EsuBft99_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft99_23a-0001
Unique Name	EsuBft99_23a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_501	contig	Scaffold_501:260040..261730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft99_23
Protein domains	Coil
Protein domains	IPR000477
Protein domains	PTHR19446
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	169
Hectar predicted targeting category	other localisation
Evalue	4.64e-133
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft99_23a	EsuBft99_23a	Ectocarpus subulatus male Bft15b	gene	Scaffold_501 260040..261730 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_23a-0001-exon	EsuBft99_23a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_501 260040..261730 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_23a-0001-exon	agat-five_prime_utr-15610	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_501 260040..260173 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_23a-0001-cds	EsuBft99_23a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_501 260174..261670 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_23a-0001-exon	agat-three_prime_utr-23941	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_501 261671..261730 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_23a-0001	EsuBft99_23	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_501 260174..261670 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_501:260040..261730+
coding sequence from alignment at Scaffold_501:260040..261730+

spliced messenger RNA

>EsuBft99_23a-0001 ID=EsuBft99_23a-0001|Name=EsuBft99_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1691bp|location=Sequence derived from alignment at Scaffold_501:260040..261730+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAG
GTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGT
AAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATG
ATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGAC
GCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAA
GAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATA
GATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATAC
CTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAA
GGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCG
CAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTA
ATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAA
GGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCC
TAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGG
ATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTA
TCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGG
CGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAG
GTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCT
GGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTG
CCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGT
CTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCT
ACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCG
GGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAG
GAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGT
TCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACG
TGACTGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCA
TGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGT
TGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACAT
TTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGAT
CGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGG
TCTAACCGCTAAGGCATGCAAAACACAAAGAGTACGCCCCCCCCACCCCC
CACATCGTACCTTCTTCCCCACGACTCTCTCTGCCGTTGTGTTCACTATG
GACTCCCACCCTACAATGACCCTGTCCCTGCTGCTTGTACGTCCACCTGT
CCGTCTTCAACGCTCCTCAGCAGTTTGCTGAAAGGTTGTACACTACCAGC
CAGTACCTTCTGGAATTCATCCCGTGTCCCATCGTCTCCCA

protein sequence of EsuBft99_23a-0001

>EsuBft99_23 ID=EsuBft99_23|Name=EsuBft99_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=498bp
MLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSANVQKSAVMVCNENKE
EPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKVAEKGKARAGK
LHPILANRHLDTRIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMK
AAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLP
RIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEK
ISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLK
VKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKK
EREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRID
RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRV
RPPHPPHRTFFPTTLSAVVFTMDSHPTMTLSLLLVRPPVRLQRSSAVC

mRNA from alignment at Scaffold_501:260040..261730+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft99_23a-0001 ID=EsuBft99_23a-0001|Name=EsuBft99_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1691bp|location=Sequence derived from alignment at Scaffold_501:260040..261730+ (Ectocarpus subulatus male Bft15b)
TTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAG
GTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGT
AAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATG
ATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGAC
GCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAA
GAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATA
GATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATAC
CTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAA
GGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCG
CAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTA
ATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAA
GGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCC
TAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGG
ATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTA
TCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGG
CGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAG
GTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCT
GGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTG
CCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGT
CTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCT
ACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCG
GGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAG
GAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGT
TCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACG
TGACTGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCA
TGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGT
TGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACAT
TTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGAT
CGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGG
TCTAACCGCTAAGGCATGCAAAACACAAAGAGTACGCCCCCCCCACCCCC
CACATCGTACCTTCTTCCCCACGACTCTCTCTGCCGTTGTGTTCACTATG
GACTCCCACCCTACAATGACCCTGTCCCTGCTGCTTGTACGTCCACCTGT
CCGTCTTCAACGCTCCTCAGCAGTTTGCTGAAAGGTTGTACACTACCAGC
CAGTACCTTCTGGAATTCATCCCGTGTCCCATCGTCTCCCA

Coding sequence (CDS) from alignment at Scaffold_501:260040..261730+

>EsuBft99_23a-0001 ID=EsuBft99_23a-0001|Name=EsuBft99_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1497bp|location=Sequence derived from alignment at Scaffold_501:260040..261730+ (Ectocarpus subulatus male Bft15b)
ATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACT
GCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGT
CTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAG
GAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGT
GGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGA
ATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAG
CTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGAC
GGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTAT
GGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAA
GCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGT
GAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGA
AGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCG
AGAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACC
CACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCG
ACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAG
ATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATC
CAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAG
GGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAG
GTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACA
TAGGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCG
AATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAG
GAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGAACGTACAG
GGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGG
GGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGAC
AGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACG
ATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAG
GACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACACAAAGAGTA
CGCCCCCCCCACCCCCCACATCGTACCTTCTTCCCCACGACTCTCTCTGC
CGTTGTGTTCACTATGGACTCCCACCCTACAATGACCCTGTCCCTGCTGC
TTGTACGTCCACCTGTCCGTCTTCAACGCTCCTCAGCAGTTTGCTGA