EsuBft99_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_11a-0001
Unique NameEsuBft99_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:143144..144197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft99_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length41
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_11aEsuBft99_11aEctocarpus subulatus male Bft15bgeneScaffold_501 143144..144197 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_11a-0001-exonEsuBft99_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 143144..143269 -
EsuBft99_11a-0001-exonagat-exon-40604Ectocarpus subulatus male Bft15bexonScaffold_501 143420..143553 -
EsuBft99_11a-0001-exonagat-exon-40603Ectocarpus subulatus male Bft15bexonScaffold_501 144044..144197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_11a-0001-cdsEsuBft99_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 143144..143269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_11a-0001EsuBft99_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 143144..144197 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_11a-0001 ID=EsuBft99_11a-0001|Name=EsuBft99_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_501:143144..144197- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATAGGAATCATGAACTGCGAGGGGGGCGAGCAGGAATGGCTGCG
GCCAGCTGTACCAGCTTCTAGACCGACCGCACCAACCGAGAGCAAGAGGA
CACGCATCCTCAAGCATCGGACGTTTGCACCAAATAGCTTCGGGCGAAGT
AAAGGGGAAGGGGGGAAGGACGACATTGAAATCGCCAAAGACGACGAAAA
ATTCCGCAACGGTCTCAAGAGAAATATCATCCACCTCTCCAACCTTACAA
GGGTCAATCAGGAACAGCTGGCTCGACTCCGTGAGCAGGTGCAGACAAAA
AAATCGAGAACGAACGTGGACTACATCAGTCCAACGTTTTCCGCACGCTA
CTGCCGGCTGTACATCAAATTTTTCGTTGGGAGTGGCGCCGAAATGATGC
CGCCAGGAATTTAG
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protein sequence of EsuBft99_11a-0001

>EsuBft99_11 ID=EsuBft99_11|Name=EsuBft99_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MDIGIMNCEGGEQEWLRPAVPASRPTAPTESKRTRILKHRTFAPNSFGRS
KGEGGKDDIEIAKDDEKFRNGLKRNIIHLSNLTRVNQEQLARLREQVQTK
KSRTNVDYISPTFSARYCRLYIKFFVGSGAEMMPPGI
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mRNA from alignment at Scaffold_501:143144..144197-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_11a-0001 ID=EsuBft99_11a-0001|Name=EsuBft99_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1054bp|location=Sequence derived from alignment at Scaffold_501:143144..144197- (Ectocarpus subulatus male Bft15b)
ATGGATATAGGAATCATGAACTGCGAGGGGGGCGAGCAGGAATGGCTGCG
GCCAGCTGTACCAGCTTCTAGACCGACCGCACCAACCGAGAGCAAGAGGA
CACGCATCCTCAAGCATCGGACGTTTGCACCAAATAGCTTCGGGCGAAGT
AAAGGTGATGGTGAAAGAAAGTGAAAGTCTACATGTCCTGTAGACTACAG
TAGACGTAGTGTACTACTGCTGTATATCGCCGGACAAGACGTTTGGGCGC
ACCAACCGGGGCCACACAGGAGCATAGTCTACCACACAACAAGAAGTGAA
ATGCGCGTGCGTGTGTGTTGCCATTGATAGCAAGCATCGACGTGTGGGGG
CATAACCAATGTAGCCTAGACTATGCCGTTATATGCATGTGGTCGCGGTT
CATGTGGTGTCTTTCAGCATTACGGTGCGTCGAACACGGCGATGTCCAAA
CTGCGCATCGCGGCGTATGTTCGCCATCCCATTTTGAAGAAACCTTCGCT
AGCAGTTTCTTCCTATCCTAGGACCTTTTGCCACTCGAATGGAGGAGCTC
CGCTTCGGTAATCGGCGCTATCTGGGAGTAACATCTCAGGGTCCAATACC
ATATTTTATTTCTTATCCTGCTTCTGCCCGTGCAGCTCCCTCAGGGGAAG
GGGGGAAGGACGACATTGAAATCGCCAAAGACGACGAAAAATTCCGCAAC
GGTCTCAAGAGAAATATCATCCACCTCTCCAACCTTACAAGGGTCAATCA
GGAACAGCTGGCTCGACTCCGTGAGCAGGTAAGGATATATGTAGTCTGGT
CCATGTACTGCAGCAGAGCAGTAGTCTACTCCATATTATTTTGTTGTTAC
TAACACGTTGTTCCACACACACACAAAGAAAATATGCTTCACAAATACAG
GGCCAGTTGTCCCATCCTGATTTAGCAGGTGCAGACAAAAAAATCGAGAA
CGAACGTGGACTACATCAGTCCAACGTTTTCCGCACGCTACTGCCGGCTG
TACATCAAATTTTTCGTTGGGAGTGGCGCCGAAATGATGCCGCCAGGAAT
TTAG
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Coding sequence (CDS) from alignment at Scaffold_501:143144..144197-

>EsuBft99_11a-0001 ID=EsuBft99_11a-0001|Name=EsuBft99_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_501:143144..144197- (Ectocarpus subulatus male Bft15b)
ATGGATATAGGAATCATGAACTGCGAGGGGGGCGAGCAGGAATGGCTGCG
GCCAGCTGTACCAGCTTCTAGACCGACCGCACCAACCGAGAGCAAGAGGA
CACGCATCCTCAAGCATCGGACGTTTGCACCAAATAGCTTCGGGCGAAGT
AAAGGGGAAGGGGGGAAGGACGACATTGAAATCGCCAAAGACGACGAAAA
ATTCCGCAACGGTCTCAAGAGAAATATCATCCACCTCTCCAACCTTACAA
GGGTCAATCAGGAACAGCTGGCTCGACTCCGTGAGCAGGTGCAGACAAAA
AAATCGAGAACGAACGTGGACTACATCAGTCCAACGTTTTCCGCACGCTA
CTGCCGGCTGTACATCAAATTTTTCGTTGGGAGTGGCGCCGAAATGATGC
CGCCAGGAATTTAG
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