EsuBft99_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_14a-0001
Unique NameEsuBft99_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:173931..176739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft99_14
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length221
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_14aEsuBft99_14aEctocarpus subulatus male Bft15bgeneScaffold_501 173931..176739 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_14a-0001-exonagat-exon-40610Ectocarpus subulatus male Bft15bexonScaffold_501 173931..174951 -
EsuBft99_14a-0001-exonEsuBft99_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 175211..175387 -
EsuBft99_14a-0001-exonagat-exon-40611Ectocarpus subulatus male Bft15bexonScaffold_501 175724..176739 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_14a-0001-exonagat-three_prime_utr-23932Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 173931..174809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_14a-0001-cdsEsuBft99_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 174810..174951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_14a-0001EsuBft99_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 174810..176739 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_14a-0001 ID=EsuBft99_14a-0001|Name=EsuBft99_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2214bp|location=Sequence derived from alignment at Scaffold_501:173931..176739- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCACCCAGCTTGTGGCCAACCCTGAGGCGGCCTCCCTCGCTGG
TGGAGCCGTCTCCGCCTCTGCGATCCGGGCAACGACCGCGGGCGCCGGCG
AGAGGTCTTCGACTACCCCCCGCCCGGTGTCGTCGGTCCCCCTAGTCCCG
CTTCCCACAGCTTCGACGGCCCGAGCTGCTTCGGCGGCCCCCTCTGCTTC
GGTGGCCCCCGCTGCTCCGGCAGCCCCCCCTGCTTCGGCAGCCCCCGCTG
TTTCGGCAGCCCCCGCCGCTTCGGCGGCACCCGCAGCTTCGGCGGCACCC
CCAACCTCGTCGGCACCCCCGCAGCGCCCTCGTTGGGTTTGTTCAATCAA
CCCTGTGGGACTGCATGACCGACGACCAGCGGCTGTTGGCCCTGTCCCCC
CGGGTTCGCCAGGCCTCGACCGCGAAGCGGTTCTTCGGGACGGCAACGCT
CGGCTTGACGCCGAGTTCACCAAGGCGACCGCGGCACGACACGCACAAAT
CGCAATGTACCGTGCGCGCCGGGCCACCAACGCCGACGCCATCCTCGAGT
ACGCCCACCTTAAGCAAGCGCAAGAACGAGAGGAGGCCCTGCTGGCAGCC
CAGCTCGTCGAGGATCGCCGCCACCAGCATGCCTTGGTCGCTGAACAGGC
TCGCGCTGACCAACAGCGCGAACACGATCTTCGGGTCCGGGCGGGGCGCT
CCGTGCCGGGACCGGCCCCTGCTGCTGCTCCTGCCCCGTCGGCGCCAAAG
GCTCGGACGTACGCTGCTGCCGCCTCCAGCCCTGTGACGCGGTCTTTATC
ACGGTCGCGCTTCGTCACCTTCGAGGCCGGGGACACCAGGTTTGCCCAAG
CCAGGTTGTCGGACGTTGTAAAATACGCCCAGGTCAGCTACCAGGTCGAG
GATCGCAAGGCTGTCATGGACTTGGCGGCTGGCGTGTCCACCGCCCTGCC
GTTGGCTGCCTCAATACAGGACGCCGCGATGCGGCCAACGGGTCTCGGCC
CGACCTCCACGATGTGGTTTGCCCAAGCCAGGTTGTCGGACGTTGTAAAA
TACGCCCAGGTCAGCTACCAGGTCGAGGATCGCAAGGCTGTCATGGACTT
GGCGGCTGGCGTGTCCACCGCCCTGCCGTTGGCTGCCTCAATACAGGACG
CCGCGATGCGGCCAACGGGTCTCGGCCCGACCTCCACGATGTGGCCAAGC
GCCACACGAGCGGGACTCGTGGCAAGGGAGGCGGATCGGGCTCTGGTTCA
GACAGGAGTCTCACCCGGAAGCACGGTGCTCGGAAGGGTCCTTCTTCCAG
GCAAGTCGTCTCGTCCCTTATGGATGCTACTTTGAGTGATCGTTTTCTTT
TACATGATGTTTTTTCACAGGCTTCGCCCCCCCCCCTTGACTTCGGTTGT
TGGTACGGTTTCGGCCCCCCCTCTTTCCTCGGACTCAGGGCGTTTGCGCC
GTGTTGCGTTTTCGGACCTTCACCCGCCTTTAGGCTCCCCTGTCTCTTCG
GAATCACTTGCACCTGCTGTCCGTTCTGCCGCGTTCAATGCTGTAGACTC
CGGACATGTACGTCGCGTTGAGTATTCGAACTCACCACCGGTTTCGACCA
CCCCTGTTTCTTTGGAAACCTCTGCACCCCGTAGCCTTTCTACCGCTCGC
CATGCCGTAGATCCACGAATAATGCAGAACTCTGGGTTTTCGAACCTCAG
CCCCCCTTCGGCGTTTGATCCACCAGTGCCTGGTGTTTTGCGTAGCATGT
TGTCTTCAGACCATGCCCCTACAGCTGCTTCGGTAGCCGTCGCCGCACCC
CCCGCTGTCTCCGATGATCGTGCCTTGCCACCTTCTTCTAACACAGCACA
CACTCGTCAAGCATCGATCGATGCGACTGATGCAGCTGCTCGTAATGCTC
ATGTAGCTACCGTTCAACGAGCGTACATCATCCTCAACTTGAAAAAGTTG
AGAATGTCGCTACCATGCCCTTCCCCGCTACTCTGTTGCCGGGAGATGGC
TATCAGCAGCTTATTCGCACAACAAGAACGGCTTCGTCCGATATTTTGCT
GTTGTGTGATGAGCAGAGTGAAGGTTTGACAGGCGCCAATTTTGTGCGTG
GATGGGAACGTCCTCTCGAAAAAAACTCTTGAGTGCGATCACCCCCGACA
AGCCCTCTACCGCCGATCTCGTCCTTGCCGTTACTTATTTCTTTCAGCAC
GTGAAACGGAGCTT
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protein sequence of EsuBft99_14a-0001

>EsuBft99_14 ID=EsuBft99_14|Name=EsuBft99_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=444bp
MVATQLVANPEAASLAGGAVSASAIRATTAGAGERSSTTPRPVSSVPLVP
LPTASTARAASAAPSASVAPAAPAAPPASAAPAVSAAPAASAAPAASAAP
PTSSAPPQRPRWVCSINPVGLHDRRPAAVGPVPPGSPGLDREAVLRDGNA
RLDAEFTKATAARHAQIAMYRARRATNADAILEYAHLKQAQEREEALLAA
QLVEDRRHQHALVAEQARADQQREHDLRVRAGRSVPGPAPAAAPAPSAPK
ARTYAAAASSPVTRSLSRSRFVTFEAGDTRFAQARLSDVVKYAQVSYQVE
DRKAVMDLAAGVSTALPLAASIQDAAMRPTGLGPTSTMWFAQARLSDVVK
YAQVSYQVEDRKAVMDLAAGVSTALPLAASIQDAAMRPTGLGPTSTMWPS
ATRAGLVAREADRALVQTGVSPGSTVLGRVLLPGKSSRPLWMLL
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mRNA from alignment at Scaffold_501:173931..176739-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_14a-0001 ID=EsuBft99_14a-0001|Name=EsuBft99_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2809bp|location=Sequence derived from alignment at Scaffold_501:173931..176739- (Ectocarpus subulatus male Bft15b)
ATGGTCGCCACCCAGCTTGTGGCCAACCCTGAGGCGGCCTCCCTCGCTGG
TGGAGCCGTCTCCGCCTCTGCGATCCGGGCAACGACCGCGGGCGCCGGCG
AGAGGTCTTCGACTACCCCCCGCCCGGTGTCGTCGGTCCCCCTAGTCCCG
CTTCCCACAGCTTCGACGGCCCGAGCTGCTTCGGCGGCCCCCTCTGCTTC
GGTGGCCCCCGCTGCTCCGGCAGCCCCCCCTGCTTCGGCAGCCCCCGCTG
TTTCGGCAGCCCCCGCCGCTTCGGCGGCACCCGCAGCTTCGGCGGCACCC
CCAACCTCGTCGGCACCCCCGCAGCGCCCTCGTTGGGTTTGTTCAATCAA
CCCTGTGGGACTGCATGACCGACGACCAGCGGCTGTTGGCCCTGTCCCCC
CGGGTTCGCCAGGCCTCGACCGCGAAGCGGTTCTTCGGGACGGCAACGCT
CGGCTTGACGCCGAGTTCACCAAGGCGACCGCGGCACGACACGCACAAAT
CGCAATGTACCGTGCGCGCCGGGCCACCAACGCCGACGCCATCCTCGAGT
ACGCCCACCTTAAGCAAGCGCAAGAACGAGAGGAGGCCCTGCTGGCAGCC
CAGCTCGTCGAGGATCGCCGCCACCAGCATGCCTTGGTCGCTGAACAGGC
TCGCGCTGACCAACAGCGCGAACACGATCTTCGGGTCCGGGCGGGGCGCT
CCGTGCCGGGACCGGCCCCTGCTGCTGCTCCTGCCCCGTCGGCGCCAAAG
GCTCGGACGTACGCTGCTGCCGCCTCCAGCCCTGTGACGCGGTCTTTATC
ACGGTCGCGCTTCGTCACCTTCGAGGCCGGGGACACCAGGTTTGCCCAAG
CCAGGTTGTCGGACGTTGTAAAATACGCCCAGGTCAGCTACCAGGTCGAG
GATCGCAAGGCTGTCATGGACTTGGCGGCTGGCGTGTCCACCGCCCTGCC
GTTGGCTGCCTCAATACAGGACGCCGCGATGCGGCCAACGGGTCTCGGCC
CGACCTCCACGATGTGGTGAGCTGCCTCCTCGTGGCAATGCGGGCGGCCA
CCATGAACGCATCGTCTCCGGTGGTGTGGCCCCCCCTGCGCCGTGGCGAT
TCCGGCATCTTCGGCGTTCCAGCAGCCCAAGGCCNAAGAGGATGCCTTGG
TCGCTGAACAGGCTCGCGCTGACCAACAGCGCGAACACGATCTTCGGGTC
CGGGCGGGGCGCTCCGTGCCGGGACCGGCCCCTGCTGCTGCTCCTGCCCC
GTCGGCGCCAAAGGCTCGGACGTACGCTGCTGCCGCCTCCAGCCCTGTGA
CGCGGTCTTTATCACGGTCGCGCTTCGTCACCTTCGAGGCCGGGGACACC
AGGTTTGCCCAAGCCAGGTTGTCGGACGTTGTAAAATACGCCCAGGTCAG
CTACCAGGTCGAGGATCGCAAGGCTGTCATGGACTTGGCGGCTGGCGTGT
CCACCGCCCTGCCGTTGGCTGCCTCAATACAGGACGCCGCGATGCGGCCA
ACGGGTCTCGGCCCGACCTCCACGATGTGGTGAGCTGCCTCCTCGTGGCA
ATGCGGGCGGCCACCATGAACGCATCGTCTCCGGTGGTGTGGCCCCCCCT
GCGCCGTGGCGATTCCGGCATCTTCGGCGTTCCAGCAGCCCAAGGCCGGC
CGCGTCAAGGCCAAGCCGCTCCAGTCCATCGTGCGAGAGAGTAGCTCGGG
CGAGGACTCGGGCTGGAGTTCCGCGGAAGTGTCTCGCCGCCCCCCGGAGC
CATCTTCGTTCGCGGGCGATGGCCGGGCACGGCAGCAGGCCAAGCGCCAC
ACGAGCGGGACTCGTGGCAAGGGAGGCGGATCGGGCTCTGGTTCAGACAG
GAGTCTCACCCGGAAGCACGGTGCTCGGAAGGGTCCTTCTTCCAGGCAAG
TCGTCTCGTCCCTTATGGATGCTACTTTGAGTGATCGTTTTCTTTTACAT
GATGTTTTTTCACAGGCTTCGCCCCCCCCCCTTGACTTCGGTTGTTGGTA
CGGTTTCGGCCCCCCCTCTTTCCTCGGACTCAGGGCGTTTGCGCCGTGTT
GCGTTTTCGGACCTTCACCCGCCTTTAGGCTCCCCTGTCTCTTCGGAATC
ACTTGCACCTGCTGTCCGTTCTGCCGCGTTCAATGCTGTAGACTCCGGAC
ATGTACGTCGCGTTGAGTATTCGAACTCACCACCGGTTTCGACCACCCCT
GTTTCTTTGGAAACCTCTGCACCCCGTAGCCTTTCTACCGCTCGCCATGC
CGTAGATCCACGAATAATGCAGAACTCTGGGTTTTCGAACCTCAGCCCCC
CTTCGGCGTTTGATCCACCAGTGCCTGGTGTTTTGCGTAGCATGTTGTCT
TCAGACCATGCCCCTACAGCTGCTTCGGTAGCCGTCGCCGCACCCCCCGC
TGTCTCCGATGATCGTGCCTTGCCACCTTCTTCTAACACAGCACACACTC
GTCAAGCATCGATCGATGCGACTGATGCAGCTGCTCGTAATGCTCATGTA
GCTACCGTTCAACGAGCGTACATCATCCTCAACTTGAAAAAGTTGAGAAT
GTCGCTACCATGCCCTTCCCCGCTACTCTGTTGCCGGGAGATGGCTATCA
GCAGCTTATTCGCACAACAAGAACGGCTTCGTCCGATATTTTGCTGTTGT
GTGATGAGCAGAGTGAAGGTTTGACAGGCGCCAATTTTGTGCGTGGATGG
GAACGTCCTCTCGAAAAAAACTCTTGAGTGCGATCACCCCCGACAAGCCC
TCTACCGCCGATCTCGTCCTTGCCGTTACTTATTTCTTTCAGCACGTGAA
ACGGAGCTT
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Coding sequence (CDS) from alignment at Scaffold_501:173931..176739-

>EsuBft99_14a-0001 ID=EsuBft99_14a-0001|Name=EsuBft99_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1335bp|location=Sequence derived from alignment at Scaffold_501:173931..176739- (Ectocarpus subulatus male Bft15b)
ATGGTCGCCACCCAGCTTGTGGCCAACCCTGAGGCGGCCTCCCTCGCTGG
TGGAGCCGTCTCCGCCTCTGCGATCCGGGCAACGACCGCGGGCGCCGGCG
AGAGGTCTTCGACTACCCCCCGCCCGGTGTCGTCGGTCCCCCTAGTCCCG
CTTCCCACAGCTTCGACGGCCCGAGCTGCTTCGGCGGCCCCCTCTGCTTC
GGTGGCCCCCGCTGCTCCGGCAGCCCCCCCTGCTTCGGCAGCCCCCGCTG
TTTCGGCAGCCCCCGCCGCTTCGGCGGCACCCGCAGCTTCGGCGGCACCC
CCAACCTCGTCGGCACCCCCGCAGCGCCCTCGTTGGGTTTGTTCAATCAA
CCCTGTGGGACTGCATGACCGACGACCAGCGGCTGTTGGCCCTGTCCCCC
CGGGTTCGCCAGGCCTCGACCGCGAAGCGGTTCTTCGGGACGGCAACGCT
CGGCTTGACGCCGAGTTCACCAAGGCGACCGCGGCACGACACGCACAAAT
CGCAATGTACCGTGCGCGCCGGGCCACCAACGCCGACGCCATCCTCGAGT
ACGCCCACCTTAAGCAAGCGCAAGAACGAGAGGAGGCCCTGCTGGCAGCC
CAGCTCGTCGAGGATCGCCGCCACCAGCATGCCTTGGTCGCTGAACAGGC
TCGCGCTGACCAACAGCGCGAACACGATCTTCGGGTCCGGGCGGGGCGCT
CCGTGCCGGGACCGGCCCCTGCTGCTGCTCCTGCCCCGTCGGCGCCAAAG
GCTCGGACGTACGCTGCTGCCGCCTCCAGCCCTGTGACGCGGTCTTTATC
ACGGTCGCGCTTCGTCACCTTCGAGGCCGGGGACACCAGGTTTGCCCAAG
CCAGGTTGTCGGACGTTGTAAAATACGCCCAGGTCAGCTACCAGGTCGAG
GATCGCAAGGCTGTCATGGACTTGGCGGCTGGCGTGTCCACCGCCCTGCC
GTTGGCTGCCTCAATACAGGACGCCGCGATGCGGCCAACGGGTCTCGGCC
CGACCTCCACGATGTGGTTTGCCCAAGCCAGGTTGTCGGACGTTGTAAAA
TACGCCCAGGTCAGCTACCAGGTCGAGGATCGCAAGGCTGTCATGGACTT
GGCGGCTGGCGTGTCCACCGCCCTGCCGTTGGCTGCCTCAATACAGGACG
CCGCGATGCGGCCAACGGGTCTCGGCCCGACCTCCACGATGTGGCCAAGC
GCCACACGAGCGGGACTCGTGGCAAGGGAGGCGGATCGGGCTCTGGTTCA
GACAGGAGTCTCACCCGGAAGCACGGTGCTCGGAAGGGTCCTTCTTCCAG
GCAAGTCGTCTCGTCCCTTATGGATGCTACTTTGA
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