EsuBft999_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft999_4a-0001
Unique NameEsuBft999_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:59379..61081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft999_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length166
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft999_4aEsuBft999_4aEctocarpus subulatus male Bft15bgeneScaffold_463 59379..61081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_4a-0001-exonagat-exon-91868Ectocarpus subulatus male Bft15bexonScaffold_463 59379..60250 -
EsuBft999_4a-0001-exonEsuBft999_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 60294..61081 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_4a-0001-exonagat-three_prime_utr-23919Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 59379..60250 -
EsuBft999_4a-0001-exonagat-three_prime_utr-23920Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 60294..60763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_4a-0001-cdsEsuBft999_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 60764..61081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_4a-0001EsuBft999_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 60764..61081 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft999_4a-0001 ID=EsuBft999_4a-0001|Name=EsuBft999_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1660bp|location=Sequence derived from alignment at Scaffold_463:59379..61081- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGGGGGCGGGGGCGGGGGCAGGAGCAAGGGCGGTCGCGGGGGTG
GGGGCCCGGGCTGGCGCTGTCGGCGGCGGACCGGGCGGCGGACCGGGGGG
GGGACGCTGGGGTGAACCTGTACGTGGTTGAGGGTGCAGAGCGGGCGGGT
ACACTTTTGCCCTTTACAGTGGGAGTGAAACGCGCGGTGGGGGGTTCCCC
ACGTGAGGAGGTCCTGCTGGAACGAGGACAGTGTCGCCACCGCGTGTTGG
TTGGCGACGGGTGCGGCGGTTCTCCGCGGCCGGGATGCTATATGTCCGCT
CGTGGCGCTGCTCGCTGACGCTTTCCTCTTCTGTGGTTGCGGGAGCCCGG
CCAGGCCGTTGTTGAGCTTTCTGACGATGGCGTTGGCGCTGCCTTCCGCG
GTGAGACCACGCAGCCGCGAAAACGCGCGGGGGGGGACGGGTTGCACGTC
GTCCTCTGCCGGCGGGGAGATGTCGTGGTCGGCGCGGGTCGCGACGCCAA
AGTCCGAGACGTTCCCGAGATACTCGTTGATGTCGGTGTTGGTGTCGGTG
ATCAGGCGCGTCTTCACCGCTGCTTCTTGACCCGTGATCTCCGCTGAATG
AAGGCTGAGGTAGTCCCGGGCGTCGGACACAACGCGGCTGACTTCGGCTT
TCAACTGTTGCCTGCAACCGGTCGATGGTTCGCCTGCGGCGTATGTGCCA
TGGTCCAACACGGCGAAGAATGCTTTCACGAACGTCTCGAGGTGAACGAT
GAAGTCGCGTGGCTGCGGGGTCCACCCCGTAGGGAGGGCGAATCGATCAT
TTCGGCGTCGGGATAGGCCACTTTGCGCAGCAGCTGGGCGATTGCGTTCT
TTGACAGCGTGGTGCTAACGAACCACCCGCCGCGCAGCAGAAGCAGCGTC
GCCGCGGACTCGGCTCCCCATGCCTTCGTATCGCGGCGAAACCATTCTTT
CTGTACATGGGTGTTTAGGGCCTTGTTCGACACGTTCATGTTTTGGCCCA
GAGCTTGCGCTTGCTGGGGCTGTAGCACGATCTGGCCACCTAGAGGGAGA
TTGATGGGCTGGGGCTGACCTTGCTGCTGGAGGCCGCCAGGGGGGAGGTG
GCCAGGCTGCTGTTGCTGGTGCTGCTGCTGCTGCTGGTCCTGCGGGTGCT
GCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCATCCTGAGC
TCCAGGTTGCCGAGTCGGTCGTTTTGCTCTTTTAGCAGTACAGACATCTG
CAGCAGTAGCTGGACAGGGTTGATGGGGGGAGGTGGGCCTCCCAGCCCGG
CTGGCGCGGCTCCGCCCGCGTTCTGGTCTCCTCCTCCTGCTGCCGGAGGC
GCGTTGTTGTGTCCCGCCGCCTGTTGGTTTCCCGCCGCCCCTGCTGGCTG
GTTTCCCGCTGCTACTGCCTGTCCGCCACCATGGGGAGCTGCCGCTACTG
CTCCTCCTCCGCCGCCGCTGCTCTGCTGTTGGTTAGCTGCGGGCGGTGGT
CCACCTGGAGGCGGCAGTGGAGGCGGTGGAGGTTGCGTTGGCTGCGCTGG
CTGCGGCTGCTGGGGGGGACCCTGACCCTGCTGCTGCAGGTTGTTGCCGT
TGTTCATCGCTCCGGCGTGTCTAGGACAAACTCGATCAAATTCGATCAGG
TCCCAAACGA
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protein sequence of EsuBft999_4a-0001

>EsuBft999_4 ID=EsuBft999_4|Name=EsuBft999_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MRRGRGRGQEQGRSRGWGPGLALSAADRAADRGGDAGVNLYVVEGAERAG
TLLPFTVGVKRAVGGSPREEVLLERGQCRHRVLVGDGCGGSPRPGCYMSA
RGAAR
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mRNA from alignment at Scaffold_463:59379..61081-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft999_4a-0001 ID=EsuBft999_4a-0001|Name=EsuBft999_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1703bp|location=Sequence derived from alignment at Scaffold_463:59379..61081- (Ectocarpus subulatus male Bft15b)
ATGCGGCGGGGGCGGGGGCGGGGGCAGGAGCAAGGGCGGTCGCGGGGGTG
GGGGCCCGGGCTGGCGCTGTCGGCGGCGGACCGGGCGGCGGACCGGGGGG
GGGACGCTGGGGTGAACCTGTACGTGGTTGAGGGTGCAGAGCGGGCGGGT
ACACTTTTGCCCTTTACAGTGGGAGTGAAACGCGCGGTGGGGGGTTCCCC
ACGTGAGGAGGTCCTGCTGGAACGAGGACAGTGTCGCCACCGCGTGTTGG
TTGGCGACGGGTGCGGCGGTTCTCCGCGGCCGGGATGCTATATGTCCGCT
CGTGGCGCTGCTCGCTGACGCTTTCCTCTTCTGTGGTTGCGGGAGCCCGG
CCAGGCCGTTGTTGAGCTTTCTGACGATGGCGTTGGCGCTGCCTTCCGCG
GTGAGACCACGCAGCCGCGAAAACGCGCGGGGGGGGACGGGTTGCACGTC
GTCCTCTGCCGGCGGGGAGATGTCGTGGTCGGCGCGGGTCGCGACGCCAA
AGTCCGAGACGTTCCCGAGATACTCGTTGATGTCGGTGTTGGTGTCGGTG
ATCAGGCGCGTCTTCACCGCTGCTTCTTGACCCGTGATCTCCGCTGAATG
AAGGCTGAGGTAGTCCCGGGCGTCGGACACAACGCGGCTGACTTCGGCTT
TCAACTGTTGCCTGCAACCGGTCGATGGTTCGCCTGCGGCGTATGTGCCA
TGGTCCAACACGGCGAAGAATGCTTTCACGAACGTCTCGAGGTGAACGAT
GAAGTCGCGTGGCTGCGGGGTCCACCCCGTAGGGAGGGGTGGGGAGAACT
TGGCGATGTCGACGTTGGCGAGGGTCATCAGCGAATCGATCATTTCGGCG
TCGGGATAGGCCACTTTGCGCAGCAGCTGGGCGATTGCGTTCTTTGACAG
CGTGGTGCTAACGAACCACCCGCCGCGCAGCAGAAGCAGCGTCGCCGCGG
ACTCGGCTCCCCATGCCTTCGTATCGCGGCGAAACCATTCTTTCTGTACA
TGGGTGTTTAGGGCCTTGTTCGACACGTTCATGTTTTGGCCCAGAGCTTG
CGCTTGCTGGGGCTGTAGCACGATCTGGCCACCTAGAGGGAGATTGATGG
GCTGGGGCTGACCTTGCTGCTGGAGGCCGCCAGGGGGGAGGTGGCCAGGC
TGCTGTTGCTGGTGCTGCTGCTGCTGCTGGTCCTGCGGGTGCTGCTGCTG
CTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCATCCTGAGCTCCAGGT
TGCCGAGTCGGTCGTTTTGCTCTTTTAGCAGTACAGACATCTGCAGCAGT
AGCTGGACAGGGTTGATGGGGGGAGGTGGGCCTCCCAGCCCGGCTGGCGC
GGCTCCGCCCGCGTTCTGGTCTCCTCCTCCTGCTGCCGGAGGCGCGTTGT
TGTGTCCCGCCGCCTGTTGGTTTCCCGCCGCCCCTGCTGGCTGGTTTCCC
GCTGCTACTGCCTGTCCGCCACCATGGGGAGCTGCCGCTACTGCTCCTCC
TCCGCCGCCGCTGCTCTGCTGTTGGTTAGCTGCGGGCGGTGGTCCACCTG
GAGGCGGCAGTGGAGGCGGTGGAGGTTGCGTTGGCTGCGCTGGCTGCGGC
TGCTGGGGGGGACCCTGACCCTGCTGCTGCAGGTTGTTGCCGTTGTTCAT
CGCTCCGGCGTGTCTAGGACAAACTCGATCAAATTCGATCAGGTCCCAAA
CGA
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Coding sequence (CDS) from alignment at Scaffold_463:59379..61081-

>EsuBft999_4a-0001 ID=EsuBft999_4a-0001|Name=EsuBft999_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_463:59379..61081- (Ectocarpus subulatus male Bft15b)
ATGCGGCGGGGGCGGGGGCGGGGGCAGGAGCAAGGGCGGTCGCGGGGGTG
GGGGCCCGGGCTGGCGCTGTCGGCGGCGGACCGGGCGGCGGACCGGGGGG
GGGACGCTGGGGTGAACCTGTACGTGGTTGAGGGTGCAGAGCGGGCGGGT
ACACTTTTGCCCTTTACAGTGGGAGTGAAACGCGCGGTGGGGGGTTCCCC
ACGTGAGGAGGTCCTGCTGGAACGAGGACAGTGTCGCCACCGCGTGTTGG
TTGGCGACGGGTGCGGCGGTTCTCCGCGGCCGGGATGCTATATGTCCGCT
CGTGGCGCTGCTCGCTGA
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