGKARKGLDPKEGGEGGGFLVKEHLLGVVEVVVKTEFEESLWLKIPGGRG
EKDWFVGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNS
RVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMELKGRRECDKPEF
TGQRAVCNEYSILDYILLDRGSAQIPELHVSVIDIGSTDHFLIWANIDRS
RKMDSKKQRKVFQWKIERLGDEGTRDDFQKGLAGSVEPFRKLLRSVEDGQ
VDVQAAGDRVNKGWESILNTTAETVMGKQVVRCGVSVKWWDEELKEEIGE
RREVFKQYLSEASEESWEKYRAKRKNR

mRNA from alignment at Scaffold_119:142330..143878+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft613_4a-0001 ID=EsuBft613_4a-0001|Name=EsuBft613_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1549bp|location=Sequence derived from alignment at Scaffold_119:142330..143878+ (Ectocarpus subulatus male Bft15b)
ATGCAAGTCATCCCTGAACTTATTGTGGTGAAAATGACCTCCCGGGAAAA
AAGAAGCCTGTACCGCGGGATTTCGGAGATGATAATTTGGGTGGTCGGGG
GACGTCTGGGTGTTGGGGACGTGGTAAGCAAACTAGGGAAATACCAGTGG
GTAGGGAAGGCAAGAAAGGGCTTAGACCCGAAGGAAGGGGGGGAGGGGGG
AGGATTCCTGGTCAAGGAACACTTGCTTGGCGTGGTGGAAGTAGTGGTGA
AAACGGAGTTCGAGGAAAGCCTATGGCTTAAGATACCTGGGGGGCGGGGT
GAGAAAGATTGGTTTGTAGGGAACGTATACGTCCCACCGTCGTCGAAGAA
AGTCGCAAGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGTCC
AGAGGTTCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACTCC
AGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGAGA
AGACAAAGTGAATGACAACGGAGTGAGGATGCTTGAATTCTTGGGAAGCA
ACGAGCTGATGGAATTGAAGGGTAGGAGGGAATGCGATAAGCCGGAGTTT
ACCGGGCAACGGGCAGTTTGCAATGAATATTCAATCCTCGACTACATCCT
GCTAGATAGGGGGAGCGCACAGATCCCAGAGCTGCACGTGAGTGTGATTG
ATATAGGTTCGACCGACCACTTCCTCATATGGGCAAACATCGACCGATCT
AGAAAGATGGACAGTAAGAAACAGAGGAAAGTGTTCCAGTGGAAAATAGA
GCGTTTGGGAGACGAGGGGACGCGGGATGACTTCCAGAAGGGACTGGCTG
GTAGTGTAGAACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAG
GTAGACGTACAAGCAGCAGGGGACAGGGTGAATAAAGGGTGGGAGTCCAT
ATTGAACACAACGGCTGAGACAGTAATGGGAAAGCAGGTGGTACGATGTG
GGGTATCGGTTAAGTGGTGGGATGAGGAGCTGAAAGAAGAAATAGGGGAA
CGTCGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTG
GGAAAAGTACAGGGCCAAGAGAAAAAACAGGTGAAGGGACTAGTGAAAAA
GAAGAAAAGGTGTTTTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCC
TGGAGGGGAACGTCAAGCAGATGTGGCAAGGGATTAGTGGAGTGGTAAAA
AAGACCGCGCAAGGGGGGGACAAAGGGGTAGCAACTTCGCGAGGTGTGAA
CGGTGGACTAGTCGGCAGTGCGAATGGAAAAAAGGAAGTTCTAGCAGGAC
ACTACAAAAGCTTGGAGTGCCCTCGGAGAATGAAGCTCTTGAAAAAGTGT
TTTAAGAAAGAGGTGGACGCACGGGCCCAGAAAGCAGAAGAGACATTGAA
GGCAGACGTTGGGAACGTTTAGAACTAGAAAAGGAGTTCACTGAGGACGA
GGTTGAGGCGTGTGTGACCAAGCTGAAGTGCCACAAAGCAGCAGGAGCG

Coding sequence (CDS) from alignment at Scaffold_119:142330..143878+

>EsuBft613_4a-0001 ID=EsuBft613_4a-0001|Name=EsuBft613_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1134bp|location=Sequence derived from alignment at Scaffold_119:142330..143878+ (Ectocarpus subulatus male Bft15b)
ATGCAAGTCATCCCTGAACTTATTGTGGTGAAAATGACCTCCCGGGAAAA
AAGAAGCCTGTACCGCGGGATTTCGGAGATGATAATTTGGGTGGTCGGGG
GACGTCTGGGTGTTGGGGACGTGGTAAGCAAACTAGGGAAATACCAGTGG
GTAGGGAAGGCAAGAAAGGGCTTAGACCCGAAGGAAGGGGGGGAGGGGGG
AGGATTCCTGGTCAAGGAACACTTGCTTGGCGTGGTGGAAGTAGTGGTGA
AAACGGAGTTCGAGGAAAGCCTATGGCTTAAGATACCTGGGGGGCGGGGT
GAGAAAGATTGGTTTGTAGGGAACGTATACGTCCCACCGTCGTCGAAGAA
AGTCGCAAGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGTCC
AGAGGTTCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACTCC
AGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGAGA
AGACAAAGTGAATGACAACGGAGTGAGGATGCTTGAATTCTTGGGAAGCA
ACGAGCTGATGGAATTGAAGGGTAGGAGGGAATGCGATAAGCCGGAGTTT
ACCGGGCAACGGGCAGTTTGCAATGAATATTCAATCCTCGACTACATCCT
GCTAGATAGGGGGAGCGCACAGATCCCAGAGCTGCACGTGAGTGTGATTG
ATATAGGTTCGACCGACCACTTCCTCATATGGGCAAACATCGACCGATCT
AGAAAGATGGACAGTAAGAAACAGAGGAAAGTGTTCCAGTGGAAAATAGA
GCGTTTGGGAGACGAGGGGACGCGGGATGACTTCCAGAAGGGACTGGCTG
GTAGTGTAGAACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAG
GTAGACGTACAAGCAGCAGGGGACAGGGTGAATAAAGGGTGGGAGTCCAT
ATTGAACACAACGGCTGAGACAGTAATGGGAAAGCAGGTGGTACGATGTG
GGGTATCGGTTAAGTGGTGGGATGAGGAGCTGAAAGAAGAAATAGGGGAA
CGTCGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTG
GGAAAAGTACAGGGCCAAGAGAAAAAACAGGTGA