EsuBft99_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_21a-0001
Unique NameEsuBft99_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:241459..247569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVA1
ProteomeIdEsuBft99_21
Protein domainsPTHR12732
Ownerapollo_admin@sb-roscoff.fr
Notepci domain-containing protein 2 os:xenopus laevis gn:pcid2 pe:2 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1594
Hectar predicted targeting categorymitochondrion
Evalue1.81e-135
EggNOG OGsCOG5600@1|root,KOG2688@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Descriptionposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0048856
GO0007275
GO0048522
GO0060255
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_21aEsuBft99_21aEctocarpus subulatus male Bft15bgeneScaffold_501 241459..247569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_21a-0001EsuBft99_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 242336..247569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_21a-0001-exonEsuBft99_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 241459..242527 -
EsuBft99_21a-0001-exonagat-exon-40623Ectocarpus subulatus male Bft15bexonScaffold_501 243153..243294 -
EsuBft99_21a-0001-exonagat-exon-40624Ectocarpus subulatus male Bft15bexonScaffold_501 244891..244963 -
EsuBft99_21a-0001-exonagat-exon-40627Ectocarpus subulatus male Bft15bexonScaffold_501 245848..245959 -
EsuBft99_21a-0001-exonagat-exon-40626Ectocarpus subulatus male Bft15bexonScaffold_501 246931..247048 -
EsuBft99_21a-0001-exonagat-exon-40625Ectocarpus subulatus male Bft15bexonScaffold_501 247490..247569 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_21a-0001-exonagat-three_prime_utr-23939Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 241459..242335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_21a-0001-cdsEsuBft99_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 242336..242527 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_21a-0001 ID=EsuBft99_21a-0001|Name=EsuBft99_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1594bp|location=Sequence derived from alignment at Scaffold_501:241459..247569- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGCACATGGCTGTCGTGCTGTTCAAGCACTGCTTCAAGCTCAA
CCGCCTCAGAATGTGCCAAGATTTGTCCAAGAACGTACGAGGGGGGACAG
GCCATGCGGAAAGCTTGGCTGCCCGCGCAGACGTGGTGGCTTTTCTCTAC
TACGAAGGCTTGACTTTCATGCACAACGCTGCCAACGACAAACACGAGAG
GGCTAGGGCAGAGGCAACGCTAACCAGGGCTCTCAAAGAGTGCCATGTGG
CGGCTACGGGAAACCGACGACGAATTCTGGTGAACCTCGTGCCCCTGAGA
ATGAGGATGGGATGTTTGCCGGCGCGACGCCTGCTGGAGAAGTACGACTT
GCTCATATTCGATGACTTCTCCTCTGCCATACGGGTGATCGTTCTCGGGC
TTGTTCTGAGGGGGCACGAGTTCGACATCGACAACGATAGCTTTGATCCC
CAACAGAGCGCCGAGGAGCGAGAGCTTGCCCGATGGGACGAGGTGACGTT
CATACTCGCTGGCCTTATCATGGACGGGCTGATCAGCGGCGTTGTGAGGA
GTCGCGATGCTCAGCTGCTGCTCAGCAAGAAGACCGGCTTCCCTGATTTG
CCGGAAGTAACCGAAACCGGCCTTCGACCTCGACTTCGACCTCGACCTCG
ACCTCGACCTCCCTCTGGCCACCTCAGACCGACAAGCACCTTCAGCATTC
TTCCCGTCAAGGTTTAGTTGTAGAGTGAGTTGCAGTAGTTGTCAAGAGGA
ACACCAGTGCGGCTGAAGGCGGCACAGTATAACAGCAGCGGTGGCAGTAA
AGATTAAGATTGGCCTCGAGATTTCTCGTCGACACAACCGGGTCAGGCGC
TGGTGGTGGGGGTGAATTGGCGTGACGAAGGAGGGGAGGAGGACAAGCCC
GTTGTGTGCCTGCGAGTGGTTCGACACAGCATGTGCTGTTGCAGTATCGT
TTGGGGGTATGTACTTGTTGTGGGGCATCTAGTTATATAATAGTTTGATT
TTTAACTTCGTGACTACTGTGTAAGCACATGTATGCGTTTGTACTCATGC
CACACCATCCATCGTTACTTGGGCGGTTGTTGCAAGGGCGTGGCCAGGTT
GGTCGTTCGAGACTTGACTTGTGTTTTTCTTACACCTACCTCAACACCCT
CAGAATGCGCGGGATGAAATACATGGAGGGAAATGGTAACGACGACTGAA
GACTTAAGACTGAATAGAAGTATTTCCTTGTACTTTGTTGCACCGTGGCT
TTATCACGTGCCAGATTCAATCGGGCATTTAGTAAGTCATGCAGGATGGT
TCCGGAGGCATCTCTCTCTCCTCATACATTCCCGGCGTCCATGTTTTCCT
TCCTTCTTTCCTTGATCCTCAGTGTGTAATTGCTCTTGCATCCACCCTTT
GCGAATTGTGTTGCGTGCTGGACTATGATCATGTCCGGTACAGTAGCCAG
GGTCACCGTTTCGTGTTGGTGGTGAATAGGTGTGGGAGTGAAGCGGGCAC
AGGAAATCGAATTTGCTAGGTGTGGGAGGGAAGCCAAGACGGCACAGGAA
ATCGAATTTGCAACACCGTCCGATCGCTGGTTTCTGGTCAGTAC
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protein sequence of EsuBft99_21a-0001

>EsuBft99_21 ID=EsuBft99_21|Name=EsuBft99_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=238bp
MAMHMAVVLFKHCFKLNRLRMCQDLSKNVRGGTGHAESLAARADVVAFLY
YEGLTFMHNAANDKHERARAEATLTRALKECHVAATGNRRRILVNLVPLR
MRMGCLPARRLLEKYDLLIFDDFSSAIRVIVLGLVLRGHEFDIDNDSFDP
QQSAEERELARWDEVTFILAGLIMDGLISGVVRSRDAQLLLSKKTGFPDL
PEVTETGLRPRLRPRPRPRPPSGHLRPTSTFSILPVKV
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mRNA from alignment at Scaffold_501:241459..247569-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_21a-0001 ID=EsuBft99_21a-0001|Name=EsuBft99_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6111bp|location=Sequence derived from alignment at Scaffold_501:241459..247569- (Ectocarpus subulatus male Bft15b)
ATGGCGATGCACATGGCTGTCGTGCTGTTCAAGCACTGCTTCAAGCTCAA
CCGCCTCAGAATGTGCCAAGATTTGTCCAAGTAAGTGCGTCCGTGAGAGA
AGCAAGCGACACCAGCAGCAGTGTTGGGCGTAAAGACTTCCATTAATATG
TACCGGTAATTTATTCTGGAGTTATGGGCTGATGTCACCCCGCTGCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGTCGCTCTCTTGC
TCTTGCTCTCGCTCTCGCTCTCGCTCTCGCTTTTTACCTATCTGTCCACA
TACCTTATGCGTTGTGTGCTCGAACCCAGCTCACTGTACCTACACAGATG
ACTTGTGTGCTGCATGCACTGCTGTGAGGCTTGCCCTTCTGCCGTTGCTG
GCCTCACTATATCCCGTAGGTAACTATCAGCTTCCGATTCCTCATGCTAG
CGTTGTCTGTCGACGCTGTCTGTTCCTGTCCCTCCGTCTCCGCCGCTGCC
TACTGCCTACCTATGTGCCAGGAACGTACGAGGGGGGACAGGCCATGCGG
AAAGCTTGGCTGCCCGCGCAGACGTGGTGGCTTTTCTCTACTACGAAGGC
TTGACTTTCATGCACAACGCTGCCAACGACAAACACGAGGTGTGCACTGT
ACTGTACGGCGTGCGTCTGATCTTCGTCTTCACGACGGTACCGATTGGGA
GACCGTTACGCGATTCAGCAGTAGCATTTGTGTTGTATTGTGTCGCCGGT
GGAGAGATTTCATGCTTGGGCATAGACAGAAAGGCTGACGGCGATTGTTT
GTACGAGAAGCTTCCGCTTTCATGGCGTTTAACAAGGGCAGGCCGGCAGC
GCTGGTAAAGGCGAAAAGGAGCAAAGTAAAACCTTGTCGGAAAGGCGGAG
GCGGAAATATGAAATTTGTCCATGAGTGACGCTTCTTCTGCAGTTAAAAA
TGGGGCACAGTAAGGGAGAGCCCGTGCCTACATACTCCCCATCAGCATTA
TCGGAGTACAATACTGCACACCTCCACCAAATCTGAAGTCGGAACGAGCT
GGCTGACGTTTGCTTTGGATATATCGTCATATTAGCGTGTGCGAGCATCT
TGCTTGGTTTTTGGTGATGTTCATCATTAGGCGTTCGTTCTCGTTCGTGC
AAGCGATACGTATGTGGCTATCAATAGTGTCGTAGGCGTGCTTCTCCTTC
ATTGAGGTACTGGAGTCCAAAGGAGCGGGGGGGGTGCAAGGGAAAACATG
GTGCTGGAACTGGTGCGATAGCAAGTATGCAAAGCCGAGTTCCATCCTTG
ATGAATACATACAACAGCTCTTGGCAAGGACGGCCGCACGTGTAGGCGGC
AAAATCAGCTGGTTGTCAAGTGCGGAGCGCCATGTATGCACCACCCCGCA
TTGAAAAACAGCGACGCCACCGTCTGGCGGTATCCAGTGTACCAGTACGA
AGCATGACAAACCACCACCACCTTTGCCTGCAGGATAAGGATATGCTGCA
CAACTCACGCCACAGGATCTCTCAGACCACCGCTACAATGTATGTATGAG
TGATTGTTCATCCCTGCAACTCGCGGGCCCGTGCCTTAATCGTCTGTTCG
CCCCTCGCAGAGGGCTAGGGCAGAGGCAACGCTAACCAGGGCTCTCAAAG
AGTGCCATGTGGCGGCTACGGGAAACCGACGACGAATTCTGGTGAACCTC
GTGCCCCTGAGAATGAGGATGGGTAAGCTTAAGCTCAAGCTTGTACACCC
GGTGGCTTTTTGCGGTCGTTGTTGGTACCGGAGCAAAATATAACGTCACT
TGACACTTTCGCATGTGAGGCTGCACTGCACCAGAGGGCATGCCGGCCGC
AGAAGGTTGATCTCGCCGTTCGTTCAATTGTTGTTGTGTTGTTTGCATCT
CGCATTCAACGGGTAGAATGCTCTTTCAACGGCTCTTTCGACATGACCTA
CAGTAGTGTGTCGTCGCTATGCTGGGCGTTTTGGATGCTCAACAGGTACA
TGCGGTGATCAAAGCAAACCCCCCGCGCTGTGTTGCGTACTTGAGCGTGT
TTCGTCGCAAAACACTGCTGCTGGATGCACGCCTGCCCCCTCTTGTCCCC
GCTGAAGAGAACCCTTACCTTCTGAGTAGCCTACAGTATTTACATGCGAA
CTGTACTGCACTGCTGATGTTGATGTGTGTGTATCATTCATTGTTGTTAC
TGGCATGGTGCGCACATTCTGTCGCCTGCACCACAGTCGCGACGTGCTCT
TTCGATTGATCACACGCACCCGCAAATATCCATGCCGTGAAAGCTTCACT
ATTAGTGCACGCCACCGTCGCATGTTTTGCACATGTGTGCTGTAGGGCTG
CATCGGTAGACAAGACCGTGCATGTGCCGGCTCTTCGCGGATCTCGGGAG
GCGTTAAAGTCCGACGCCAACGTGCTCTCTGTGCCTCCACCTCCACCATG
GTATAGACTGTATATATATCCGCGGCTGCCTTAGCTCCGGATATGCATCT
CCTGCCAGCTCCATCGTTTATTGCTTGCGTGCTAGATTAGTGATATCTTG
TTTTTTCCAAGCAAAAATTTGCACGTATGATTCGTCCTGTGCCCTGGTGT
TGGCAGGATGTTTGCCGGCGCGACGCCTGCTGGAGAAGTACGACTTGCTC
ATATTCGATGACTTCTCCTCTGCCATACGGTGAGAGAGAGGGAAAGAGAC
GGTTTATCATAGTGACTCACGGGGATTGTGTACATCAGCATCTTCTCTTC
GTGACCATTTTTTCTTCCCATACAGTATTAGTGTGGGATGAGACAGCGTC
CTCACCTCCAGCTAGGCTGGTGATGACACCCATCGTGAAGAGTAGGTGTC
GGTAAAGGATTCGAGTGCGTTATTTGACAGCACTCATCGACTCTGCCTTT
CTCGACGCTATTTAAATACTACTGTACCAGGTAAACGTTTGTGGGGAGGG
CGGGCGGTGGTTAAACATTTCCCCCTCTTGCCTCCTGTTTGCCGTGTCGG
CACTCGGTCGCACAAAACAAGTGATGGTGAAAATGCTTTCTCTGGTAATT
GTTGTCTTTGTTTGTGCACGGCCCTGGAATTGTTTGGAACATTCCAAGAT
CCGTTCCTCATGATGCAGGAGAGACTTAATCCCCGCGCCGGGTGCGTTCT
CTGCGACTGTCCTCCGACCTTCGTGTTACGCCGACTTGCACCCAAAACCA
AACCATTGTACACCACTACACCACCAGTCAGGGAAACCTCAAGCGGTTCT
CTCTGCTCATGAAGCAGCACGAGCGCGCGCTCATATTGTCAGACCTTCTG
CCGCATCTGGAGGGGTGTCGTCGTATGGTATTCAGGCAGGTCCTTAAACA
AATGTGAGTGTGAGTGGACGGGACCGCGTACCACGTGTCTCTATGATATT
GTAGCATCTCTTAAACGCGAAGGCCTTCTACTTGCTAAATAGAGATCCTC
TCTGGATGGTAGAGCAGATTTGTAACGTTCCGGCTGAGTGTCACAGTCAG
TAGCCCCGGCCCTTTAAACTTTAGAGGCAAAGACGCGCCGGGCGTTGTCC
GTTTGGTTTGAGCGGCACGCAACAGTTCGACGCCCATTTGTTTCGATGTG
TGGTTCGTGGTTCGTTTTAACGTATCTTCGAACGGAGAGACAGCAATATC
ATGTTGATCAGTTTCTCTGACGTGCAAGCAAGTGCGCAGGCGCTTGTAAG
GGTATTTTTGTTTCCTTTGGCGCTATCATAGATTCCATGTGTCGTGGTCT
TCGTTGTTGGTTGTTGTTGGTGTTTGTGTGGGTGCAGCAGGTGCTCTATG
TTTAGTCATTGCTTCTCTGTCTCCTTCTCTCTCTCTGTCTCTAGCTCTGT
CTCCAACGCTCCCTGCCCCGTCGCTCTCTTTTCCTTTCTTGACAGAAGGA
AACAGGCCATGATTTACCTAGCATACCGGCCACGTAGGAACTTGTGTGTG
TGTGGCCCATACGCCCGGTCCTACCAAGCCCGCTTCATCCCGTCCAACCA
TACAGCAGTACAACCCCTCCACGTACTGGGGGGGTCCCTGTTTAGTGCCG
GTATGTGCCCAGAAACTATACCGGACCGGTACTATTCACAGTACTGACAA
TGACTTGGAAATTCAGTGTGTACCCGCCGAAAACACCGGCACTGTTCCGA
GCATTGGCACTTTTCAACTGGCACTAAACAGGGACCCCCACCGTACCGTG
TTCCTTCCCCACGTCCCATGTCTCACGTCCTCCATCCAGCGCCACGGCAA
CAGATGCCAACGTCCTTCCGTTCAGGGTGATCGTTCTCGGGCTTGTTCTG
AGGGGGCACGAGTTCGACATCGACAACGATAGCTTTGATCCCCAACAGAG
CGCCGAGGAGCGAGAGCTTGCCCGATGGGACGAGGTGACGTTCATACTCG
CTGGCCTTATCATGGACGTGAGTAAAAGCTGATTGTCGGGAGGGGTCTAG
TGGCCTTGTACGTGATCCGCTGTTGGTGTTGAGGCAGTCGTAGGCCCGAT
GTAGTCACCTTGTTACTGCTTTGATGCCTTGGTCTTATTCTTGCATCGAT
GGGTATGACTTTGGTCACACCCCGATGATCCCATTCTGCGGAGCCCCCTT
GCCCCTTCTGCGGTGATAACCTTCATTCTTATCGTAAGAGAGAACTTGAG
CAATGGGCTTTTTTAGTGTTGCCACGCACAGGCGCTCGCTAAACAGCTGT
GTCACGGCCGAAAGTGTATTCATTGGCCTTTTGCCCAAACAAGCAATTCG
ACCCTTAAGTTAAGCTAGTGGTGGGCGACCCGCATTGTGTGTGTACCAGG
TACGGAATATTTATGGTATGATATACGGGACGTTAACGATGAAATTTCAG
CTTGGCAAGCAGTTCCGATGGTGTTGCTCGGAATGATGTCGAACAAATGA
ACCTAGTTGACTCGGTGAGCACCCTTCCTACAGCATATCGTCGGTCCTAC
ATGAATATCCATCTAACTCATGGTGTTACGTGTACAATGTACAATTGTCA
TCGACGTTGGACGCTTGCTTGTCTCCCATCGTGCACGAAAAGGGGCTGAT
CAGCGGCGTTGTGAGGAGTCGCGATGCTCAGCTGCTGCTCAGCAAGAAGA
CCGGCTTCCCTGATTTGCCGGAAGTAACCGAAACCGGCCTTCGACCTCGA
CTTCGACCTCGACCTCGACCTCGACCTCCCTCTGGCCACCTCAGACCGAC
AAGCACCTTCAGCATTCTTCCCGTCAAGGTTTAGTTGTAGAGTGAGTTGC
AGTAGTTGTCAAGAGGAACACCAGTGCGGCTGAAGGCGGCACAGTATAAC
AGCAGCGGTGGCAGTAAAGATTAAGATTGGCCTCGAGATTTCTCGTCGAC
ACAACCGGGTCAGGCGCTGGTGGTGGGGGTGAATTGGCGTGACGAAGGAG
GGGAGGAGGACAAGCCCGTTGTGTGCCTGCGAGTGGTTCGACACAGCATG
TGCTGTTGCAGTATCGTTTGGGGGTATGTACTTGTTGTGGGGCATCTAGT
TATATAATAGTTTGATTTTTAACTTCGTGACTACTGTGTAAGCACATGTA
TGCGTTTGTACTCATGCCACACCATCCATCGTTACTTGGGCGGTTGTTGC
AAGGGCGTGGCCAGGTTGGTCGTTCGAGACTTGACTTGTGTTTTTCTTAC
ACCTACCTCAACACCCTCAGAATGCGCGGGATGAAATACATGGAGGGAAA
TGGTAACGACGACTGAAGACTTAAGACTGAATAGAAGTATTTCCTTGTAC
TTTGTTGCACCGTGGCTTTATCACGTGCCAGATTCAATCGGGCATTTAGT
AAGTCATGCAGGATGGTTCCGGAGGCATCTCTCTCTCCTCATACATTCCC
GGCGTCCATGTTTTCCTTCCTTCTTTCCTTGATCCTCAGTGTGTAATTGC
TCTTGCATCCACCCTTTGCGAATTGTGTTGCGTGCTGGACTATGATCATG
TCCGGTACAGTAGCCAGGGTCACCGTTTCGTGTTGGTGGTGAATAGGTGT
GGGAGTGAAGCGGGCACAGGAAATCGAATTTGCTAGGTGTGGGAGGGAAG
CCAAGACGGCACAGGAAATCGAATTTGCAACACCGTCCGATCGCTGGTTT
CTGGTCAGTAC
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Coding sequence (CDS) from alignment at Scaffold_501:241459..247569-

>EsuBft99_21a-0001 ID=EsuBft99_21a-0001|Name=EsuBft99_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=717bp|location=Sequence derived from alignment at Scaffold_501:241459..247569- (Ectocarpus subulatus male Bft15b)
ATGGCGATGCACATGGCTGTCGTGCTGTTCAAGCACTGCTTCAAGCTCAA
CCGCCTCAGAATGTGCCAAGATTTGTCCAAGAACGTACGAGGGGGGACAG
GCCATGCGGAAAGCTTGGCTGCCCGCGCAGACGTGGTGGCTTTTCTCTAC
TACGAAGGCTTGACTTTCATGCACAACGCTGCCAACGACAAACACGAGAG
GGCTAGGGCAGAGGCAACGCTAACCAGGGCTCTCAAAGAGTGCCATGTGG
CGGCTACGGGAAACCGACGACGAATTCTGGTGAACCTCGTGCCCCTGAGA
ATGAGGATGGGATGTTTGCCGGCGCGACGCCTGCTGGAGAAGTACGACTT
GCTCATATTCGATGACTTCTCCTCTGCCATACGGGTGATCGTTCTCGGGC
TTGTTCTGAGGGGGCACGAGTTCGACATCGACAACGATAGCTTTGATCCC
CAACAGAGCGCCGAGGAGCGAGAGCTTGCCCGATGGGACGAGGTGACGTT
CATACTCGCTGGCCTTATCATGGACGGGCTGATCAGCGGCGTTGTGAGGA
GTCGCGATGCTCAGCTGCTGCTCAGCAAGAAGACCGGCTTCCCTGATTTG
CCGGAAGTAACCGAAACCGGCCTTCGACCTCGACTTCGACCTCGACCTCG
ACCTCGACCTCCCTCTGGCCACCTCAGACCGACAAGCACCTTCAGCATTC
TTCCCGTCAAGGTTTAG
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