EsuBft99_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_9a-0001
Unique NameEsuBft99_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:132289..136348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVA9
ProteomeIdEsuBft99_9
Protein domainsPTHR11845
Protein domainsIPR003607
Protein domainsIPR006674
Protein domainsSSF109604
Ownerapollo_admin@sb-roscoff.fr
Notehd domain-containing protein 2 os:danio rerio gn:hddc2 pe:2 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length996
Hectar predicted targeting categoryother localisation
Evalue9.29e-157
EggNOG OGsCOG1896@1|root,KOG3197@2759|Eukaryota
Ec32 ortholog descriptionHD domain
Ec32 orthologEc-14_000400.1
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameHDDC2
KEGG rclassRC00002
KEGG koko:K07023,ko:K07198,ko:K13800,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map00240,map00983,map01100,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
KEGG ModuleM00052
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019199,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030431,GO:0032501,GO:0036211,GO:0038023,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EC2.7.11.11,2.7.4.14
DescriptionHD domain
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005515
GO0005739
GO0070062
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_9aEsuBft99_9aEctocarpus subulatus male Bft15bgeneScaffold_501 132289..136348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_9a-0001EsuBft99_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 132372..136140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_9a-0001-exonagat-exon-40591Ectocarpus subulatus male Bft15bexonScaffold_501 132289..132390 +
EsuBft99_9a-0001-exonagat-exon-40596Ectocarpus subulatus male Bft15bexonScaffold_501 133019..133130 +
EsuBft99_9a-0001-exonagat-exon-40594Ectocarpus subulatus male Bft15bexonScaffold_501 133626..133694 +
EsuBft99_9a-0001-exonagat-exon-40595Ectocarpus subulatus male Bft15bexonScaffold_501 134097..134251 +
EsuBft99_9a-0001-exonagat-exon-40593Ectocarpus subulatus male Bft15bexonScaffold_501 134575..134691 +
EsuBft99_9a-0001-exonagat-exon-40592Ectocarpus subulatus male Bft15bexonScaffold_501 135461..135522 +
EsuBft99_9a-0001-exonEsuBft99_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 135970..136348 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_9a-0001-exonagat-five_prime_utr-15616Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_501 132289..132371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_9a-0001-cdsEsuBft99_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 132372..132390 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_9a-0001-exonagat-three_prime_utr-23948Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 136141..136348 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_9a-0001 ID=EsuBft99_9a-0001|Name=EsuBft99_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=996bp|location=Sequence derived from alignment at Scaffold_501:132289..136348+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCACCTCCGCCTATGCTTGGTAGCAACAGGCTTGGTGCCTTTTCATCAT
CGTCGAACCCCATTCAACACCGCCAGACCTATCATGTCTGCAGGTGGACA
CGGCACAAACATGAACGTGCTTCCAGCCAGCGCGTTGTCGTTCATGAGAG
TGGTGGGCAAGCTGAAGGAGCTCAAGAGGACCGGCTGGGTTCATCGAGGA
GTCTCTAAACCAGAGTCGGTGTCCGATCACATGTATCGCATGGCAATGTG
CTCCTTCCTCATTACGGACCCGACATTAGATCAATCGCGCGTTATGAAAC
TGGCGATGGTACACGATCTTGCCGAAGCCCTGGCGGGAGACATCGCGCCC
TTCCAGAACGTCTCAAAGGAGGACAAGCGTCGCCTGGAGGAGGAAGGGCT
AGACAAGATATGCGCAACCATTGGCAGCGATCCCATCGCTCTAGAGATAA
AAAAGCTGTGGTATGAGTACGAAGACTGCACGTCCGAGGAGGCGAGGGTG
GTCAAGGACTTGGACAAGCTAGAGATGATTGTCCAGGCAGACGACTACGA
GAAAGGTCAAGGACTCGACCTGGGCGAGTTTTTCGAGAGCACCGAAGGGT
GCTTCACCACCCCCCAGGTACAGTCGTGGGACAAGGAGCTGAGGGAGCAA
AGGGCTGCCCGTCGACAAGAAGCGAAACCATCCAATCAGCCACCAGCAAC
GACGTCAGATTCGTGCACGGAAACCTCGGTCGAGAAGGGGGCAGAAAGAG
GGGATGCCGGCACTTGCGACCTTCGCCCAGACCCTTGATTAGTGCACGGG
TAGGCATATGGGTAGAGCGATGCGATATTAATCCCTGGGCGTCCCGCAAA
CGCGACACGGGGGATAGGGGGTGTTTTTCGGTTGTATTTGGACGTGAGCG
AAAGAGCGAGTTCTTCTCGGAAGGCAGTCCAGTAGCACCAAGCGTGTTCA
AGCCACAATGCCCTCCCGACAACTACAACACGGCTGAGTCCACAAA
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protein sequence of EsuBft99_9a-0001

>EsuBft99_9 ID=EsuBft99_9|Name=EsuBft99_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=234bp
MSAGGHGTNMNVLPASALSFMRVVGKLKELKRTGWVHRGVSKPESVSDHM
YRMAMCSFLITDPTLDQSRVMKLAMVHDLAEALAGDIAPFQNVSKEDKRR
LEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIV
QADDYEKGQGLDLGEFFESTEGCFTTPQVQSWDKELREQRAARRQEAKPS
NQPPATTSDSCTETSVEKGAERGDAGTCDLRPDP
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mRNA from alignment at Scaffold_501:132289..136348+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_9a-0001 ID=EsuBft99_9a-0001|Name=EsuBft99_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4060bp|location=Sequence derived from alignment at Scaffold_501:132289..136348+ (Ectocarpus subulatus male Bft15b)
TGCACCTCCGCCTATGCTTGGTAGCAACAGGCTTGGTGCCTTTTCATCAT
CGTCGAACCCCATTCAACACCGCCAGACCTATCATGTCTGCAGGTGGACA
CGGTGAGAAGGCACACATGTTTGTCGAAAAAATTGAAATTCACGCCTGCT
GAATTCCTTGCGATGCAGTCCCCAGGATGGTGCATATGTATTGCAAGGAG
GGTGCCACGCCCACATCAGCAACGCCGGGAATCTATGTGATGGGATATTA
ATATTCGATCTTTGATGGTAAGTAGGCGTAAATGAGCACCTTTCGCGCTA
TTGAGATACGGCGGGGTCCATTGTATCGGAAAGGGGGGTGGTATATTACA
TCACACGCCTTCGCTCATCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCNATGCATAGCAAGGACTACGGTCTTCGTTTGT
GTACCGTATGCATTATGCTTCCAACAGCGTGTGTGTGCAACAAAACAATC
GGTCCAATTGCTGTCCTCTTTGTTTATTTCAACAAAATGGCGTGGGTTGC
TCACGTCAAAAAGACGTCGTGTGCAAGTACATGAAGCGTTCGTCGTATCG
CTTGCCAGCCCCCGCCGTTAACAAGTTAATTGTGCAAGATCACAAGCACT
TTGCTTCCTTTGTCTGTTTTTTGTTCCAAGGCACAAACATGAACGTGCTT
CCAGCCAGCGCGTTGTCGTTCATGAGAGTGGTGGGCAAGCTGAAGGAGCT
CAAGAGGACCGGCTGGGTTCATCGAGGAGTCTCTAAACCAGAGTGAGCCC
GACATAGACTGTTGTAATGCACTGCTGCATCGGTAGTGGCGGCGTTTAAT
CCATACGGCTGGCAGAGCCATGCGTCGTACCTACGGGTACGAACGGCTTC
AAATGCGAAAAGTGCAAGTGCGTTACACAGATATGCACAAATATAGGGAG
CGGTGTAGCGCAAATACGGCGCAGGTATGCAAGGCGCATAGTGTCATCAC
GGCGTCTCCACCGTAGTTCGTGCACGATACCTACTAGTGCAACAGGTCCC
CAATACTGAAACGCATAGTTGTCGGTCAGTAGGCTTCACAGGTGTGCTGA
GCTCTTCGTTTGGTACGTATGCATCCAGCATACCAGCCTACGCATCCACG
ACTCTTTAGCATGAATAAAGTTGAGGAACATTTGCACGCTGGGGAATATT
GCTACTGGAGAAAGATGTAGCGACCATGTCATCCACTGCTTCAACCGATC
TCTTCCGCCGCCCGTAAACCATTCGACCGCAAATCAGGTCGGTGTCCGAT
CACATGTATCGCATGGCAATGTGCTCCTTCCTCATTACGGACCCGACATT
AGATCAGTAAGTCCTGCTTCGTGTCTGGTCCCTTGGTACCCAACACAGCA
GTTTTGTATTCTGCACAGCAGTCGGTACTTCGTCTCTTCTAGCATTCAGC
CGTCATTCTTGCAGACCATGGTAGTACTCTCGGTAGCGAGGTATCTACAG
CGGCGCCATCCTCTGCATAAATTGGTTGGCCTAGGGGCGAGCGCGACACG
TTTGCCACGTTGATACACGTATGCACAAGAAGGCTAGAGAGGTCGCCAGA
ACCGGTTCTACTTGGCGTTGCCAGCATCTTAACAGGGAGTGCCCGTATGA
ACCCGGGCGTCCGGCTCTGCATCATTGTTCTCGAGACCAGCAGATGGTCG
TCTGTCTCATCATCGTCCTTCTCCGTCTTGTTTTTCGTGGGGTAACTTCA
ACCAATAGATCGCGCGTTATGAAACTGGCGATGGTACACGATCTTGCCGA
AGCCCTGGCGGGAGACATCGCGCCCTTCCAGAACGTCTCAAAGGAGGACA
AGCGTCGCCTGGAGGAGGAAGGGCTAGACAAGATATGCGCAACCATTGGC
AGCGATCCCATCGGTGTGCGGCTGGTTAAGGGCTTATGGCGTGTCGCGTG
ATCTAGAACAGTGTGTATGATGTTGTGCCGACTGTCGAGAGCCAAGTGTG
GAACATGTGGCTAACCGTAGGGTGAGGCTTCTTTGGGGGTATTAAGCTAG
ATCGGTGGAAACGGGCATGTCTTTTTTCGCATTGTACTGAGGAGCTTGTA
TTTCAGGATATGAAGGGCAACACCGACCCGGGTCATCACGTGCTACTGCT
GCTGAGCGAAGCCTAAGGCCACGTCGGGGGCAACCTCCGCTGACTTTTGA
TGTTTGGTGTCGTCTGTTGCTTTCTCGTGCCCACAGCTCTAGAGATAAAA
AAGCTGTGGTATGAGTACGAAGACTGCACGTCCGAGGAGGCGAGGGTGGT
CAAGGACTTGGACAAGCTAGAGATGATTGTCCAGGCAGACGACTACGAGA
AAGGTGAGTCGCCGTGTTGCCGTTCTCGCCGCTCGATAAGCAGCGACCAA
AATTTGCCTTGTATTCTTTTTTGTGTCGCCTCGGTTCGACTCAGACTCCT
CGGTCCTCGTTGAGGTCAGCAGTCTTAAAATTATGTATGTTGTTTTACCG
TGATCGCCTTCGGTGACGTTCGACGGTACGGTACCTCTGCCCCCTACACG
CCGTTTGTAGTTGCACGCCCGTGGCTTTGAAGGAACCCTCAAAGTCTTGT
GGGAAGCCGCTGAAGTCGCATCGACCTGTAGAGAATCCCTGAGACTACCA
GTATATACTGGCGCCTGTGGCTTTCGCGCCTTTAAACATTTTAGTTGCTG
TCGGTACCGCCTAAGCATGCGGATGCAACGGCGTGGAACTTCCTGGCACT
ACCGTCGCGGTGTTGGCGAGGAGAGGAGGGTGCTTCTCTCCGTAAGGACA
CATGTTTTGTTGTCGCGGAGGGTGTTGACACACAAAATGCAATTGCTTCA
ACATTAGGGTAAAGTATTGTGGGCAGGCCTTCCGTATTTCACTCGAATAT
TTGCAAGCACGGTTGTGCTACTTACAGTCTAGTTCTGCGCACCCCTCGAA
CTATACACCGGAGTGAGTGTACGAAAAGACGAAGATTCTGTCATACCATC
CTTGACGAAAAATGGCATGGTCCTATTATTGCTCACACACGCGCCGTCCC
TATCTCGGCAGTCTTCCAACAACAAGACGAACGTCATGCCTCTCTACTGC
TGCATCGTCGCCAATGGTGCAGGTCAAGGACTCGACCTGGGCGAGTTTTT
CGAGAGCACCGAAGGGTGCTTCACCACCCCCCAGGTGAACACACACGCGA
ATCCTCTCCTCACCGCTTCTCTCCGAGACACTTGGTCGCTGCGTTGTTTG
TCGGCGTGATGCTTCAGACGAGCACGTTTTCCAGCAGGGGCATAGTTGCA
CACGATACGCGTAATACTTGAGTCGTTCAACGAAGGCGTCCTTAATCCAG
CAAGTGGTCGCATTTGGCAGAGGTGCTGCATGTGAGTGTTTGTCATGAGG
ATGCTCGACTCGGTTCGATGAGACCGAAGCGTGGCGTTCGATTCACCTGC
TTGGCTTTTCCGAACCTCCTCAACCTTGTCGTTGCTCAGTGCATGGTTCT
ACACGGAAGGCTAGCCATCTGCACGCACAGACGTTCGAGCTCTGTTGTTC
CTTGGTGTGTGAGAGTTGCCTGCTCATCGACTTTATGGTACGTATGCTTC
GTGCTGGTATGCGATTCCTCTTGGCAAGCAGGTACAGTCGTGGGACAAGG
AGCTGAGGGAGCAAAGGGCTGCCCGTCGACAAGAAGCGAAACCATCCAAT
CAGCCACCAGCAACGACGTCAGATTCGTGCACGGAAACCTCGGTCGAGAA
GGGGGCAGAAAGAGGGGATGCCGGCACTTGCGACCTTCGCCCAGACCCTT
GATTAGTGCACGGGTAGGCATATGGGTAGAGCGATGCGATATTAATCCCT
GGGCGTCCCGCAAACGCGACACGGGGGATAGGGGGTGTTTTTCGGTTGTA
TTTGGACGTGAGCGAAAGAGCGAGTTCTTCTCGGAAGGCAGTCCAGTAGC
ACCAAGCGTGTTCAAGCCACAATGCCCTCCCGACAACTACAACACGGCTG
AGTCCACAAA
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Coding sequence (CDS) from alignment at Scaffold_501:132289..136348+

>EsuBft99_9a-0001 ID=EsuBft99_9a-0001|Name=EsuBft99_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=705bp|location=Sequence derived from alignment at Scaffold_501:132289..136348+ (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGGTGGACACGGCACAAACATGAACGTGCTTCCAGCCAGCGC
GTTGTCGTTCATGAGAGTGGTGGGCAAGCTGAAGGAGCTCAAGAGGACCG
GCTGGGTTCATCGAGGAGTCTCTAAACCAGAGTCGGTGTCCGATCACATG
TATCGCATGGCAATGTGCTCCTTCCTCATTACGGACCCGACATTAGATCA
ATCGCGCGTTATGAAACTGGCGATGGTACACGATCTTGCCGAAGCCCTGG
CGGGAGACATCGCGCCCTTCCAGAACGTCTCAAAGGAGGACAAGCGTCGC
CTGGAGGAGGAAGGGCTAGACAAGATATGCGCAACCATTGGCAGCGATCC
CATCGCTCTAGAGATAAAAAAGCTGTGGTATGAGTACGAAGACTGCACGT
CCGAGGAGGCGAGGGTGGTCAAGGACTTGGACAAGCTAGAGATGATTGTC
CAGGCAGACGACTACGAGAAAGGTCAAGGACTCGACCTGGGCGAGTTTTT
CGAGAGCACCGAAGGGTGCTTCACCACCCCCCAGGTACAGTCGTGGGACA
AGGAGCTGAGGGAGCAAAGGGCTGCCCGTCGACAAGAAGCGAAACCATCC
AATCAGCCACCAGCAACGACGTCAGATTCGTGCACGGAAACCTCGGTCGA
GAAGGGGGCAGAAAGAGGGGATGCCGGCACTTGCGACCTTCGCCCAGACC
CTTGA
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