EsuBft99_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_18a-0001
Unique NameEsuBft99_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:208641..208916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft99_18
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length27
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_18aEsuBft99_18aEctocarpus subulatus male Bft15bgeneScaffold_501 208641..208916 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_18a-0001-exonEsuBft99_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 208641..208916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_18a-0001-cdsEsuBft99_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 208641..208916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_18a-0001EsuBft99_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 208641..208916 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_18a-0001 ID=EsuBft99_18a-0001|Name=EsuBft99_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=276bp|location=Sequence derived from alignment at Scaffold_501:208641..208916- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTACTCTCTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACTACATCTCCGGGTCCTTGGCGCTCTCTTTCCAT
TTCCCGTCTTCCTTTTCGTCTCCTATGTTGAAGGCCACGAGGTCCTCTCC
TAGACGAGACACCCAGTCGCTCTCCTGCCCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft99_18a-0001

>EsuBft99_18 ID=EsuBft99_18|Name=EsuBft99_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MTVLSASASLARWRFADASASCLCHFLMNHAAPSSTLLYYISGSLALSFH
FPSSFSSPMLKATRSSPRRDTQSLSCPXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_501:208641..208916-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_18a-0001 ID=EsuBft99_18a-0001|Name=EsuBft99_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=276bp|location=Sequence derived from alignment at Scaffold_501:208641..208916- (Ectocarpus subulatus male Bft15b)
ATGACCGTACTCTCTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACTACATCTCCGGGTCCTTGGCGCTCTCTTTCCAT
TTCCCGTCTTCCTTTTCGTCTCCTATGTTGAAGGCCACGAGGTCCTCTCC
TAGACGAGACACCCAGTCGCTCTCCTGCCCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_501:208641..208916-

>EsuBft99_18a-0001 ID=EsuBft99_18a-0001|Name=EsuBft99_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_501:208641..208916- (Ectocarpus subulatus male Bft15b)
ATGACCGTACTCTCTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACTACATCTCCGGGTCCTTGGCGCTCTCTTTCCAT
TTCCCGTCTTCCTTTTCGTCTCCTATGTTGAAGGCCACGAGGTCCTCTCC
TAGACGAGACACCCAGTCGCTCTCCTGCCCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
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