|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LIV8 |
| ProteomeId | EsuBft997_7 |
| Protein domains | Coil |
| Protein domains | IPR019339 |
| Protein domains | PTHR24016 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | uncharacterized zinc finger cchc domain-containing protein at4g19190 os:arabidopsis thaliana gn [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1711 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.38e-166 |
| EggNOG OGs | KOG3794@1|root,KOG3794@2759|Eukaryota |
| Ec32 ortholog description | CBF1-interacting co-repressor CIR, N-terminal domain |
| Ec32 ortholog | Ec-20_001740.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | CIR1 |
| KEGG ko | ko:K06066,ko:K14558 |
| KEGG Pathway | ko03008,ko04330,map03008,map04330 |
| GOs | GO:0000003,GO:0000122,GO:0000981,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003705,GO:0003712,GO:0003714,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005815,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015630,GO:0016070,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034641,GO:0042826,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 |
| Description | RNA splicing |
| COG category | E |
| BRITE | ko00000,ko00001,ko03009 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0044424 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft997_7a-0001 ID=EsuBft997_7a-0001|Name=EsuBft997_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1711bp|location=Sequence derived from alignment at Scaffold_129:835248..839567+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCGCTTTGCGAGTCTGCAACTAATAGCTGCGTGCCAGGGAGCATGTCG CTGTCCTTTCTCTTCTGTAAACCATGGCATCCAGCCACGACCTGGAATCA AAAAAAGATTTGGGAGGCCGAGCAAGCGGAGCTCAAGAAAAAAAAGGACG AGGCAATCGCCAACAAGGAGCTCAAGAGGGACAGCGACAGGCGCTTCTAC GAGAATTTGGCCGGGGGGAAGCCGCAGGACGCCTCCGCCGCCGCGTTGAA CTTCATGTACAACCCCCCCCCTGGGTACCAGCAGCCCGAGGAGGAGGAAC TTAACGATGACGACGAAGCGGTCAAGAAATTCAAAGCTCTTGCCAAAATG AAGGCGGACCCCAACTTTTCGGCGGCGACACAAAGCTCGGAGCTGGAAAA GCTGGTGGGCAGGCGGGTAAACCCGGGCGTGTCCCTCGCGGAACAGCAGG AACGGTTCCCGTTTCTCAAGGACGCGCCGGTGGAACACGCCTACGCGGCG GGGGTGAAGGTGAATTTCAAGCCTTTCAACAACGTGATCCGGCACGTTCG ATGCATGCGCTGCGGCGAGTGGGGGCACCGAAGCGGCGACCGCGAGTGCA GCGTCGACGAGAACCCCCACGACGCGGAGCGCCAGAAGCGCGAAGACCCA ATGTCGTACATGGCGGCCGCTTCTGGGGGCGGGCAAATGGAGAGCTCTAC GTATGGCGGGGGCGGAGATGATGCAAGCGCGGACCCGGACTCGGAGTACG TGAATAGTCTTTCGACGAAGAAGAAGCGGCGTCTGCTAAAGTTGCTGCAG AAGATGGAGGAGGGGGGCGGGGAGGCGCGGAAGAGCGCCAAGAAGAAAGA TCGCAAAGGAAGGAAGAAGCGGAGCAGCAGCAAGCAGGGATCAAGAGAAA GTGACGGCGGTGGTGCCGGGAGTGGCTCAAAGAGAGAGAACGAGAGGAGA CAAATTCGTAAGGGAACGAGTCGTGAGGGAGACGGGAAGGAACAGATATC TTCGAGAAGTGCCGTTAACGACCACAGGAAGGACAGGAAGCGAAAGAGAG AAGAGCGGGATGATGGGAGCAGCAGGAGAACGGATAGCAATGATGTCATC GGCCACAAGAGGGGTAAGGAAATGGGGGAGGATGGCGTAGCTGCGGAGGA AAGCGGCCAGGATGCAGCAAGAAAGGTGGCGGGATTGGAGGCACGGTCTT CGTCGAGGGAAGAAAGAGACGCCCAAGAAAAAAAGAGACGCCGAAAAAAA GAAAAAAAGAAGGGCCGGGTGGAGGATCACGACAGAGGCTCGACTCGTAA GAGCAGTAGCGGTCGCAACCACCGTCATGGCAAGGACAAGAAGTGAATAG GGGGGGTTGCGACGGGTGGAGCTGTGTGTGTGTGTGCTGCGCAACAAGTC ATGATGACCGTAACAATGGGAGGTCCACCAACTTCAGGCAGCAGAAGCAG CAAGGCAGCAGCAAGGATATATGGTGGCATCGCTAAGAATGGCAAAGGTA GCTGGATGCCGGTGCACGATTCCGTTGTTTGGTTAGATAGTGTGGCACCG CAGGAGAACCTGGAGTTCAGCAAACGATGTTTTTCCCGTCGGTTTACTTG TACCTGCTTCCGCGGCAAAGTCACTAGATCGCTTTTCTGGAACAGCTTCT GGGAAACCTAACCAGTCCCGTTGGTTACAACTGCTGTGGGTGGCATTACC CGATGGCGCTA back to topprotein sequence of EsuBft997_7a-0001 >EsuBft997_7 ID=EsuBft997_7|Name=EsuBft997_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MSLSFLFCKPWHPATTWNQKKIWEAEQAELKKKKDEAIANKELKRDSDRR FYENLAGGKPQDASAAALNFMYNPPPGYQQPEEEELNDDDEAVKKFKALA KMKADPNFSAATQSSELEKLVGRRVNPGVSLAEQQERFPFLKDAPVEHAY AAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDENPHDAERQKRE DPMSYMAAASGGGQMESSTYGGGGDDASADPDSEYVNSLSTKKKRRLLKL LQKMEEGGGEARKSAKKKDRKGRKKRSSSKQGSRESDGGGAGSGSKRENE RRQIRKGTSREGDGKEQISSRSAVNDHRKDRKRKREERDDGSSRRTDSND VIGHKRGKEMGEDGVAAEESGQDAARKVAGLEARSSSREERDAQEKKRRR KKEKKKGRVEDHDRGSTRKSSSGRNHRHGKDKK back to topmRNA from alignment at Scaffold_129:835248..839567+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft997_7a-0001 ID=EsuBft997_7a-0001|Name=EsuBft997_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4320bp|location=Sequence derived from alignment at Scaffold_129:835248..839567+ (Ectocarpus subulatus male Bft15b) CCCCGCTTTGCGAGTCTGCAACTAATAGCTGCGTGCCAGGGAGCATGTCG
CTGTCCTTTCTCTTCTGTAAACCATGGTAAGCGCTACAACCTGAGGATAG
TTTGCCTCGTTACACACACCCAAGCTGCTTCTGGGAATTCCACCGCTATT
TTTAGACTTGCCGCCTCCGCCTGTCTCGAAACTGCTGCTGCCGTCGATTT
GCTTTGCCTGTGTGTACGCGTCTTACGCTTACGCTGGAATCTGTAAGTTG
ACGAGCATGGCTGTGTTCAATCATGCGTATCGAGGGCGTGTCATTGCTAG
CATTTGCACAAGCGAGCTATTATAAAAGTCATACGCTTGTCAAGTTGTCC
TTGTCTTCGCGGATGATACTTGTACCGCAACAACAGCCGTAGACGACCTT
CTGCAGGGTGCAGGATACCAATGAATACTCTCCAATTCGCGCAAGTTTAC
CCGTAGTTTGCCGACAACCTCCTGCCATTCTCGCTCGCCAGGCATCCAGC
CACGACCTGGAATCAAAAAAAGATTTGGGAGGCCGAGCAAGCGGAGCTCA
AGAAAAAAAAGGACGAGGCAATCGCCAACAAGGAGCTCAAGAGGGACAGC
GACAGGCGCTTCTACGAGAATTTGGCCGGGGGGAAGCCGCAGGACGCCTC
CGCCGCCGCGTTGAACTTCATGTACAACCCCCCCCCTGGGTACCAGCAGG
TGAGTCTCTCGTACTGCAAACGGATGACTCTAGATAAAGAAGTAAAAATT
CTAATTACGCGAGATAGAGTGGCGGATTTCTAGCGCAAGGGGCACTGCAG
TACAGGCGAGCAGTGTGACACGTTGCGCTATTGTGGCAAGGTACCCACGA
CAGGGGCCAACCCAAGCGAGCTGCTATTATAGGTACAGGTACCGCTGTTC
TTTTGGCGACGGCTCTGGGTGAGGGAGAGAGAGAGGGATGTATTTGTAGA
CGCCCACCGCCACCACCATTACCTGTGCTTCGTGGCTACTCTTGGTCATG
ACAACATTCGCCTGCACTTCGCGCCAATTCAACAGTCAACCCACCCCTTC
GAATGTGTTTTTTTCTGGTTTTCTCTCGAACGGGTACATAGTCTTCCTCT
GATAGTATGTAATCGTGAAAACATCGGATCGTGGACTGTTCTATTAACAA
ACACGCAAAAGCTCATGCCACCGCCGCGTCGAACCTGCCGCTGCCACCGC
CGCCGTCGCCGCTTTAGCCCGAGGAGGAGGAACTTAACGATGACGACGAA
GCGGTCAAGAAATTCAAAGCGTGAGTCTAGGCAGTTTCTTTCGCTGCTAG
CCTCGGTCAAACGTCAGCGCGTGTAGGTTTCCAGTGGGAAACGCACCCTG
TTGTGGTATGTGACCGCTACTTCTGTTGGCCGTAGTTTGTGTGTAGAATT
ATCGGCACAACGGCGGCACCGCTGGTGTTGTCCTGACCGTGGCGTAGTTC
AATGATCAGCGATTCGCGTACGTAGAAAATGCGTTGCAAACATTGTGAAA
AACAGCAGTAGCATACGGCAGTCGTAGTAGTTTGCCTTGCAAGGGAACCA
GACCGTTCTGAGCGAAGGTGCTGTCGGTCGACAGTTGGAGGTGACAGGCG
ATGCCAATTGTTGCACAAGTCTTTCGGCTCGGCTTCGGATGGCAATATCG
ACGTTTCATGTTGCAGTTTGTCTCCTCCTACGTAGCCTCGAGCACCCGAC
TTGGTATTAGTTCATTCTCACTCCCACAACATCATATTGAACACCATCCC
TGCCACATCTCTTCTATCTGCCTTGTCACCTCGCTATTCGAACGTCCTCA
GTCTTGCCAAAATGAAGGCGGACCCCAACTTTTCGGCGGCGACACAAAGC
TCGGAGCTGGAAAAGCTGGTGGGCAGGCGGGTAAACCCGGGCGTGTCCCT
CGCGGAACAGCAGGAACGGTTCCCGTTTCTCAAGGACGCGCCGGTGGAAC
ACGCCTACGCGGCGGGGGTGAAGGTGAGGGGCTTTATCGGAGAGTAGGGA
GTGCACGCCAGCCACAGTTTTGGTTTCGGCGCTTGTGGCTGGACGACGAC
GGGGCGCCCGAAGCAACTCCTCCTGCTATGTATGCGAGACGTTGGTGTTC
TTCTCGGCGCGTTTTTGACTCGTCTTTGTGGAGTTCGCCCCGGACGGCGG
CTTAGAACTTGCCCGTGGCTTGTATGCGAGCTTTCGTCTTTTGTTATGTC
CTCCTCAACCATGGCTTCGTGGCTTCGTGGCTTCGTTGCAAGGTACTTAA
GTTCTTCCGCTCGGACATCAAGGATTAAAATATGGATACCGATCATGAGG
GGTGTCTCCACCCCGCTTAGCGGGTATTTGGGGGAAATATAGTTGGAGTC
TAGGGTATACGCATTTATTATAAGATTACAGCTTAGTAGTCTTAAAACAA
TACTTCTATAAGAGGCAAATAAGGTATCAAGATACCTCTCTAGACCGATT
ATACCTAAACAATAGTTTAATGCCCTCCATGATCCTTATTTTGTCCTTAG
AATGCATTTACGTCTTAAAGAAAATATTTATCAAAGCATTTTAAATATTA
AATATCCATTCTAAGAGGCGGATAAGGGGCAAACTGTACATGAAATTGAA
TTTGATCACTTATTTAACGATGATGAATAAAACATACGCACACTATATAA
ACAATCTGATACTCTTTTTAAAATTTATCGCTATTTTGTTACTTGTTACA
AAATTAGCAGACCTTACTTCTTTATTTGACGACATAAGTAAAGCAAAAGA
CTTTTTCTTTTCAAGTTATAAGGATGATTTAGAAGAGCTTATACTCGAGG
AAGAAGATTTTCCAGAAGTTGAAATCGAAATTCCTTCAAGTATTGAAAAC
ACACCCAGTTCAAATCTGGAGCCCCAAAACAATAAATATCTATGTACTAT
TTTAAAAATTAGTGGAGCTATTGTTTGTGGTGCAGCTCTTATATTTGGAA
TTAAACCCGTCCCGGGAAGAGACAGCAGAGATGTCGACCCACGTCAACAA
GCGCTGTACGATATGTTGCTTTTTTCACGCCTGCCCATCTCTCATCTTTT
GTCTCTTTCGTCCCGCTCTCACCATTCATTTTCCCGCCTCAATCGTTGAT
CAACGCGGCCCGCCAAAGGTGAATTTCAAGCCTTTCAACAACGTGATCCG
GCACGTTCGATGCATGCGCTGCGGCGAGTGGGGGCACCGAAGCGGCGACC
GCGAGTGCAGCGTCGACGAGAACCCCCACGACGCGGAGCGCCAGAAGCGC
GAAGACCCAATGTCGTACATGGCGGCCGCTTCTGGGGGCGGGCAAATGGA
GAGCTCTACGTATGGCGGGGGCGGAGATGATGCAAGCGCGGACCCGGACT
CGGAGTACGTGAATAGTCTTTCGACGAAGAAGAAGCGGCGTCTGCTAAAG
TTGCTGCAGAAGATGGAGGAGGGGGGCGGGGAGGCGCGGAAGAGCGCCAA
GAAGAAAGATCGCAAAGGAAGGAAGAAGCGGAGCAGCAGCAAGCAGGGAT
CAAGAGAAAGTGACGGCGGTGGTGCCGGGAGTGGCTCAAAGAGAGAGAAC
GAGAGGAGACAAATTCGTAAGGGAACGAGTCGTGAGGGAGACGGGAAGGA
ACAGATATCTTCGAGAAGTGCCGTTAACGACCACAGGAAGGACAGGAAGC
GAAAGAGAGAAGAGCGGGATGATGGGAGCAGCAGGAGAACGGATAGCAAT
GATGTCATCGGCCACAAGAGGGGTAAGGAAATGGGGGAGGATGGCGTAGC
TGCGGAGGAAAGCGGCCAGGATGCAGCAAGAAAGGTGGCGGGATTGGAGG
CACGGTCTTCGTCGAGGGAAGAAAGAGACGCCCAAGAAAAAAAGAGACGC
CGAAAAAAAGAAAAAAAGAAGGGCCGGGTGGAGGATCACGACAGAGGCTC
GACTCGTAAGAGCAGTAGCGGTCGCAACCACCGTCATGGCAAGGACAAGA
AGTGAATAGGGGGGGTTGCGACGGGTGGAGCTGTGTGTGTGTGTGCTGCG
CAACAAGTCATGATGACCGTAACAATGGGAGGTCCACCAACTTCAGGCAG
CAGAAGCAGCAAGGCAGCAGCAAGGATATATGGTGGCATCGCTAAGAATG
GCAAAGGTAGCTGGATGCCGGTGCACGATTCCGTTGTTTGGTTAGATAGT
GTGGCACCGCAGGAGAACCTGGAGTTCAGCAAACGATGTTTTTCCCGTCG
GTTTACTTGTACCTGCTTCCGCGGCAAAGTCACTAGATCGCTTTTCTGGA
ACAGCTTCTGGGAAACCTAACCAGTCCCGTTGGTTACAACTGCTGTGGGT
GGCATTACCCGATGGCGCTA back to topCoding sequence (CDS) from alignment at Scaffold_129:835248..839567+ >EsuBft997_7a-0001 ID=EsuBft997_7a-0001|Name=EsuBft997_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_129:835248..839567+ (Ectocarpus subulatus male Bft15b) ATGTCGCTGTCCTTTCTCTTCTGTAAACCATGGCATCCAGCCACGACCTG GAATCAAAAAAAGATTTGGGAGGCCGAGCAAGCGGAGCTCAAGAAAAAAA AGGACGAGGCAATCGCCAACAAGGAGCTCAAGAGGGACAGCGACAGGCGC TTCTACGAGAATTTGGCCGGGGGGAAGCCGCAGGACGCCTCCGCCGCCGC GTTGAACTTCATGTACAACCCCCCCCCTGGGTACCAGCAGCCCGAGGAGG AGGAACTTAACGATGACGACGAAGCGGTCAAGAAATTCAAAGCTCTTGCC AAAATGAAGGCGGACCCCAACTTTTCGGCGGCGACACAAAGCTCGGAGCT GGAAAAGCTGGTGGGCAGGCGGGTAAACCCGGGCGTGTCCCTCGCGGAAC AGCAGGAACGGTTCCCGTTTCTCAAGGACGCGCCGGTGGAACACGCCTAC GCGGCGGGGGTGAAGGTGAATTTCAAGCCTTTCAACAACGTGATCCGGCA CGTTCGATGCATGCGCTGCGGCGAGTGGGGGCACCGAAGCGGCGACCGCG AGTGCAGCGTCGACGAGAACCCCCACGACGCGGAGCGCCAGAAGCGCGAA GACCCAATGTCGTACATGGCGGCCGCTTCTGGGGGCGGGCAAATGGAGAG CTCTACGTATGGCGGGGGCGGAGATGATGCAAGCGCGGACCCGGACTCGG AGTACGTGAATAGTCTTTCGACGAAGAAGAAGCGGCGTCTGCTAAAGTTG CTGCAGAAGATGGAGGAGGGGGGCGGGGAGGCGCGGAAGAGCGCCAAGAA GAAAGATCGCAAAGGAAGGAAGAAGCGGAGCAGCAGCAAGCAGGGATCAA GAGAAAGTGACGGCGGTGGTGCCGGGAGTGGCTCAAAGAGAGAGAACGAG AGGAGACAAATTCGTAAGGGAACGAGTCGTGAGGGAGACGGGAAGGAACA GATATCTTCGAGAAGTGCCGTTAACGACCACAGGAAGGACAGGAAGCGAA AGAGAGAAGAGCGGGATGATGGGAGCAGCAGGAGAACGGATAGCAATGAT GTCATCGGCCACAAGAGGGGTAAGGAAATGGGGGAGGATGGCGTAGCTGC GGAGGAAAGCGGCCAGGATGCAGCAAGAAAGGTGGCGGGATTGGAGGCAC GGTCTTCGTCGAGGGAAGAAAGAGACGCCCAAGAAAAAAAGAGACGCCGA AAAAAAGAAAAAAAGAAGGGCCGGGTGGAGGATCACGACAGAGGCTCGAC TCGTAAGAGCAGTAGCGGTCGCAACCACCGTCATGGCAAGGACAAGAAGT GA back to top
|