EsuBft998_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft998_5a-0001
Unique NameEsuBft998_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_49contigScaffold_49:220498..221046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3750.XP_008350380.1
ProteomeIdEsuBft998_5
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length549
Hectar predicted targeting categoryother localisation
Evalue1.88e-10
EggNOG OGsCOG0580@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0223@2759|Eukaryota,37I73@33090|Viridiplantae,3G7V9@35493|Streptophyta
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K09872
KEGG TC1.A.8,1.A.8.11
DescriptionBelongs to the MIP aquaporin (TC 1.A.8) family
COG categoryG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft998_5aEsuBft998_5aEctocarpus subulatus male Bft15bgeneScaffold_49 220498..221046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft998_5a-0001-exonEsuBft998_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_49 220498..221046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft998_5a-0001-cdsEsuBft998_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_49 220498..220767 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft998_5a-0001-exonagat-five_prime_utr-15596Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_49 220768..221046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft998_5a-0001EsuBft998_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_49 220498..220767 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft998_5a-0001 ID=EsuBft998_5a-0001|Name=EsuBft998_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_49:220498..221046- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCGGGGTAATCCAGTTCT
TCCTATCGTCTACAAGAGAGGACAGTTTTGGCTAGCGGCGTTTACGGATT
CATCCTTGGGAGCAAACCCCGACAACGGAAGATCTACCACGGGATATCTC
TTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGAAGACTCAAACTCT
AACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGCTACTCAG
CCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGAACTCAACTTCAAG
ACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGCTGACAGT
GGCCGGGAATGCCATGCACTCTCAACGCACGAAGCACGTGGCCCTGAGGT
ACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAATCACTCTTCACCAC
CGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCAAGTACCTCCCAAA
GCACCGGTTCGCCTCCATCATTCAGCAGATTCAGGACTTCTCGTGTTGA
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protein sequence of EsuBft998_5a-0001

>EsuBft998_5 ID=EsuBft998_5|Name=EsuBft998_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLR
GQITLHHRPSEHQLADIATKYLPKHRFASIIQQIQDFSC
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mRNA from alignment at Scaffold_49:220498..221046-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft998_5a-0001 ID=EsuBft998_5a-0001|Name=EsuBft998_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_49:220498..221046- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCGGGGTAATCCAGTTCT
TCCTATCGTCTACAAGAGAGGACAGTTTTGGCTAGCGGCGTTTACGGATT
CATCCTTGGGAGCAAACCCCGACAACGGAAGATCTACCACGGGATATCTC
TTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGAAGACTCAAACTCT
AACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGCTACTCAG
CCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGAACTCAACTTCAAG
ACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGCTGACAGT
GGCCGGGAATGCCATGCACTCTCAACGCACGAAGCACGTGGCCCTGAGGT
ACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAATCACTCTTCACCAC
CGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCAAGTACCTCCCAAA
GCACCGGTTCGCCTCCATCATTCAGCAGATTCAGGACTTCTCGTGTTGA
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Coding sequence (CDS) from alignment at Scaffold_49:220498..221046-

>EsuBft998_5a-0001 ID=EsuBft998_5a-0001|Name=EsuBft998_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_49:220498..221046- (Ectocarpus subulatus male Bft15b)
ATGACGGAACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGA
CAGCACCGGAGCGCTGACAGTGGCCGGGAATGCCATGCACTCTCAACGCA
CGAAGCACGTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGG
GGACAAATCACTCTTCACCACCGGCCCAGCGAGCACCAGTTGGCTGATAT
CGCGACCAAGTACCTCCCAAAGCACCGGTTCGCCTCCATCATTCAGCAGA
TTCAGGACTTCTCGTGTTGA
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