EsuBft99_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft99_17a-0001
Unique Name	EsuBft99_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_501	contig	Scaffold_501:192958..196329 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft99_17
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE
Protein domains	IPR011050
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	IPR012334
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	116
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft99_17a	EsuBft99_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_501 192958..196329 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_17a-0001-exon	agat-exon-40616	Ectocarpus subulatus male Bft15b	exon	Scaffold_501 192958..193407 +
EsuBft99_17a-0001-exon	EsuBft99_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_501 195615..196329 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_17a-0001-exon	agat-five_prime_utr-15607	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_501 192958..192987 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_17a-0001-cds	EsuBft99_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_501 192988..193407 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_17a-0001-exon	agat-three_prime_utr-23936	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_501 196014..196329 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_17a-0001	EsuBft99_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_501 192988..196013 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_501:192958..196329+
coding sequence from alignment at Scaffold_501:192958..196329+

spliced messenger RNA

>EsuBft99_17a-0001 ID=EsuBft99_17a-0001|Name=EsuBft99_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1165bp|location=Sequence derived from alignment at Scaffold_501:192958..196329+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCCGCGGAGGTAGCAGTACAGCAGCAGCAATGGGGTTCACCAGTAAGAC
CGCGGGTCTCGCCCTCTTGTTCCTCGGGCTTGCTGCTAGGCAAGCCTCGG
CTGTCACCTCCTGCCTCGACCTCATCACCGCGGTTGAGGCCATCTCCGAT
ACAGGGACGATAGAGCTCGAGGGCGGCTTTAACTGCGACACATTCATCAC
GGTCACTGCTGGCCAGGATGTCACCATCAGCGGCGCCTACACGATCACCA
TCGGCGCGGGGTTTGCCGGCAGCACGGACGAGGACGGCAGCCTGTTCGTG
AATGAGGGCATCCTGAAGCTCGACGGCATCACGTTCGTTACGGAAACAAC
GAATGGGAACCGCGCTGTCTGGAACGCCGGAGAGCTTTCGGTGGAAGGCT
GCACCTTCGAACTTTACCCTACCGGAGCATTCCTTGCTAGGGGGGGTGTG
ATCTACTCCGACTCTGCTGAAGCAATTGCCATCTCAAACTCCATCTTCAA
ATCAAACCTCGCGAGCGAGAGGGGCGGTGCAGTGTACGCCATCGGCTCCG
AAACCCTCACTATCACGGACTCCCTTTTCAGGGGCAACGAAGTTGGGACG
GGCGTTGACGCGGACGGCGCAGGAGGCGATGTTTACGCAGGCACCAATGT
TGAGCTCACGGTCACTGGCACTACGTTCTCGACGTCTGCGGCCGAGTACG
GCGGAGCTGCCATCGAGTGCTGCGGTGCGGTGATCTCCGATACTGTCTTC
ACGGGAGCGGACACTGCCAGCGACGGCGTGAGTCGACGGATGGGGTTCAA
GCGAGAAAGGATCAAAAGAGACTGCTGTCCTAATCATCTTCTGAACTAGT
ACATCTAATCTGCCTCTGTTTTGGGCCGAGAGCGAAACTCCTTTGCCGCT
GGCATATCTCAACGGAAACGCTCCTGTTTCCAGCACTTGACAATGACATG
CCTGCTGCACAACCAAGCCAGGACTCACGTATTGTCTCCAAGCGGGCATG
TTGGCTGATCTGTTCTTCGCATGCCCTGCATGCCTTCCACCGCCGTCCAA
ATAGTTGTACAGAAGCATGGTCCGTTCACGATAACTTCGGGTTCGTACTG
CTGTATTTGTTGACACCGAGCACTATTGATTCGCTTCCGTTGTACCCATC
TCCCCGACGAACCCA

protein sequence of EsuBft99_17a-0001

>EsuBft99_17 ID=EsuBft99_17|Name=EsuBft99_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MGFTSKTAGLALLFLGLAARQASAVTSCLDLITAVEAISDTGTIELEGGF
NCDTFITVTAGQDVTISGAYTITIGAGFAGSTDEDGSLFVNEGILKLDGI
TFVTETTNGNRAVWNAGELSVEGCTFELYPTGAFLARGGVIYSDSAEAIA
ISNSIFKSNLASERGGAVYAIGSETLTITDSLFRGNEVGTGVDADGAGGD
VYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGV
SRRMGFKRERIKRDCCPNHLLN

mRNA from alignment at Scaffold_501:192958..196329+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft99_17a-0001 ID=EsuBft99_17a-0001|Name=EsuBft99_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3372bp|location=Sequence derived from alignment at Scaffold_501:192958..196329+ (Ectocarpus subulatus male Bft15b)
AGCCGCGGAGGTAGCAGTACAGCAGCAGCAATGGGGTTCACCAGTAAGAC
CGCGGGTCTCGCCCTCTTGTTCCTCGGGCTTGCTGCTAGGCAAGCCTCGG
CTGTCACCTCCTGCCTCGACCTCATCACCGCGGTTGAGGCCATCTCCGAT
ACAGGGACGATAGAGCTCGAGGGCGGCTTTAACTGCGACACATTCATCAC
GGTCACTGCTGGCCAGGATGTCACCATCAGCGGCGCCTACACGATCACCA
TCGGCGCGGGGTTTGCCGGCAGCACGGACGAGGACGGCAGCCTGTTCGTG
AATGAGGGCATCCTGAAGCTCGACGGCATCACGTTCGTTACGGAAACAAC
GAATGGGAACCGCGCTGTCTGGAACGCCGGAGAGCTTTCGGTGGAAGGCT
GCACCTTCGAACTTTACCCTACCGGAGCATTCCTTGCTAGGGGGGGTGTG
GTAAGTGAAACCATATACGCCACCCTCCCAGATATTGATATGCACGAACA
AGACACAAGACAACTAAAGTACCCTAGCGTCACCTCTCGTTCGCTTCCTG
CCTCACGTCCTTTCTTTCGTGGTCGGTAAAGTTGTTCCTTGCTGCTGCTG
ATCCCAACGCCACACAGAATCGTGAGCCGTGGCCGCGGGTGTCGTCTGCC
ACATTATGCATTGTATGACGTGTTGACGTGAAGGAGAGGACGTGGCAGGG
CAGGCAACTTGTTGGAATTAGTTGGACGTGGCATTTTATCGAACTTGTGC
CTCCTCTCTCTCAAGCTTGCCCCTCCCCTGATGTATATCACGCAGAAGAC
CAAGTGGCCCTCTCTGATGACTGATGGCTGATGTCCGACATGCTGACATT
TGTTCTCACTATTGTAGTCACTGGTTGCTGGTCAGCTGTTGGTCTTCCAC
AGGCTGAAAAATCGAAAAATTGTTCCCGCGCCACGTGCTTTCGGATGAAC
CCCAACACTTCCTCACCTCACACCCAGAGCTACAAACACCCATTCTTGCT
CGGGGTGGGATGCAGCATGTAAGTGTACGGTAGGCTTGTCCGGCATTATC
CCCTCACCTGGACGCCTTCCGTTTTTTCTACTCTGGTCGGATTCTGTACG
TACGATCGATATCCTGGTCCTTATTTTCTTGTGTAGTATTTTTAAACGGG
AGGCACAACACTGTACATAGTTACAATACCCCGAACGAACAGCAGCGGCA
GGCTGAGCAGAGCTCGGACGGCCGCCAATTGGATTTTACCACACAATAAT
GAGCTGAGCGTAGCGCGGTGCCCGTTAACATTTTCTGAAATGACAGCGTG
CATAATTTCTCCGCGTGTTGTACCAGTTCTGTTCACCCTCTCGCTTGCTC
AACGTCCGTTTTGCAAATTGCCAAGGAAGAGAGGAATAATCTCGCACGGG
CAGTCTCTCTGTGAGATTGTTTTCTTTCTAGAAATAGACGCACAGAGATG
AAGCAGCAGGTCTGTGTGTACGCCTAAGATGCATGCGAACGTCTCTGTGT
TGGAGCATGATGACCTCTTGATTTCCAGTCTGCGCTGACTGGTGGTTTAG
TGGTCATCGTGCTTCTCAACGATAGTTATTGCCCGTGTCCGGTCTGGCTT
TGCAGCCACGAACACGTCACCCCAGGGTTGCCATACCTGTCATCAGCGCT
GTACTTGGCAGGTAAATATAAGCAAGTCATCGGCTCGTTCTGCGAAGCCT
TCTTTCCTCAGACGTTCTTTCCCTCATAAATTTATCTGTCTGTCACACCT
CTCACCAGGGAAGGAATTGGGGGTGAAGTTTCCCGTATCCTGTCTCTCTA
CGGCAATAGTTGTGCACGAATCAATGTCCAAATGCCATGTCTTATCCGAC
GCATGGGCATGCATGTTAATAGCGTTGGTGCACAAGTGTATGATATGCGT
GGAATTTTCAATTTGCTGGTTTGGAAGTTTCCATGTGGTGAAAATCTCTT
TTCTCACAGATCAGTCACTTTGTAGTCACAAGCGGTTCCCAAGCGAAGAC
GCGAAAGGGTGACAAAACATGATGAATTGGTTATGTCAACCGCGAAATAA
AACTTGAAGTGAGAAAACAGCACTCTCACCCACTACAGACACACGTCACC
GAGTTCCTCAAGGAGCACGAACGGCATGCCAACTACCTACATGTCTCCGA
GCCCCCATCATAACACGCGCATACCGTACACCTTGTACGACACAACACAC
CCCCTGGACCTATTTTTTAAGCTCGATTTATCAAAAGCAGAAATAATAAA
ATAATCGCAGCGCCGAAACAGGCGGCGTTGAAGCCGTCTGGTCCAGAGAT
GTCCGAAAACGTATCGCTTCGTGTATGCATCCTCTTCGTCGTGGAGTTCT
CGAGCTTTAGTTCCGATCAAGGAGGTGCGGTATCAAATGTCATACACGGC
ATACATCTGTAAAATTCACACCGCGGACAAAAGCCCCTTGGAATGTGTAA
ATGCTCGATACCACTAGTGTACTCCGCCGCGAACTCGAAGGTGCAAGTGG
TGTTCTGTGAACCCCACGACTGGTTGGTGTCCTGCTTTCGGCACGTTGGG
ATTGATTCAATCCGAGCGAATGCGTGCTTGCCCAAAACTGCTGTTGACGC
TGAAGTGTCGCACGTGCCCCTCACTTTTTGTTCCTTCTCTGCCGCCTGCC
GTGCCAGATCTACTCCGACTCTGCTGAAGCAATTGCCATCTCAAACTCCA
TCTTCAAATCAAACCTCGCGAGCGAGAGGGGCGGTGCAGTGTACGCCATC
GGCTCCGAAACCCTCACTATCACGGACTCCCTTTTCAGGGGCAACGAAGT
TGGGACGGGCGTTGACGCGGACGGCGCAGGAGGCGATGTTTACGCAGGCA
CCAATGTTGAGCTCACGGTCACTGGCACTACGTTCTCGACGTCTGCGGCC
GAGTACGGCGGAGCTGCCATCGAGTGCTGCGGTGCGGTGATCTCCGATAC
TGTCTTCACGGGAGCGGACACTGCCAGCGACGGCGTGAGTCGACGGATGG
GGTTCAAGCGAGAAAGGATCAAAAGAGACTGCTGTCCTAATCATCTTCTG
AACTAGTACATCTAATCTGCCTCTGTTTTGGGCCGAGAGCGAAACTCCTT
TGCCGCTGGCATATCTCAACGGAAACGCTCCTGTTTCCAGCACTTGACAA
TGACATGCCTGCTGCACAACCAAGCCAGGACTCACGTATTGTCTCCAAGC
GGGCATGTTGGCTGATCTGTTCTTCGCATGCCCTGCATGCCTTCCACCGC
CGTCCAAATAGTTGTACAGAAGCATGGTCCGTTCACGATAACTTCGGGTT
CGTACTGCTGTATTTGTTGACACCGAGCACTATTGATTCGCTTCCGTTGT
ACCCATCTCCCCGACGAACCCA

Coding sequence (CDS) from alignment at Scaffold_501:192958..196329+

>EsuBft99_17a-0001 ID=EsuBft99_17a-0001|Name=EsuBft99_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_501:192958..196329+ (Ectocarpus subulatus male Bft15b)
ATGGGGTTCACCAGTAAGACCGCGGGTCTCGCCCTCTTGTTCCTCGGGCT
TGCTGCTAGGCAAGCCTCGGCTGTCACCTCCTGCCTCGACCTCATCACCG
CGGTTGAGGCCATCTCCGATACAGGGACGATAGAGCTCGAGGGCGGCTTT
AACTGCGACACATTCATCACGGTCACTGCTGGCCAGGATGTCACCATCAG
CGGCGCCTACACGATCACCATCGGCGCGGGGTTTGCCGGCAGCACGGACG
AGGACGGCAGCCTGTTCGTGAATGAGGGCATCCTGAAGCTCGACGGCATC
ACGTTCGTTACGGAAACAACGAATGGGAACCGCGCTGTCTGGAACGCCGG
AGAGCTTTCGGTGGAAGGCTGCACCTTCGAACTTTACCCTACCGGAGCAT
TCCTTGCTAGGGGGGGTGTGATCTACTCCGACTCTGCTGAAGCAATTGCC
ATCTCAAACTCCATCTTCAAATCAAACCTCGCGAGCGAGAGGGGCGGTGC
AGTGTACGCCATCGGCTCCGAAACCCTCACTATCACGGACTCCCTTTTCA
GGGGCAACGAAGTTGGGACGGGCGTTGACGCGGACGGCGCAGGAGGCGAT
GTTTACGCAGGCACCAATGTTGAGCTCACGGTCACTGGCACTACGTTCTC
GACGTCTGCGGCCGAGTACGGCGGAGCTGCCATCGAGTGCTGCGGTGCGG
TGATCTCCGATACTGTCTTCACGGGAGCGGACACTGCCAGCGACGGCGTG
AGTCGACGGATGGGGTTCAAGCGAGAAAGGATCAAAAGAGACTGCTGTCC
TAATCATCTTCTGAACTAG