EsuBft99_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_15a-0001
Unique NameEsuBft99_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:177303..180682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft99_15
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length318
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_15aEsuBft99_15aEctocarpus subulatus male Bft15bgeneScaffold_501 177303..180682 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_15a-0001-exonagat-exon-40612Ectocarpus subulatus male Bft15bexonScaffold_501 177303..179279 -
EsuBft99_15a-0001-exonEsuBft99_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 179471..180682 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_15a-0001-exonagat-three_prime_utr-23933Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 177303..179279 -
EsuBft99_15a-0001-exonagat-three_prime_utr-23934Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 179471..180508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_15a-0001-cdsEsuBft99_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 180509..180682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_15a-0001EsuBft99_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 180509..180682 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_15a-0001 ID=EsuBft99_15a-0001|Name=EsuBft99_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3189bp|location=Sequence derived from alignment at Scaffold_501:177303..180682- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCGCTGCTGTATCATGTTATCGTGTGCATCAAAAAAAATCCAGAT
TACCTGTTTTTCCGCTTGCTTCCTCGCGAAGTCCTTCACTACCAGGGTGT
GCTCCTTGGACAGACAGTGGTTCTTGACGGTGGATTTCTTTATCTGGAGC
GACTCCTTGCACGCCTGGCAGTAGAGGCCGCCGCCCAGAAGTTCCAGCCT
CTGGCCCGGAAAGTCCTTGACCCTCTCGTGGGCACCCACCACAGGTTTGA
CAACAATCTTTTTCTGCCACAGCCTCCCACTGCGGCAGCTTTTTGCGCTT
GCCTCCCACCGCGTCTCTCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCGTCTCCCTCCTCACCATCGTCGCGTGGTTTTCTCCGATCTTTGTTT
ACTCTGACTACCCTGGTCTTGGCGATGTGGGCCGCTGGCCGGGGTGCTGC
TGGGGTCGCTGCCGCTGCTTCCACCACCTTGTGGCGTTTGTTGTTGCGCC
TCCTCGGTGGGCCTGGCACCCTTAGGACGGGCGCGTTAGGAACAAAGTTG
AGTATGCTTTGCTGAACCGCACCAAGGCCACCGGAAGAGGGATCTTTCGG
TGGATTCCTCCTCGTATCAGTCGATCCGCGCTGCTGCTGATCCGGATTCG
AAGGCCGCACGACCTCCACCTCGGAGTCCGAGCTGGAACTTGAGCTTGAG
CTTGAGCTTGAGTTAGAGCTAGAGCTAGAGCTGGAGGAGCTGGAGCTGGA
GCTGGAGCTGGAGCTGGAGCTAGAGCTGGAGCTTGAAGAGCTAGAGCGTG
CCATGCCCAGCAGTCCGCGCGCGGGCGTGTGTGCGTGTGGAGCCCACTGT
TGTGTGCGTGTCTTCGGAGAGCGCGCGCGCGCTAGTTGTACTCCTATAAG
ATCGTCTTCATGTCTGTCTTATGTGTATGCACTTATGTCAAGTGTGACAC
TCACATCAGATGTCCAACGATCGAGCATCAGGCGGCAGGCGCGCTTAAGA
TGCCAGCGCACAGCCACTATGCTCAGCAAAGGAGCCGTGTATGCTCCTCG
CACAGACGAATATGCTCCTTTTTGAGCAAAATATGCTCGAGCATCGCTAT
TTTTCAATTATGCTTTTTTTATGCTCCAAATGGCCAATTATGCCAAACGA
AATGCTAGCCTAATGGGCCTAAGACTAGTATTGGTGGAGTTGGGCCGGCA
CTGGTGCGGCAGGTGGTGACGAGCTGATTGGGCTGGCTGGTTGACCCTTC
GGCGCGAGAATTTTTAGACCAAGAACCCTAAGTGCAACGAGGGAGAAAGC
AAGGAACCGACTGGGATGGACAGCAACGAGAGCGTGTACGAAGCGGAGCG
GGTCGAGTTTGGTCGTGCTAGGACTGGCCACAGCGGCAACGGAGCAGCGG
CACCGGAGCAGCGGAACCGGAGCAGGCGGACGGCATCGAACCGTGGCACA
CGGACAAACATCTCTTGTGTTGTCAACTATTTTTCCGTTATTTTTCCTGA
ATATAGATGTTGGGTGTGTGTGATGACGTCACTGGTTTTGTTGAGAGACG
CGGCAGAGATGGCGCGGATAACCCGGGTGCTTTTAATTGTGTACCTGCAT
CGTGGAAGACCCATATGGAACGATTCCTAGTCAGTGTCGATGTTTACACT
GCTGTGCCTAACACAGATGATCTGGATAGATTCGGGTGATTGTCAATTGC
AATGATGGCTTTGGTTGGGTGTTCTTCATTGCATGTCCACGGACTCATTC
TGACAGCACTTCAGACAGCAGCTGCATGCCCCAAGCTTGTGTACCATGCA
CCATGGTGTTATTATTGTACAGACAGCGCTTCAGACAGCAGTACGCTGTA
GTCGACAAACATTCATTTTGGTTAAGTGCGGGACAAGGGGGGTGATGCTG
TTGCTGTAGTCGAATTGTAGTGTGTGGGCGTGTAGTTCAGCTGTGAGCAT
ACAAACGTGCTGCAGGGATTGCAGGTGTACCATCTCGGGCTTGCGTACCC
TTTTCTTGCTAATAGTGTTTGTGTTCTTTACATCTTCTGATGGCTCCAGC
ATTTTTGTGACCACGGACCGAGTCTTTGCTAGATTTTGGGATCAACAACT
GACACGAGTTTAATGTGAAGAAACAACAACAACAACAACAACAACAATCG
TCGTTGTTGCCGTCTTCGGATGGCGCGAGTGCTGCTGACCCCATCGTAGA
AGCCACCCGTTTGTCAGAGCTTCGCGATCAACGCCGACGGGAGGAGTTCG
CCTCCACGGCTTCTACTGACGCTACCGCCGTGGGTGCTGTCCTCAAATTG
CCAGCACCCACAACAGAAGCTTCGGCGTCCACCTCTGTCCTTTCGAGTAC
CCAGCCTTGTATTTTTACAGCCGCTGGTGGTGTGTCCCAAGTTTTCCCGC
CGGAACCACATGTTGCTGATTCCACTTTTCCCCTCACCTCCACTGTCGCT
GACCCTTCTGCTGTTCGGGCAGACATTGGCTTTGACAATACTGGCNGATG
GCGCGAGTGCTGCTGACCCCATCGTAGAAGCCACCCGTTTGTCAGAGCTT
CGCGATCAACGCCGACGGGAGGAGTTCGCCTCCACGGCTTCTACTGACGC
TACCGCCGTGGGTGCTGTCCTCAAATTGCCAGCACCCACAACAGAAGCTT
CGGCGTCCACCTCTGTCCTTTCGAGTACCCAGCCTTGTATTTTTACAGCC
GCTGGTGGTGTGTCCCAAGTTTTCCCGCCGGAACCACATGTTGCTGATTC
CACTTTTCCCCTCACCTCCACTGTCGCTGACCCTTCTGCTGTTCGGGCAG
ACATTGGCTTTGACAATACTGGCTCTGTAGTGCCACGCTTGCCTCATGGC
TCTGTTGTTGGCAGCACACTGCATTTCGATTACACTGTGCCGGCCATTCC
TCCTTTATCGTCGCGATGCAGTCGCACACAAGCCGCCGCTCGTGCACAAG
GGCTTCTTGACCGTCGTGCATCCGTTTCAGTGGCATCTGTGCCTCTGGAT
TTGACTGCTCCACGTGCATCTGTTCCGGTGGTTTCGACTGCCTTTGCGGT
TCCGACCGCTTCCAATGCAACCGTCTCAGTGGTTTCGACCGCACCCGTTG
CATCTGCTCCTGTTGTTTCGACTGCCGTGGCTACTTCCCTTGATTGTGAT
GCACTTATTTCTATAGTTCCGACTACTTCAACTGCAATT
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protein sequence of EsuBft99_15a-0001

>EsuBft99_15 ID=EsuBft99_15|Name=EsuBft99_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MYRCCIMLSCASKKIQITCFSACFLAKSFTTRVCSLDRQWFLTVDFFIWS
DSLHAWQ
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mRNA from alignment at Scaffold_501:177303..180682-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_15a-0001 ID=EsuBft99_15a-0001|Name=EsuBft99_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3380bp|location=Sequence derived from alignment at Scaffold_501:177303..180682- (Ectocarpus subulatus male Bft15b)
ATGTACCGCTGCTGTATCATGTTATCGTGTGCATCAAAAAAAATCCAGAT
TACCTGTTTTTCCGCTTGCTTCCTCGCGAAGTCCTTCACTACCAGGGTGT
GCTCCTTGGACAGACAGTGGTTCTTGACGGTGGATTTCTTTATCTGGAGC
GACTCCTTGCACGCCTGGCAGTAGAGGCCGCCGCCCAGAAGTTCCAGCCT
CTGGCCCGGAAAGTCCTTGACCCTCTCGTGGGCACCCACCACAGGTTTGA
CAACAATCTTTTTCTGCCACAGCCTCCCACTGCGGCAGCTTTTTGCGCTT
GCCTCCCACCGCGTCTCTCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCGTCTCCCTCCTCACCATCGTCGCGTGGTTTTCTCCGATCTTTGTTT
ACTCTGACTACCCTGGTCTTGGCGATGTGGGCCGCTGGCCGGGGTGCTGC
TGGGGTCGCTGCCGCTGCTTCCACCACCTTGTGGCGTTTGTTGTTGCGCC
TCCTCGGTGGGCCTGGCACCCTTAGGACGGGCGCGTTAGGAACAAAGTTG
AGTATGCTTTGCTGAACCGCACCAAGGCCACCGGAAGAGGGATCTTTCGG
TGGATTCCTCCTCGTATCAGTCGATCCGCGCTGCTGCTGATCCGGATTCG
AAGGCCGCACGACCTCCACCTCGGAGTCCGAGCTGGAACTTGAGCTTGAG
CTTGAGCTTGAGTTAGAGCTAGAGCTAGAGCTGGAGGAGCTGGAGCTGGA
GCTGGAGCTGGAGCTGGAGCTAGAGCTGGAGCTTGAAGAGCTAGAGCGTG
CCATGCCCAGCAGTCCGCGCGCGGGCGTGTGTGCGTGTGGAGCCCACTGT
TGTGTGCGTGTCTTCGGAGAGCGCGCGCGCGCTAGTTGTACTCCTATAAG
ATCGTCTTCATGTCTGTCTTATGTGTATGCACTTATGTCAAGTGTGACAC
TCACATCAGATGTCCAACGATCGAGCATCAGGCGGCAGGCGCGCTTAAGA
TGCCAGCGCACAGCCACTATGCTCAGCAAAGGAGCCGTGTATGCTCCTCG
CACAGACGAATATGCTCCTTTTTGAGCAAAATATGCTCGAGCATCGCTAT
TTTTCAATTATGCTTTTTTTATGCTCCAAATGGCCAATTATGCCAAACGA
AATGCTAGCCTAATGGGCCTAAGACTAGTATTGGTGGAGTTGGGCCGGCA
CTGGTGCGGCAGGTACCAAGAAAGGTGTAGATGCGCGGGCCTCCAGGCCG
TCGGTGTAGGCAGCAATGCCCATCTCATCCTTGTGCGTGGAGGCAGACGT
CATCAGAAAGGTGGACGGGCATTATGTACACGGCCCTAGGTTTGCTAGAG
GGAGCTGTACTGTCTCAGTAACCTGGTATTGCCATCAAAGGATGGGGGTA
CAGGTGGTGACGAGCTGATTGGGCTGGCTGGTTGACCCTTCGGCGCGAGA
ATTTTTAGACCAAGAACCCTAAGTGCAACGAGGGAGAAAGCAAGGAACCG
ACTGGGATGGACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTT
TGGTCGTGCTAGGACTGGCCACAGCGGCAACGGAGCAGCGGCACCGGAGC
AGCGGAACCGGAGCAGGCGGACGGCATCGAACCGTGGCACACGGACAAAC
ATCTCTTGTGTTGTCAACTATTTTTCCGTTATTTTTCCTGAATATAGATG
TTGGGTGTGTGTGATGACGTCACTGGTTTTGTTGAGAGACGCGGCAGAGA
TGGCGCGGATAACCCGGGTGCTTTTAATTGTGTACCTGCATCGTGGAAGA
CCCATATGGAACGATTCCTAGTCAGTGTCGATGTTTACACTGCTGTGCCT
AACACAGATGATCTGGATAGATTCGGGTGATTGTCAATTGCAATGATGGC
TTTGGTTGGGTGTTCTTCATTGCATGTCCACGGACTCATTCTGACAGCAC
TTCAGACAGCAGCTGCATGCCCCAAGCTTGTGTACCATGCACCATGGTGT
TATTATTGTACAGACAGCGCTTCAGACAGCAGTACGCTGTAGTCGACAAA
CATTCATTTTGGTTAAGTGCGGGACAAGGGGGGTGATGCTGTTGCTGTAG
TCGAATTGTAGTGTGTGGGCGTGTAGTTCAGCTGTGAGCATACAAACGTG
CTGCAGGGATTGCAGGTGTACCATCTCGGGCTTGCGTACCCTTTTCTTGC
TAATAGTGTTTGTGTTCTTTACATCTTCTGATGGCTCCAGCATTTTTGTG
ACCACGGACCGAGTCTTTGCTAGATTTTGGGATCAACAACTGACACGAGT
TTAATGTGAAGAAACAACAACAACAACAACAACAACAATCGTCGTTGTTG
CCGTCTTCGGATGGCGCGAGTGCTGCTGACCCCATCGTAGAAGCCACCCG
TTTGTCAGAGCTTCGCGATCAACGCCGACGGGAGGAGTTCGCCTCCACGG
CTTCTACTGACGCTACCGCCGTGGGTGCTGTCCTCAAATTGCCAGCACCC
ACAACAGAAGCTTCGGCGTCCACCTCTGTCCTTTCGAGTACCCAGCCTTG
TATTTTTACAGCCGCTGGTGGTGTGTCCCAAGTTTTCCCGCCGGAACCAC
ATGTTGCTGATTCCACTTTTCCCCTCACCTCCACTGTCGCTGACCCTTCT
GCTGTTCGGGCAGACATTGGCTTTGACAATACTGGCNGATGGCGCGAGTG
CTGCTGACCCCATCGTAGAAGCCACCCGTTTGTCAGAGCTTCGCGATCAA
CGCCGACGGGAGGAGTTCGCCTCCACGGCTTCTACTGACGCTACCGCCGT
GGGTGCTGTCCTCAAATTGCCAGCACCCACAACAGAAGCTTCGGCGTCCA
CCTCTGTCCTTTCGAGTACCCAGCCTTGTATTTTTACAGCCGCTGGTGGT
GTGTCCCAAGTTTTCCCGCCGGAACCACATGTTGCTGATTCCACTTTTCC
CCTCACCTCCACTGTCGCTGACCCTTCTGCTGTTCGGGCAGACATTGGCT
TTGACAATACTGGCTCTGTAGTGCCACGCTTGCCTCATGGCTCTGTTGTT
GGCAGCACACTGCATTTCGATTACACTGTGCCGGCCATTCCTCCTTTATC
GTCGCGATGCAGTCGCACACAAGCCGCCGCTCGTGCACAAGGGCTTCTTG
ACCGTCGTGCATCCGTTTCAGTGGCATCTGTGCCTCTGGATTTGACTGCT
CCACGTGCATCTGTTCCGGTGGTTTCGACTGCCTTTGCGGTTCCGACCGC
TTCCAATGCAACCGTCTCAGTGGTTTCGACCGCACCCGTTGCATCTGCTC
CTGTTGTTTCGACTGCCGTGGCTACTTCCCTTGATTGTGATGCACTTATT
TCTATAGTTCCGACTACTTCAACTGCAATT
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Coding sequence (CDS) from alignment at Scaffold_501:177303..180682-

>EsuBft99_15a-0001 ID=EsuBft99_15a-0001|Name=EsuBft99_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_501:177303..180682- (Ectocarpus subulatus male Bft15b)
ATGTACCGCTGCTGTATCATGTTATCGTGTGCATCAAAAAAAATCCAGAT
TACCTGTTTTTCCGCTTGCTTCCTCGCGAAGTCCTTCACTACCAGGGTGT
GCTCCTTGGACAGACAGTGGTTCTTGACGGTGGATTTCTTTATCTGGAGC
GACTCCTTGCACGCCTGGCAGTAG
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