EsuBft997_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft997_6a-0001
Unique NameEsuBft997_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:840926..842879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIV9
ProteomeIdEsuBft997_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length42
Hectar predicted targeting categoryother localisation
Evalue1.39e-29
EggNOG OGsKOG1981@1|root,KOG1981@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionregulation of sperm capacitation
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft997_6aEsuBft997_6aEctocarpus subulatus male Bft15bgeneScaffold_129 840926..842879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_6a-0001-exonEsuBft997_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 840926..840992 +
EsuBft997_6a-0001-exonagat-exon-86284Ectocarpus subulatus male Bft15bexonScaffold_129 842243..842574 +
EsuBft997_6a-0001-exonagat-exon-86285Ectocarpus subulatus male Bft15bexonScaffold_129 842859..842879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_6a-0001-cdsEsuBft997_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 840926..840992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_6a-0001EsuBft997_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 840926..842879 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft997_6a-0001 ID=EsuBft997_6a-0001|Name=EsuBft997_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=420bp|location=Sequence derived from alignment at Scaffold_129:840926..842879+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGAGAGTTGAGCCTCGAGATCTCTCAGTCTACGGGAAGTCCATC
TATGAAGGAAGCGAAAGCAGCCGCCGCCCCGGAAACAAACCAAGAAGACG
AGGCCCAGGAAGAGAGCGCTTCCAACGTTCTCCGGAGATTATCCTCCCCG
ATCTTCGGCGCGGCCGGCTTCAACTCGGACAGCAAGGACAGCAACCACAG
TGACGGTGACTTCAACATCAACGAAGAGTCGAGGGGTGATGACGACGGCA
GCGATGACGAGGAGGAGACGGAGCGCAAGGAAGGCGCCGCCGAGGTGGTT
CAGCGGTGGTGGCGGGAGTGCCGGCGCGCGTCGAAGCGCACCAGGGCCGT
GGTTGCGGCGAGACCTGCGTTCGTTCGAATCCAGCAGCTCTTTGACAAGG
TAGCTTATCAACGTCTTTAG
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protein sequence of EsuBft997_6a-0001

>EsuBft997_6 ID=EsuBft997_6|Name=EsuBft997_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=139bp
MSRELSLEISQSTGSPSMKEAKAAAAPETNQEDEAQEESASNVLRRLSSP
IFGAAGFNSDSKDSNHSDGDFNINEESRGDDDGSDDEEETERKEGAAEVV
QRWWRECRRASKRTRAVVAARPAFVRIQQLFDKVAYQRL
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mRNA from alignment at Scaffold_129:840926..842879+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft997_6a-0001 ID=EsuBft997_6a-0001|Name=EsuBft997_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1954bp|location=Sequence derived from alignment at Scaffold_129:840926..842879+ (Ectocarpus subulatus male Bft15b)
ATGAGCCGAGAGTTGAGCCTCGAGATCTCTCAGTCTACGGGAAGTCCATC
TATGAAGGAAGCGAAAGGTGATTGCCAAACACCCGGTTGTCCTTGCGTTA
CGCGTCCACAGCAGTGCAGGACAGAGATGGACGCACAATAGTACCGCCCC
TTCGCACTGCACCAGCCACAAGCTGAGGTTATCCACACAAGCTTCTCCCA
CCCACATAGGTTTAAGTATCAGCGGGCTGATTGAAAAAGCCGAAGGAAGG
AATTGGGTCACCGCTGTCAATATCCTGCTGCTTCTTCCCGTTGAAACTTG
GATGACGGCCGGCTGCACCCTCTCTCGCGTGGATCCAACTCTATGTAGCC
TGTTTGGTCCATTGAAGTACTGTTATGTGAAGTGGGCCCACGACAGAGCC
AGGATAGCTGTCAAATACCAAAGCAGTTACCACGATCGATGTCGAGAGCT
TATTCAGTCGCGTGCTTTGCCCATCATTGAAAATTCGGACACCCACCATG
CAGCAGTTTGCGGATAGTTCGACGGTTTTTTGGTTTTCTTAAAAAAAACG
GCCAAGCGGGAGAGGGGGAGAGCAGCTTCGCGAGAGAGTTGGGGTTACAC
ACCAAACTACCATGCCGGACAATTTTTTCTAGAGGGGAAAGCGGCGACGT
GTGCAAGCAGTGCTGCTGCTGTGGAGCATAGAGCTTTGCTGGCGCTCAAT
GCTACACATGGTATGCTATGTAGCAAAACGGTAGAGGGTCTGAGTGCGTA
CATAGTGCTGTATGCACGAGCAACAGACGTGCTTCACAAACCACGCGCAC
GAAAAAACACAAAACACGCTGCGTGGAACTTGCAGGCACACCCGAATCCG
GGTTTTACGGAACTTCTATCCCAACGCCCCAAGTGTATGGCCAGGGAGGG
AGTAAAGTGGCTGTAGTCTAGAGGACTAATCGTCACTCAATGGCCAGGTC
TTTTCTTGCACGAACTCTGCGATAGGTGTGTCAATAGCAACCATCTCGCG
GCCAGAGCGATGCCCATCAACCCGGTTGTCGCCTGCTACCGCCTATCCGT
TGGTTTCAGTACGCATTCCGCACCCCGACCTTGATTTCGTTGCCACCAGC
AAAGGAATGCTGATCATCACACGCAACGCAAAACACCACGGGGCACAATC
ACCACCACCAACGAACAGCAGCAGAAGCAGAACAACCACCACCACAACAT
CGAGGAGGTAAAGCATAGTCTGAACGGTCCCAAGCAGGGTCTTCACGCCC
CCTCACTTGCTCGAACGTATCCAATTCCACAATCACAACGCCATTCACAA
CCCACCCACGCCAGCAGCAGCCGCCGCCCCGGAAACAAACCAAGAAGACG
AGGCCCAGGAAGAGAGCGCTTCCAACGTTCTCCGGAGATTATCCTCCCCG
ATCTTCGGCGCGGCCGGCTTCAACTCGGACAGCAAGGACAGCAACCACAG
TGACGGTGACTTCAACATCAACGAAGAGTCGAGGGGTGATGACGACGGCA
GCGATGACGAGGAGGAGACGGAGCGCAAGGAAGGCGCCGCCGAGGTGGTT
CAGCGGTGGTGGCGGGAGTGCCGGCGCGCGTCGAAGCGCACCAGGGCCGT
GGTTGCGGCGAGACCTGCGTTCGTTCGAATCCAGCAGCTCTTTGACAAGG
TGCGGTGGTGGCGTAGGGGGGGAAAGGGGAGCGTGTTTCACGTTGATGTC
GGCTCGTGTGTCTCTGTGCCGCTCAACTCAACCGAGAGAACAAAAGCCGT
GAAGATGGACAGTGCATGTGCTGTAGCACGATGGGAGTGCGGAAGGGGAG
CGGTCGTATTCGCTTGCTGGTTGATCGTGTGTCTCTATTCCACTCATCTC
AGCCGAGATAGCAAGATCCGTGGAGAACGACAGCAGTGCACCCCCCGCGA
TCGATTTCTCCGAGCCCTCATCATCAGGAACAGGTAGCTTATCAACGTCT
TTAG
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Coding sequence (CDS) from alignment at Scaffold_129:840926..842879+

>EsuBft997_6a-0001 ID=EsuBft997_6a-0001|Name=EsuBft997_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=420bp|location=Sequence derived from alignment at Scaffold_129:840926..842879+ (Ectocarpus subulatus male Bft15b)
ATGAGCCGAGAGTTGAGCCTCGAGATCTCTCAGTCTACGGGAAGTCCATC
TATGAAGGAAGCGAAAGCAGCCGCCGCCCCGGAAACAAACCAAGAAGACG
AGGCCCAGGAAGAGAGCGCTTCCAACGTTCTCCGGAGATTATCCTCCCCG
ATCTTCGGCGCGGCCGGCTTCAACTCGGACAGCAAGGACAGCAACCACAG
TGACGGTGACTTCAACATCAACGAAGAGTCGAGGGGTGATGACGACGGCA
GCGATGACGAGGAGGAGACGGAGCGCAAGGAAGGCGCCGCCGAGGTGGTT
CAGCGGTGGTGGCGGGAGTGCCGGCGCGCGTCGAAGCGCACCAGGGCCGT
GGTTGCGGCGAGACCTGCGTTCGTTCGAATCCAGCAGCTCTTTGACAAGG
TAGCTTATCAACGTCTTTAG
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