EsuBft99_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft99_12a-0001
Unique Name	EsuBft99_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_501	contig	Scaffold_501:156531..159931 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6087.XP_004210598.1
ProteomeId	EsuBft99_12
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	340
Hectar predicted targeting category	other localisation
Evalue	0.000191
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,39MAT@33154\|Opisthokonta,3CNXU@33208\|Metazoa
Date last modified	2016-06-15
Date creation	2016-06-15
Description	DDE superfamily endonuclease
COG category	BD

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft99_12a	EsuBft99_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_501 156531..159931 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_12a-0001-exon	EsuBft99_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_501 156531..159931 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_12a-0001-exon	agat-three_prime_utr-23930	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_501 156531..159709 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_12a-0001-cds	EsuBft99_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_501 159710..159910 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_12a-0001-exon	agat-five_prime_utr-15605	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_501 159911..159931 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft99_12a-0001	EsuBft99_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_501 159710..159910 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_501:156531..159931-
coding sequence from alignment at Scaffold_501:156531..159931-

spliced messenger RNA

>EsuBft99_12a-0001 ID=EsuBft99_12a-0001|Name=EsuBft99_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3401bp|location=Sequence derived from alignment at Scaffold_501:156531..159931- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGCAGAAGGTGGTTGGTTCGATGCGCTCCAACTCGCGAGATAGCACCAC
CGTGGTCGCTACCATCAGCGCTGATGGTCACACCTGGGCACCAACCAATA
TCTTCAAAGGGCAAAGACTTCAGGTCGATTGGTTTGTAGAGCGAAACGGC
CCGGAGGGTGCGAGGTACACCTATACGGATTCTTCGTTCATGGAGGGAGA
CGTATTCATCGCCATTGAATAGTCTACTTGAAGGATTTCCACAAGCAGCT
CGGCGACCGAGGGTTGCTCGACGGAAACCCCACATACTCTTGCTCGATGG
ACATGCATCACACGTGAGCGTGGAGGTAATCAGGCTGGCCATGAATCTCA
AAATCATCTTGTTCCAGCTACCCTCCCACACGTCGCACATCACCCAGCCC
TTGGATGCCGTCACCTTCGGACGCTTTAAGAAATCGGTGACCAGAGTTTT
GGCGTCCTTCTACCACAGCTCCGGCGGGTTGTTACCGCTGAAACGCGACA
TGCCCGGCGTGATCGCGGATGCTTGGAAATTGAGCTTTACACCGGAGATA
AATAAATCATCATCCGCTGGGGCGGGCTTGTGGCCTGTGAACAAGGAGCG
GGCGCTGGGCCGGCTGAAGGGCACAGCGAAGAAGAAAGAGCGGCGAGACG
AGCGCCCACCCCTACAGGATGTCCCCATCGCCGCCCTCAACGAGCAGCTG
GAAAAAGACATCGGAGAAAGGGCCCTCAGGGTGCTGAGGGGCAAGGGCAC
ACCGTCACGGGGATCCGAGTAGGCACGGTGTTACTCGGTGGCCTCTTGAC
TCAAAGGAAACGCGCGAAGGAGATGGCGACCTCGCGGGGATCGCTTGGCC
TTCCCGGCGGAGGCAACATTACCGCGCCTGAGTTCCTGGACGCTGTTGCA
GAAAGAGAACGCGCAGACAAAGCGGAGAGCGACGCGAAGGCTGCGAGGGC
GAAAGTCCGCGAAGAGAAGAGGGCTGGAGGCGGGGGCCGCGGTGTTGGTC
GTGGAGACGGGGTGGGAGCGCGTGGCCGGGGGGGGGGGCGCGGCCGGGTG
GCTGGAGCAGAAGGGACCNGCGGGGGGAGGGAGGCGGGGGCCGCGGTGTT
GGTCGTGGAGACGGGGTGGGAGCGCGTGGCCGGGGGGGGGGGCGCGACCG
GGTGGAGGGGCGCGGCCGGGTGGCTGAAGCAGAAGGGACGACTTTGTCGG
AATGTCAGCCAGCGCCCTCCGTGTGCAGGGTTGGACGACAACGGACGCCG
ACACCCGTTGTCGACGTGTAGCCGTATGGATATCTCTCACGTGTACGGAC
AGGTTCGGATTTGAATCGAACACGCCCAAATGGTCGTGAGGTTGCACCCG
GAGTCGATATGCACCCTGTATAACGTCGCATGTGGTTCGTAGGCTATGCG
ACGGTAATTTACGGGCGTGCCAGCACCGGGGAGGCAGGATGCACAGGTTT
TGAACCCAACCCGGGGATGTCATCATTTTGTCCCCGGGTGACCTGTGTGT
GTGTGTATGTTTTTTTTTTGCCATCGATGTTTTTCACTCATGCTTACAGG
TTCCCTCAGAAGCACCCGTCGCGGGGGTGCAAAGGTGTTGAAACTACGGT
TGTTTTCGGCGTTAATTCTTACCGTAGCGGCAAAAGCCTAAAATCGGGGG
AAAGTATCCTTATGTGACCTGTAATATATCATCAGGTGTGCTCCAATGGG
CAAGGAATTGTGCGTACAGTCGAAACATACCCTGTAGAACGTCGTGTGGT
TCGTTCCCTATTTGATGGTGACATTCGTGCGTTCCTGTACCAGGGGGGGG
AGGGATGCACAGGTTGTGACCGAAAACCCGGGGACGCGGTGGTTCTGTCC
CCAGGGTGGCTTTTTTTATTTTCTGAACATGTTTCTCACTCATGTTTAAA
GATCCCCTCCAAAGGTTGTGTCGTAGGGATGAACGAGTCNGAATTGTGCG
TACAGTCGAAACATACCCTGTAGAACGTCGTGTGGTTCGTTCCCTATTTG
ATGGTGACATTCGTGCGTTCCTGTACCAGGGGGGGGAGGGATGCACAGGT
TGTGACCGAAAACCCGGGGACGCGGTGGTTCTGTCCCCAGGGTGGCTTTT
TTTATTTTCTGAACATGTTTCTCACTCATGTTTAAAGATCCCCTCCAAAG
GTTGTGTCGTAGGGATGAACGAGTCTTCCTCAATGGTGGATACAGTTTGG
CGGTGTTCGGCGTGAATTCTTACCGTTAGCGGCATGCTAAACCAGGAAAA
AGTACCCATATTTGACCAAGTACCATTTGACGTAGACAACTCATTTTGCC
GTTATTTTTTTTTCTCGAGTCGTCTACTGACTGGAATAACACATTTATGC
ACCAAACTGGTTGTTATGCCTCGTTTCGAACGCACACAGCACGCAAAACA
GGTCATGGAGGGAAAAAAACCATCCCTACCCATGGTGTCGAAAACCCGGG
GATACGTCACTTTCATCCCCGGATGGATGTCGATCATTTTTTTGTCTTAC
TTTTTCTTCATTCCTTTTGTATTTTACGCATGCCCACCAAATCTTGGGTC
TTAAAACGCTTTCAAACGTGTGAAATCAACCAATGATGAAAGTGGCCTTT
AATACCCCCAGGGGTAATTTACTCTCAAAATGGCGCCTGCAGCTCAGGCC
TGCAGCTCCAGCCCTACCTGGTCACTGCTGTTGACGTTTATTTTCTTTTT
TTTAGGTAGGCGGGGGGTGATCTTGCCTATCGCTCGATACCACATTGTCA
TTGAAATTCGATTTCCTGCTCAAGAACGAGCTCTTGGCACAGGGGGTGGC
TTAAGTGGCCTTTAATACCCGCCTCTACTCTACCATCATCGAGGGTTTTC
AAATGGGTCCAGCGGGTGCGGTGTCTTCATGTCACCTACGGCATTAATGC
TGTAGATTAGAGTCGCAGAAAATACCTAGACTATTCCAGTAATAGCAGCC
TTCGGCCGCAGAATTAAACTCCCTGGAGAACGTCCCACGCCTCGCATATG
GCCGCACAGACGAGTGGTAAAGGAGACTAAAATATCAATCATGCTTGTTT
TTCGAGTGTTTGCCGTCTCACCAGCAAATCGTCAAATCTTAATCCTATCA
GGATGTCAGACACACAATGCCACGCCTCGTATCTGAACATGACAAGCTAG
CCTACTCCTAATTGCACCAATCAACTCCGTGTATGTTTCAGCTGCGTACC
AAACTCTGTCGAAGTCATGGGCGGCAGCAAGGGCTGCAGCGTTGACAATC
GGTCTTTCTTCGGAACGGCAGCGTTGTACTTTAGCCTTACAACTCTTGTA
GTCAGCTACAGATGCACGACTTCGGTGCATGCCTGGGTGAGAGACACGTA
ATTTACACGCGGTGGGCACGCTCCTGCCTAACATATATGACACAATATAA
C

protein sequence of EsuBft99_12a-0001

>EsuBft99_12 ID=EsuBft99_12|Name=EsuBft99_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=66bp
MRSNSRDSTTVVATISADGHTWAPTNIFKGQRLQVDWFVERNGPEGARYT
YTDSSFMEGDVFIAIE

mRNA from alignment at Scaffold_501:156531..159931-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft99_12a-0001 ID=EsuBft99_12a-0001|Name=EsuBft99_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3401bp|location=Sequence derived from alignment at Scaffold_501:156531..159931- (Ectocarpus subulatus male Bft15b)
GGGCAGAAGGTGGTTGGTTCGATGCGCTCCAACTCGCGAGATAGCACCAC
CGTGGTCGCTACCATCAGCGCTGATGGTCACACCTGGGCACCAACCAATA
TCTTCAAAGGGCAAAGACTTCAGGTCGATTGGTTTGTAGAGCGAAACGGC
CCGGAGGGTGCGAGGTACACCTATACGGATTCTTCGTTCATGGAGGGAGA
CGTATTCATCGCCATTGAATAGTCTACTTGAAGGATTTCCACAAGCAGCT
CGGCGACCGAGGGTTGCTCGACGGAAACCCCACATACTCTTGCTCGATGG
ACATGCATCACACGTGAGCGTGGAGGTAATCAGGCTGGCCATGAATCTCA
AAATCATCTTGTTCCAGCTACCCTCCCACACGTCGCACATCACCCAGCCC
TTGGATGCCGTCACCTTCGGACGCTTTAAGAAATCGGTGACCAGAGTTTT
GGCGTCCTTCTACCACAGCTCCGGCGGGTTGTTACCGCTGAAACGCGACA
TGCCCGGCGTGATCGCGGATGCTTGGAAATTGAGCTTTACACCGGAGATA
AATAAATCATCATCCGCTGGGGCGGGCTTGTGGCCTGTGAACAAGGAGCG
GGCGCTGGGCCGGCTGAAGGGCACAGCGAAGAAGAAAGAGCGGCGAGACG
AGCGCCCACCCCTACAGGATGTCCCCATCGCCGCCCTCAACGAGCAGCTG
GAAAAAGACATCGGAGAAAGGGCCCTCAGGGTGCTGAGGGGCAAGGGCAC
ACCGTCACGGGGATCCGAGTAGGCACGGTGTTACTCGGTGGCCTCTTGAC
TCAAAGGAAACGCGCGAAGGAGATGGCGACCTCGCGGGGATCGCTTGGCC
TTCCCGGCGGAGGCAACATTACCGCGCCTGAGTTCCTGGACGCTGTTGCA
GAAAGAGAACGCGCAGACAAAGCGGAGAGCGACGCGAAGGCTGCGAGGGC
GAAAGTCCGCGAAGAGAAGAGGGCTGGAGGCGGGGGCCGCGGTGTTGGTC
GTGGAGACGGGGTGGGAGCGCGTGGCCGGGGGGGGGGGCGCGGCCGGGTG
GCTGGAGCAGAAGGGACCNGCGGGGGGAGGGAGGCGGGGGCCGCGGTGTT
GGTCGTGGAGACGGGGTGGGAGCGCGTGGCCGGGGGGGGGGGCGCGACCG
GGTGGAGGGGCGCGGCCGGGTGGCTGAAGCAGAAGGGACGACTTTGTCGG
AATGTCAGCCAGCGCCCTCCGTGTGCAGGGTTGGACGACAACGGACGCCG
ACACCCGTTGTCGACGTGTAGCCGTATGGATATCTCTCACGTGTACGGAC
AGGTTCGGATTTGAATCGAACACGCCCAAATGGTCGTGAGGTTGCACCCG
GAGTCGATATGCACCCTGTATAACGTCGCATGTGGTTCGTAGGCTATGCG
ACGGTAATTTACGGGCGTGCCAGCACCGGGGAGGCAGGATGCACAGGTTT
TGAACCCAACCCGGGGATGTCATCATTTTGTCCCCGGGTGACCTGTGTGT
GTGTGTATGTTTTTTTTTTGCCATCGATGTTTTTCACTCATGCTTACAGG
TTCCCTCAGAAGCACCCGTCGCGGGGGTGCAAAGGTGTTGAAACTACGGT
TGTTTTCGGCGTTAATTCTTACCGTAGCGGCAAAAGCCTAAAATCGGGGG
AAAGTATCCTTATGTGACCTGTAATATATCATCAGGTGTGCTCCAATGGG
CAAGGAATTGTGCGTACAGTCGAAACATACCCTGTAGAACGTCGTGTGGT
TCGTTCCCTATTTGATGGTGACATTCGTGCGTTCCTGTACCAGGGGGGGG
AGGGATGCACAGGTTGTGACCGAAAACCCGGGGACGCGGTGGTTCTGTCC
CCAGGGTGGCTTTTTTTATTTTCTGAACATGTTTCTCACTCATGTTTAAA
GATCCCCTCCAAAGGTTGTGTCGTAGGGATGAACGAGTCNGAATTGTGCG
TACAGTCGAAACATACCCTGTAGAACGTCGTGTGGTTCGTTCCCTATTTG
ATGGTGACATTCGTGCGTTCCTGTACCAGGGGGGGGAGGGATGCACAGGT
TGTGACCGAAAACCCGGGGACGCGGTGGTTCTGTCCCCAGGGTGGCTTTT
TTTATTTTCTGAACATGTTTCTCACTCATGTTTAAAGATCCCCTCCAAAG
GTTGTGTCGTAGGGATGAACGAGTCTTCCTCAATGGTGGATACAGTTTGG
CGGTGTTCGGCGTGAATTCTTACCGTTAGCGGCATGCTAAACCAGGAAAA
AGTACCCATATTTGACCAAGTACCATTTGACGTAGACAACTCATTTTGCC
GTTATTTTTTTTTCTCGAGTCGTCTACTGACTGGAATAACACATTTATGC
ACCAAACTGGTTGTTATGCCTCGTTTCGAACGCACACAGCACGCAAAACA
GGTCATGGAGGGAAAAAAACCATCCCTACCCATGGTGTCGAAAACCCGGG
GATACGTCACTTTCATCCCCGGATGGATGTCGATCATTTTTTTGTCTTAC
TTTTTCTTCATTCCTTTTGTATTTTACGCATGCCCACCAAATCTTGGGTC
TTAAAACGCTTTCAAACGTGTGAAATCAACCAATGATGAAAGTGGCCTTT
AATACCCCCAGGGGTAATTTACTCTCAAAATGGCGCCTGCAGCTCAGGCC
TGCAGCTCCAGCCCTACCTGGTCACTGCTGTTGACGTTTATTTTCTTTTT
TTTAGGTAGGCGGGGGGTGATCTTGCCTATCGCTCGATACCACATTGTCA
TTGAAATTCGATTTCCTGCTCAAGAACGAGCTCTTGGCACAGGGGGTGGC
TTAAGTGGCCTTTAATACCCGCCTCTACTCTACCATCATCGAGGGTTTTC
AAATGGGTCCAGCGGGTGCGGTGTCTTCATGTCACCTACGGCATTAATGC
TGTAGATTAGAGTCGCAGAAAATACCTAGACTATTCCAGTAATAGCAGCC
TTCGGCCGCAGAATTAAACTCCCTGGAGAACGTCCCACGCCTCGCATATG
GCCGCACAGACGAGTGGTAAAGGAGACTAAAATATCAATCATGCTTGTTT
TTCGAGTGTTTGCCGTCTCACCAGCAAATCGTCAAATCTTAATCCTATCA
GGATGTCAGACACACAATGCCACGCCTCGTATCTGAACATGACAAGCTAG
CCTACTCCTAATTGCACCAATCAACTCCGTGTATGTTTCAGCTGCGTACC
AAACTCTGTCGAAGTCATGGGCGGCAGCAAGGGCTGCAGCGTTGACAATC
GGTCTTTCTTCGGAACGGCAGCGTTGTACTTTAGCCTTACAACTCTTGTA
GTCAGCTACAGATGCACGACTTCGGTGCATGCCTGGGTGAGAGACACGTA
ATTTACACGCGGTGGGCACGCTCCTGCCTAACATATATGACACAATATAA
C

Coding sequence (CDS) from alignment at Scaffold_501:156531..159931-

>EsuBft99_12a-0001 ID=EsuBft99_12a-0001|Name=EsuBft99_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=201bp|location=Sequence derived from alignment at Scaffold_501:156531..159931- (Ectocarpus subulatus male Bft15b)
ATGCGCTCCAACTCGCGAGATAGCACCACCGTGGTCGCTACCATCAGCGC
TGATGGTCACACCTGGGCACCAACCAATATCTTCAAAGGGCAAAGACTTC
AGGTCGATTGGTTTGTAGAGCGAAACGGCCCGGAGGGTGCGAGGTACACC
TATACGGATTCTTCGTTCATGGAGGGAGACGTATTCATCGCCATTGAATA
G