EsuBft99_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_3a-0001
Unique NameEsuBft99_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:41833..45440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVB8
ProteomeIdEsuBft99_3
Protein domainsPTHR13748
Protein domainsIPR003495
Protein domainsIPR027417
Protein domainsIPR011629
Ownerapollo_admin@sb-roscoff.fr
Notecobw domain-containing protein 1 os:mus musculus gn:cbwd1 pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length2070
Hectar predicted targeting categoryother localisation
Evalue2.11e-315
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
Ec32 ortholog descriptionCobW/HypB/UreG domain
Ec32 orthologEc-14_000520.1
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameCBWD1
KEGG koko:K12605
KEGG Pathwayko03018,map03018
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
DescriptionATP binding
COG categoryF
BRITEko00000,ko00001,ko03019
Cross References
External references for this mRNA
DatabaseAccession
GO0005737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_3aEsuBft99_3aEctocarpus subulatus male Bft15bgeneScaffold_501 41833..45440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_3a-0001EsuBft99_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 42417..45385 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_3a-0001-exonagat-exon-40563Ectocarpus subulatus male Bft15bexonScaffold_501 41833..43148 -
EsuBft99_3a-0001-exonEsuBft99_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 43408..43632 -
EsuBft99_3a-0001-exonagat-exon-40565Ectocarpus subulatus male Bft15bexonScaffold_501 43950..44114 -
EsuBft99_3a-0001-exonagat-exon-40564Ectocarpus subulatus male Bft15bexonScaffold_501 45077..45440 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_3a-0001-exonagat-three_prime_utr-23943Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 41833..42416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_3a-0001-cdsEsuBft99_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 42417..43148 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_3a-0001-exonagat-five_prime_utr-15612Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_501 45386..45440 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_3a-0001 ID=EsuBft99_3a-0001|Name=EsuBft99_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2070bp|location=Sequence derived from alignment at Scaffold_501:41833..45440- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCACACACCAACACACCTGCAGCAGCAGGCAGAGACAGAGAAACAGAGAA
AGCAAATGGAAAGTGACGACGACTACCCTCCTGACCTGGTGCCCGCGCAG
GAGTTGTTTTCGCTGAGCTCAAACGATACGCTACCAGAGGACACAAGCTC
ATCACAGCCTACACCCGTTGCAGAGGTTGCCGTAGGGGTAGAGAGGCCAT
CAACAGCACCAGGAGCTGTGCCGGTAACGATCGTAACAGGCTTCCTGGGA
GCAGGAAAGACGACCCTGCTCAATTACATACTCACCCAGGACCATGGTCG
ACGCATCGCGGTGATTGAGAACGAGGTTGGAGACAGCATGGACATCGAGT
CGCTTATCGCGAAGGATGGCGCCGACGGATCGGTCTTGGCGGACAACCTT
TTCGAGCTCAGGAACGGTTGTATTTGCTGCGCGGTCAAGGACGACCTCGT
CACCACCCTGGAGATGTTGCTTCAACGAAGGAACAAGTTCGACTACATCA
TCATCGAGACTACAGGCCTCGCCAACCCGGGTCCTGTAGCGAGTGTTTTT
TGGCTTGACGAGGCCTTGGAAAGCGCTCTGCGGCTCGACAGCATAGTCAC
CTTGGTGGACGCCAAGAATTTTGTGCGACAGCTGCAGCGCGTTCCGGGTG
AGGGAGCCGAGGCCGGCGCGGAGGGAGAGGAGCAGTCCGGGACACGCCCC
AAAAATGAGGCTGCCATGCAAGTGGCCTACGCTGACCGCGTCCTCATCAA
CAAGAGTGACCTCGTGTCTACCGAAACCCTCAAGGACGTGGTTGGACGAG
TGCGAACAATCAACGCTCTAGCCGAAGTTCGTTGCACCAAGCGCTCCGCG
GTGGACCTAGCGTGGATTTTGGACACCGAATGCTTCTCCTCGGAGCTGGC
GGCAGCGGTAGACCCTTCGCTCGCACCGCCTGGGGCTTTGCTAGGCACAG
CCCAACAGAACGAAGGCGGCAGAGGCAGTAGCGCAGCGGATCGAGGGATC
GCTCGAACGGGGTCTCGTCCCGGGGATGCACATGTTCATGCCCGTGACGT
TGAGCCGAGAGCGGGGCACACGGAGAGCTTTCACCACCATGCCGACGGAG
AAGCATGCGATGAGTGCGCCGCGGTAGAAGGGCCTGGCGGCACGGCTTGC
TCTGTGCATGACCCTTCCGTGACCACCTGCGCGGTAGACTTGCCAGGTTC
GTTGGACCTCTCGCGTCTGGAGCGGTGGCTTGGGGGCTTGCTATGGGACC
CACCCCCAGGAGGGACGGAGGTGTATCGCGTCAAGGGGGTGGTTAGCGTG
GAGGGTAGAGGCGAGCGCTTCGTCGTCCAGGGTGTGGCTGACCTGTTCGA
GGTGACGCCGGTAGAGGTGATCGGCAGTGCTTGGCAAGAAGGAGAGGCAC
GACGGTGCAAAGTGGTGTTCATCGGGCGGTTGCTGTCCTCGAGGGACCTC
GAGCGAGGCATAAGGTCGTGTATGGTTCAGGACTAGAGATCGGTGTTGTT
TTTCTTCGCCGGAGAATGGTATGCCCTTCACACCATTTGTTAGCGCGGAG
GGACACACACGTGCGTGTTCGTGTTTTCCTTCAAACGTTGAAGCTCGTGC
CTGACACGAGCCGAGCTGATGTTGTTGTCTCCTGGCTTGGTTGGTGATGC
TGGGTAGGCCTTGCATCGCCGAACCTAGCAAGAACATTTTGTATTGCTCC
CGTGAAGTGGTCGCGTAAGCCGTATGGTACTTGGTGTGAAGCGGATGAGG
AAATGCATTCGGCATTCGTGGTGGGTGTCCACGTGTATTTCTACAGCCAT
AGGGCTTCTTGGGGTGAATCAAGATTGATTAAGCGACACCCGAACCCTAC
CGTAGTCTCGAGTATGTAAGTGCTAGTGTTGCCTTGCCTGCTTGCTGTGT
ACAATAGCAAGTTACACCCACGAGACTCACCAAGAATTCATGTTCTGTTC
CTGCAACGTAGACGAGGTATCTAAGTGGAAATGGTGCATTGGAGCGCCGT
TAAAAAATGTTTCAGTGTTGACGTGTGTACCCCATCTATTCTGACACCAG
ACTGCGCACAGGTGTCTATG
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protein sequence of EsuBft99_3a-0001

>EsuBft99_3 ID=EsuBft99_3|Name=EsuBft99_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=476bp
MESDDDYPPDLVPAQELFSLSSNDTLPEDTSSSQPTPVAEVAVGVERPST
APGAVPVTIVTGFLGAGKTTLLNYILTQDHGRRIAVIENEVGDSMDIESL
IAKDGADGSVLADNLFELRNGCICCAVKDDLVTTLEMLLQRRNKFDYIII
ETTGLANPGPVASVFWLDEALESALRLDSIVTLVDAKNFVRQLQRVPGEG
AEAGAEGEEQSGTRPKNEAAMQVAYADRVLINKSDLVSTETLKDVVGRVR
TINALAEVRCTKRSAVDLAWILDTECFSSELAAAVDPSLAPPGALLGTAQ
QNEGGRGSSAADRGIARTGSRPGDAHVHARDVEPRAGHTESFHHHADGEA
CDECAAVEGPGGTACSVHDPSVTTCAVDLPGSLDLSRLERWLGGLLWDPP
PGGTEVYRVKGVVSVEGRGERFVVQGVADLFEVTPVEVIGSAWQEGEARR
CKVVFIGRLLSSRDLERGIRSCMVQD
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mRNA from alignment at Scaffold_501:41833..45440-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_3a-0001 ID=EsuBft99_3a-0001|Name=EsuBft99_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3608bp|location=Sequence derived from alignment at Scaffold_501:41833..45440- (Ectocarpus subulatus male Bft15b)
TCACACACCAACACACCTGCAGCAGCAGGCAGAGACAGAGAAACAGAGAA AGCAAATGGAAAGTGACGACGACTACCCTCCTGACCTGGTGCCCGCGCAG GAGTTGTTTTCGCTGAGCTCAAACGATACGCTACCAGAGGACACAAGCTC ATCACAGCCTACACCCGTTGCAGAGGTTGCCGTAGGGGTAGAGAGGCCAT CAACAGCACCAGGAGCTGTGCCGGTAACGATCGTAACAGGCTTCCTGGGA GCAGGAAAGACGACCCTGCTCAATTACATACTCACCCAGGACCATGGTCG ACGCATCGCGGTGATTGAGAACGAGGTTGGAGACAGCATGGACATCGAGT CGCTTATCGCGAAGGTGAGGAGAAACGAACAAGACGGGCCCTGCCTGTTC GTGCGCCATGGCAATTACAGGTGTCAGTAAATGGCACTCTGTACAGCAGT TAAGCTGTACCTAGTCGTTTACATGGGGCGTTGAGATATTTAGCAGCACT GCCATAGGCCTCTGTACGGACTGCTGTAGCCAGGCACTGCCGTGACCTTG TGGTAGGTCATCCTACATTCCACATTTATTTTTATAGGTTTTGAGGCATT CGTTTGACAAAACGCTGCCTTGTCGTCCGTTCAAAGAGCACTTTCAACAT TAAACACCATTTGGCAGTTATATGGAGGTCAGGATGGAAGGATATGGTAA ATTCATGTGCTATGGACTCACATGTGTGGCCGCTGGGGAGCGTGGCGGGA ACGCGGCAGGCCACGGCAGGCAATCGAGGGCATGGTACGACAGGCTGGAT CATGAGTGTGGCGAAGCTCGTGGCGGGGGCGTACATATCGCCTATCGCCT TCAGGATCCACGCCCGAGGATTCCCCCCTGCCGCAGCTTTCTGGACCCGA GCGACTACCCCCGCTTTCAGAGAATCGCAACGATCTAGAAGCAACGTGGT GCTCTGTGAGCTGGAGGCATCTGCGTGGTGGTACTGGAAAACCTACGCAA TTGCCAGAGTGTCGGTGTCATCGCGCGGTCACCGTTGTGGGCGGTGCCGC TGTACCTGTCACTCCTGTTGCTTCCACGCTGTCGCCGTGGTCGTTGTTGA CGCCAATGTGAAAAGAGAAAAGACGGAATCGTCCTGGACAGATGAGACGT CGCAAAGATTGTATGTACCCTTTATGATAGGGGTCGCCACAGTCAGTTGC AGCTCATAGTCCAATACGTCGGCGATGTACAGACACAACCCGCCGTTTGC TCTTCACACTAGTCCCGTGTATTCGGTTGTAAGCCATGACTACCTACAAC ACGTGCCGTTCCCGTTGTTGCAACAGGATGGCGCCGACGGATCGGTCTTG GCGGACAACCTTTTCGAGCTCAGGAACGGTTGTATTTGCTGCGCGGTCAA GGACGACCTCGTCACCACCCTGGAGATGTTGCTTCAACGAAGGAACAAGT TCGACTACATCATCATCGAGACTACAGGCCTCGCCAACCCGGTGAGAGCA CGATTCGCCTCTTCAGCGGGTAGATGTGTGGGCACCGTAGCGCAAGCGCG GCCATTTAGTCTCCACACTGCATTGCCTAGAGTGTCATCTCGAAAAGAAT ATCCGTTTTCAACCGTGTACCACCTTGCTGAGTAGAATCGTGCACCGTGC GGTTTGTGTGTACATGTAGGCTGTCGATGCCCTATTCTACAATGCACAAA CGAACACCATTCAGATGCAGTAGTCGAACCAGTTTGTTTATGACATGTTA GGAAGCTGACAATGACGTCGAATTTTTGTGCTGCCCGTCGCTCTTTCCCA TTTTCCAGGGTCCTGTAGCGAGTGTTTTTTGGCTTGACGAGGCCTTGGAA AGCGCTCTGCGGCTCGACAGCATAGTCACCTTGGTGGACGCCAAGAATTT TGTGCGACAGCTGCAGCGCGTTCCGGGTGAGGGAGCCGAGGCCGGCGCGG AGGGAGAGGAGCAGTCCGGGACACGCCCCAAAAATGAGGCTGCCATGCAA GTGGCCTACGCTGACCGCGTCCTCATCAACAAGGTGCGGTCGTATTGAAA GACGGCACACCAAAAGGAGCACGTGGCGTGCAGGCGCGAGCGACGCACCC CAAAGCAGCTGCGTTAATGTTGAAACGTTCAACCCGAGAAAATAACTGTA TAAATTTTACAGCAGTGACAGCAGCGACATGCATGGAGTTCGCTGTTGCG TTGGTGTCCTCCCTCAACCCTCCCCGCCTATGCTGCTGCTTTGCTTCTTG TGTTGTCTCTCTCTCTCTCGGGCGACGTCTCCGTTATCGAAGAGTGACCT CGTGTCTACCGAAACCCTCAAGGACGTGGTTGGACGAGTGCGAACAATCA ACGCTCTAGCCGAAGTTCGTTGCACCAAGCGCTCCGCGGTGGACCTAGCG TGGATTTTGGACACCGAATGCTTCTCCTCGGAGCTGGCGGCAGCGGTAGA CCCTTCGCTCGCACCGCCTGGGGCTTTGCTAGGCACAGCCCAACAGAACG AAGGCGGCAGAGGCAGTAGCGCAGCGGATCGAGGGATCGCTCGAACGGGG TCTCGTCCCGGGGATGCACATGTTCATGCCCGTGACGTTGAGCCGAGAGC GGGGCACACGGAGAGCTTTCACCACCATGCCGACGGAGAAGCATGCGATG AGTGCGCCGCGGTAGAAGGGCCTGGCGGCACGGCTTGCTCTGTGCATGAC CCTTCCGTGACCACCTGCGCGGTAGACTTGCCAGGTTCGTTGGACCTCTC GCGTCTGGAGCGGTGGCTTGGGGGCTTGCTATGGGACCCACCCCCAGGAG GGACGGAGGTGTATCGCGTCAAGGGGGTGGTTAGCGTGGAGGGTAGAGGC GAGCGCTTCGTCGTCCAGGGTGTGGCTGACCTGTTCGAGGTGACGCCGGT AGAGGTGATCGGCAGTGCTTGGCAAGAAGGAGAGGCACGACGGTGCAAAG TGGTGTTCATCGGGCGGTTGCTGTCCTCGAGGGACCTCGAGCGAGGCATA AGGTCGTGTATGGTTCAGGACTAGAGATCGGTGTTGTTTTTCTTCGCCGG AGAATGGTATGCCCTTCACACCATTTGTTAGCGCGGAGGGACACACACGT GCGTGTTCGTGTTTTCCTTCAAACGTTGAAGCTCGTGCCTGACACGAGCC GAGCTGATGTTGTTGTCTCCTGGCTTGGTTGGTGATGCTGGGTAGGCCTT GCATCGCCGAACCTAGCAAGAACATTTTGTATTGCTCCCGTGAAGTGGTC GCGTAAGCCGTATGGTACTTGGTGTGAAGCGGATGAGGAAATGCATTCGG CATTCGTGGTGGGTGTCCACGTGTATTTCTACAGCCATAGGGCTTCTTGG GGTGAATCAAGATTGATTAAGCGACACCCGAACCCTACCGTAGTCTCGAG TATGTAAGTGCTAGTGTTGCCTTGCCTGCTTGCTGTGTACAATAGCAAGT TACACCCACGAGACTCACCAAGAATTCATGTTCTGTTCCTGCAACGTAGA CGAGGTATCTAAGTGGAAATGGTGCATTGGAGCGCCGTTAAAAAATGTTT CAGTGTTGACGTGTGTACCCCATCTATTCTGACACCAGACTGCGCACAGG TGTCTATG
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Coding sequence (CDS) from alignment at Scaffold_501:41833..45440-

>EsuBft99_3a-0001 ID=EsuBft99_3a-0001|Name=EsuBft99_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_501:41833..45440- (Ectocarpus subulatus male Bft15b)
ATGGAAAGTGACGACGACTACCCTCCTGACCTGGTGCCCGCGCAGGAGTT
GTTTTCGCTGAGCTCAAACGATACGCTACCAGAGGACACAAGCTCATCAC
AGCCTACACCCGTTGCAGAGGTTGCCGTAGGGGTAGAGAGGCCATCAACA
GCACCAGGAGCTGTGCCGGTAACGATCGTAACAGGCTTCCTGGGAGCAGG
AAAGACGACCCTGCTCAATTACATACTCACCCAGGACCATGGTCGACGCA
TCGCGGTGATTGAGAACGAGGTTGGAGACAGCATGGACATCGAGTCGCTT
ATCGCGAAGGATGGCGCCGACGGATCGGTCTTGGCGGACAACCTTTTCGA
GCTCAGGAACGGTTGTATTTGCTGCGCGGTCAAGGACGACCTCGTCACCA
CCCTGGAGATGTTGCTTCAACGAAGGAACAAGTTCGACTACATCATCATC
GAGACTACAGGCCTCGCCAACCCGGGTCCTGTAGCGAGTGTTTTTTGGCT
TGACGAGGCCTTGGAAAGCGCTCTGCGGCTCGACAGCATAGTCACCTTGG
TGGACGCCAAGAATTTTGTGCGACAGCTGCAGCGCGTTCCGGGTGAGGGA
GCCGAGGCCGGCGCGGAGGGAGAGGAGCAGTCCGGGACACGCCCCAAAAA
TGAGGCTGCCATGCAAGTGGCCTACGCTGACCGCGTCCTCATCAACAAGA
GTGACCTCGTGTCTACCGAAACCCTCAAGGACGTGGTTGGACGAGTGCGA
ACAATCAACGCTCTAGCCGAAGTTCGTTGCACCAAGCGCTCCGCGGTGGA
CCTAGCGTGGATTTTGGACACCGAATGCTTCTCCTCGGAGCTGGCGGCAG
CGGTAGACCCTTCGCTCGCACCGCCTGGGGCTTTGCTAGGCACAGCCCAA
CAGAACGAAGGCGGCAGAGGCAGTAGCGCAGCGGATCGAGGGATCGCTCG
AACGGGGTCTCGTCCCGGGGATGCACATGTTCATGCCCGTGACGTTGAGC
CGAGAGCGGGGCACACGGAGAGCTTTCACCACCATGCCGACGGAGAAGCA
TGCGATGAGTGCGCCGCGGTAGAAGGGCCTGGCGGCACGGCTTGCTCTGT
GCATGACCCTTCCGTGACCACCTGCGCGGTAGACTTGCCAGGTTCGTTGG
ACCTCTCGCGTCTGGAGCGGTGGCTTGGGGGCTTGCTATGGGACCCACCC
CCAGGAGGGACGGAGGTGTATCGCGTCAAGGGGGTGGTTAGCGTGGAGGG
TAGAGGCGAGCGCTTCGTCGTCCAGGGTGTGGCTGACCTGTTCGAGGTGA
CGCCGGTAGAGGTGATCGGCAGTGCTTGGCAAGAAGGAGAGGCACGACGG
TGCAAAGTGGTGTTCATCGGGCGGTTGCTGTCCTCGAGGGACCTCGAGCG
AGGCATAAGGTCGTGTATGGTTCAGGACTAG
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