EsuBft99_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_7a-0001
Unique NameEsuBft99_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:112774..113193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQN9
ProteomeIdEsuBft99_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length42
Hectar predicted targeting categoryother localisation
Evalue2.23e-45
EggNOG OGs2E3IK@1|root,2SAKM@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_7aEsuBft99_7aEctocarpus subulatus male Bft15bgeneScaffold_501 112774..113193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_7a-0001-exonEsuBft99_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 112774..113193 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_7a-0001-exonagat-three_prime_utr-23946Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 112774..112941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_7a-0001-cdsEsuBft99_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 112942..113193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_7a-0001EsuBft99_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 112942..113193 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_7a-0001 ID=EsuBft99_7a-0001|Name=EsuBft99_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=420bp|location=Sequence derived from alignment at Scaffold_501:112774..113193- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCCTGGAGGGGTCACCTATAGGCGCCAGGCCGTCTTCGGGACGGG
ATTTAGGATTCGTATCTCCTTCCCTTCCTCGCCTGGGCGGGAACATAGGT
GGTTCAACCCGCACCCCCTCGGAGGAGATCCCAACCTGTACAATTTTCAA
ACTTGGGCAAGGACGGTGCTGCAGAGAGGCATGATCCACCCGCGTGACGC
CGAGGCTTGGCGCACAGCGCTTGTAGATGTAGAGGGTGGTGGCGTTGGAT
AGCTGGTTGTGTCAGCGGCCGACGATACCTGGCGAGTAATCCTCTGCTAG
GCGTTGTTGATGAATTGATTTGGCAACGTAGAAGAGACACGATAAGCGCC
CACAAAATCGCCCCAACCATCGCCAACCTTACCCTGGGTTCCTTAGATGA
GGATGCGTCGATGTGCGTTC
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protein sequence of EsuBft99_7a-0001

>EsuBft99_7 ID=EsuBft99_7|Name=EsuBft99_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MGPGGVTYRRQAVFGTGFRIRISFPSSPGREHRWFNPHPLGGDPNLYNFQ
TWARTVLQRGMIHPRDAEAWRTALVDVEGGGVG
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mRNA from alignment at Scaffold_501:112774..113193-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_7a-0001 ID=EsuBft99_7a-0001|Name=EsuBft99_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=420bp|location=Sequence derived from alignment at Scaffold_501:112774..113193- (Ectocarpus subulatus male Bft15b)
ATGGGGCCTGGAGGGGTCACCTATAGGCGCCAGGCCGTCTTCGGGACGGG
ATTTAGGATTCGTATCTCCTTCCCTTCCTCGCCTGGGCGGGAACATAGGT
GGTTCAACCCGCACCCCCTCGGAGGAGATCCCAACCTGTACAATTTTCAA
ACTTGGGCAAGGACGGTGCTGCAGAGAGGCATGATCCACCCGCGTGACGC
CGAGGCTTGGCGCACAGCGCTTGTAGATGTAGAGGGTGGTGGCGTTGGAT
AGCTGGTTGTGTCAGCGGCCGACGATACCTGGCGAGTAATCCTCTGCTAG
GCGTTGTTGATGAATTGATTTGGCAACGTAGAAGAGACACGATAAGCGCC
CACAAAATCGCCCCAACCATCGCCAACCTTACCCTGGGTTCCTTAGATGA
GGATGCGTCGATGTGCGTTC
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Coding sequence (CDS) from alignment at Scaffold_501:112774..113193-

>EsuBft99_7a-0001 ID=EsuBft99_7a-0001|Name=EsuBft99_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=252bp|location=Sequence derived from alignment at Scaffold_501:112774..113193- (Ectocarpus subulatus male Bft15b)
ATGGGGCCTGGAGGGGTCACCTATAGGCGCCAGGCCGTCTTCGGGACGGG
ATTTAGGATTCGTATCTCCTTCCCTTCCTCGCCTGGGCGGGAACATAGGT
GGTTCAACCCGCACCCCCTCGGAGGAGATCCCAACCTGTACAATTTTCAA
ACTTGGGCAAGGACGGTGCTGCAGAGAGGCATGATCCACCCGCGTGACGC
CGAGGCTTGGCGCACAGCGCTTGTAGATGTAGAGGGTGGTGGCGTTGGAT
AG
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