EsuBft99_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_4a-0001
Unique NameEsuBft99_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:52131..52505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVB6
ProteomeIdEsuBft99_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length37
Hectar predicted targeting categoryother localisation
Evalue1.02e-25
EggNOG OGsCOG0537@1|root,KOG4359@2759|Eukaryota
Ec32 ortholog descriptionHistidine triad (HIT) protein
Ec32 orthologEc-14_000500.1
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameHINT3
Descriptionnucleoside phosphate binding
COG categoryFG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_4aEsuBft99_4aEctocarpus subulatus male Bft15bgeneScaffold_501 52131..52505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_4a-0001-exonEsuBft99_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 52131..52505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_4a-0001-cdsEsuBft99_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 52131..52448 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_4a-0001-exonagat-five_prime_utr-15613Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_501 52449..52505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_4a-0001EsuBft99_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 52131..52448 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_4a-0001 ID=EsuBft99_4a-0001|Name=EsuBft99_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=375bp|location=Sequence derived from alignment at Scaffold_501:52131..52505- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGTCAGTCGTAGTTTTACAGGGTACTTTCACACCATACTTTGCACTAC
ACGACCCATGGAAGATCGCAGTGTAGTGTCAAGTGCGGTTGTGGGTGCAT
CGATTGAACCAGTTTGCAGGCATGTCTCGGGGCAAAATGTATGCATACGC
CTGCCCCAAGTCGCTCAGTGGTTGCGGCTTGTGAAGTTTAACGCAGTCTC
GGTAACCATGCCCTCGGCATCGACCATCACTGAACGGCAGACTGCCCAGG
CATCTCTAGGGTTCCACATGGCGCCATGGACACTGGTGCCGCACCTACAC
ATGCACGCTATCGCGCCCCTGAGAAGTCTCAACATCTGGCAACGATTTCA
TTTCCTCGTCGGTTCCTTCTGGTGA
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protein sequence of EsuBft99_4a-0001

>EsuBft99_4 ID=EsuBft99_4|Name=EsuBft99_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MEDRSVVSSAVVGASIEPVCRHVSGQNVCIRLPQVAQWLRLVKFNAVSVT
MPSASTITERQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFL
VGSFW
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mRNA from alignment at Scaffold_501:52131..52505-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_4a-0001 ID=EsuBft99_4a-0001|Name=EsuBft99_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=375bp|location=Sequence derived from alignment at Scaffold_501:52131..52505- (Ectocarpus subulatus male Bft15b)
GCCGTCAGTCGTAGTTTTACAGGGTACTTTCACACCATACTTTGCACTAC
ACGACCCATGGAAGATCGCAGTGTAGTGTCAAGTGCGGTTGTGGGTGCAT
CGATTGAACCAGTTTGCAGGCATGTCTCGGGGCAAAATGTATGCATACGC
CTGCCCCAAGTCGCTCAGTGGTTGCGGCTTGTGAAGTTTAACGCAGTCTC
GGTAACCATGCCCTCGGCATCGACCATCACTGAACGGCAGACTGCCCAGG
CATCTCTAGGGTTCCACATGGCGCCATGGACACTGGTGCCGCACCTACAC
ATGCACGCTATCGCGCCCCTGAGAAGTCTCAACATCTGGCAACGATTTCA
TTTCCTCGTCGGTTCCTTCTGGTGA
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Coding sequence (CDS) from alignment at Scaffold_501:52131..52505-

>EsuBft99_4a-0001 ID=EsuBft99_4a-0001|Name=EsuBft99_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_501:52131..52505- (Ectocarpus subulatus male Bft15b)
ATGGAAGATCGCAGTGTAGTGTCAAGTGCGGTTGTGGGTGCATCGATTGA
ACCAGTTTGCAGGCATGTCTCGGGGCAAAATGTATGCATACGCCTGCCCC
AAGTCGCTCAGTGGTTGCGGCTTGTGAAGTTTAACGCAGTCTCGGTAACC
ATGCCCTCGGCATCGACCATCACTGAACGGCAGACTGCCCAGGCATCTCT
AGGGTTCCACATGGCGCCATGGACACTGGTGCCGCACCTACACATGCACG
CTATCGCGCCCCTGAGAAGTCTCAACATCTGGCAACGATTTCATTTCCTC
GTCGGTTCCTTCTGGTGA
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