EsuBft997_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft997_4a-0001
Unique NameEsuBft997_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:865343..868291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIW0
ProteomeIdEsuBft997_4
Protein domainsIPR015655
Protein domainsIPR001932
Ownerapollo_admin@sb-roscoff.fr
Noteprotein phosphatase 1b os:rattus norvegicus gn:ppm1b pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1795
Hectar predicted targeting categoryother localisation
Evalue5.11e-180
EggNOG OGsCOG0631@1|root,KOG0697@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K04457,ko:K04461
KEGG Pathwayko04010,ko04013,map04010,map04013
EC3.1.3.16
Descriptionmanganese ion binding
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Cross References
External references for this mRNA
DatabaseAccession
GO0004721
GO0031227
GO0034645
GO0007166
GO0043122
GO0004571
GO0044424
GO0016311
GO0009968
EC3.1.3.18
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft997_4aEsuBft997_4aEctocarpus subulatus male Bft15bgeneScaffold_129 865343..868291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_4a-0001EsuBft997_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 866021..868269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_4a-0001-exonagat-exon-86276Ectocarpus subulatus male Bft15bexonScaffold_129 865343..866863 -
EsuBft997_4a-0001-exonEsuBft997_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 867750..867884 -
EsuBft997_4a-0001-exonagat-exon-86277Ectocarpus subulatus male Bft15bexonScaffold_129 868153..868291 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_4a-0001-exonagat-three_prime_utr-23902Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 865343..866020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_4a-0001-cdsEsuBft997_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 866021..866863 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_4a-0001-exonagat-five_prime_utr-15590Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 868270..868291 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft997_4a-0001 ID=EsuBft997_4a-0001|Name=EsuBft997_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1795bp|location=Sequence derived from alignment at Scaffold_129:865343..868291- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCGGGGGCCGTCAGTTGCCCATGTCGGTGGACCACAAGCCCGGCCGCA
AGGCTGAGAGCAGGAGGATTCTGCGCAGCGGGGGCTATCTGGATGAGACG
GACCCCCGAAACCCACGTGTGGTTTGCGACACCCTCAAGATGTCGATCGC
CACGAGCCGTGCACTCGGAGACTTCGACTTCAAGTCCAACCCGTCCAGGC
TGCCGGAGGAGCAGATGGTCAGCCCAGTGCCGGAGTTGTACACGAGGCGG
AGGCGAGTCCTACAGGAGAAACACGCGGCCTGCCTCGCCCGAGGGGAAGA
GATCTACGGAGAAACCGGAGACACCGGAGAAACCGACAGCGAGTTGCTCG
CGAGGTCCGTCCTGAAGCGCTGCCTGGACCTCGGCTCCCGCGACAACATG
ACCATCGTTCTCGCGGACCTAAGACGGCGGCGGCGGAGGGCAAGGCCGAA
GGTACCACCGCGAAAGCTGTCGCCGACGATAGGAGAGGGTCACGGCGGTG
ACGAAGAACGGGGGGGGGTGGCGGCTGCGATCGGGGCACACCGGGTCGGG
AATCGTGGCGGCACCGAGGCGGCACCAACGGTAGCAGCAGCGGCGACAAC
AACAGCGGGTGCTGGAGACAAAGGAGACTTGGGCCCTAGCATGAGGGTTG
GTAGTGGTGACAGTAGCGTTGGTGGTAGCGCGGTATCCGTGTCGACGGGA
GGGGGTGACCCCGCTGTACACGGCTCGGTAGCAGCAGCTGCAGCGGAGGC
GGGAGTGGACACAGGAGAAGCGTTGCGCCAGGACGGCGGTGGCGACGGCG
TGGGTGCGAGCGATGGATCTTATCTGGCGGGGCACGTCGGCGACGGCCGG
GGTGGGTCGTCGGGAACGCGCCCGGGAGAGTCAGCGGGCGTGTCAGGGCT
GACGGCGGGAGGCGGTGGCGTAAATAATACCTCAAAAATCGCGGCAGAGC
CCGATGGCGTTGCTGTCATCGGGGTTGTAGGCGTTTCGGGAGAAACCATC
ACCGGAGGCGCGGCGGCTGTAGTCGAAGGCGATGGCGTCGGAGAGGCCCT
GACCGCGCGGGAGGCCGGCGGGTTGCCGCGGCCACCAGAAGCGGTAGACG
GCAACCAAGAGCGGTAGCATCGGTGATGAAGGTTTTCAAGGAGGCGGATT
CAATTGATGCCAAGATTGCTTCCTGAAGGAAGGGAAGTAATCCCAAACTC
TTGGTAGCCGTGTTCACCACAGCGCACCAAGTGTGCCAGTAGATTTGTTG
TTGTTAGGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGTGTACTCATAG
TCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCC
GGGACGGAGCACGCCGNTTGTCAAGACCAGCCGCGGGATTCGCATGCCCG
TCTACTCCGTTAACGCCCGATTTTTTCGCGTACAGTAGCTGCTCCAGGGC
GGTACAAGATGGCACGGAACTGTCCGACGCCCAGAAACCAGAGGCTTGTT
GGGGAGCACATTGAGACAGCAGTGGCAAACTTGCTCAGGAGCGTATGCTG
CAACCCCACCCACCCCCTTGGCACCCGGCAACACTTTCATCTAGACGCTG
ACGTCATTCAAGTCGTAATGTAGTACCCTCGTTGCAGCTCTGATGAGTTG
TTGCAGAGAGAGGGACGTGGGTGTTCTTAGCTGTTGTGGTTTTCATTGTT
TTGGTTGACTCTCCGTTTTCCCATTCCCGCGCTTTTCTAAGGCGTAGTGT
TTCGTTTTGCCCGGCCCCTCCGTGCGGACGCGCTTGGTGATGTGA
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protein sequence of EsuBft997_4a-0001

>EsuBft997_4 ID=EsuBft997_4|Name=EsuBft997_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=364bp
MSVDHKPGRKAESRRILRSGGYLDETDPRNPRVVCDTLKMSIATSRALGD
FDFKSNPSRLPEEQMVSPVPELYTRRRRVLQEKHAACLARGEEIYGETGD
TGETDSELLARSVLKRCLDLGSRDNMTIVLADLRRRRRRARPKVPPRKLS
PTIGEGHGGDEERGGVAAAIGAHRVGNRGGTEAAPTVAAAATTTAGAGDK
GDLGPSMRVGSGDSSVGGSAVSVSTGGGDPAVHGSVAAAAAEAGVDTGEA
LRQDGGGDGVGASDGSYLAGHVGDGRGGSSGTRPGESAGVSGLTAGGGGV
NNTSKIAAEPDGVAVIGVVGVSGETITGGAAAVVEGDGVGEALTAREAGG
LPRPPEAVDGNQER
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mRNA from alignment at Scaffold_129:865343..868291-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft997_4a-0001 ID=EsuBft997_4a-0001|Name=EsuBft997_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2949bp|location=Sequence derived from alignment at Scaffold_129:865343..868291- (Ectocarpus subulatus male Bft15b)
CCGCGGGGGCCGTCAGTTGCCCATGTCGGTGGACCACAAGCCCGGCCGCA
AGGCTGAGAGCAGGAGGATTCTGCGCAGCGGGGGCTATCTGGATGAGACG
GACCCCCGAAACCCACGTGTGGTTTGCGACACCCTCAAGGTGAGTGGGCG
CAAAAAGAAGGTCGAGGCGTCTTTCGTCACCCGGCGGGAGAAGTAGGGCA
ACGAAGGTGTCATGTCACCCTTGCTCTTGACCTCTCTGCGGCGTATTTGT
CGGGGCTCACACTTACATACATGCCCGTTTGAAATATTGTTTTATGTCGG
CACTTGTACCCGTGTGAAGAAGTGTTCTTCTCCAACACACGCCTTGAAAA
ATTGGCGCTTTTGGTCCCTAGTTTGAGCGTTTTGAACGTGATGGTGGCAT
GTAACAGATGTCGATCGCCACGAGCCGTGCACTCGGAGACTTCGACTTCA
AGTCCAACCCGTCCAGGCTGCCGGAGGAGCAGATGGTCAGCCCAGTGCCG
GAGTTGTACACGAGGCGGAGGCGAGTCCTACAGGAGAAACACGTTAATAC
TTTATCTTTTAGGGTAGTTGGCCGTGTGACCACGGGAGGCGTCCGCGTCA
GCTGGACGAGTGCGGACAGTAGAAGGTACTGGGAGCAGCCCGGAATGTTT
CTTTATGTGAAGATAACAACTGTTGACGCCAGTTTTGCTTTCATCGCTGT
CTCTCGGTGGTTTCCACCTGTAGCCCTTGCCGTCTTGATTTCTCGGCTTT
AGAGCTCTGGCCCGGGGTGACATTCCCGGACTTTCTTTTTCCGACGCGTG
CCTTGGTTTGCTCTTGTCACCCGAAGGTCTCCGGCCTCAGCACTTCCTTG
CCTAAAGCCGTTTGTGCAAATAACGCCAAGTGTGTGGTGCTCGCGTTTCC
AACGAGTAGCTGACTTATCTGTTTGCTCGCCCCTCTTCGTAACTCTGCTA
TCTCTCCCTCTCTCGCCCCCCCCTCCCCCCCTGTCCAGAGATCCTCATGA
CGAGTTCCTTATTCTGGCCACGGACGGTGTTTGGGACGTGATGGACAACC
CTGGGATCGTGAGCTTCTTGCAGACACAGGCGAGACATTTGGACGTGGTT
GTCCACTTTGCTGCTGCGCCAACAACCGCACTCGCGCGCTTTTTGCCCAG
ACCCAAATGTGTTTGATCTGTGTCTTGTTGAGTTAGGTCGACCGCACCAA
TCGGTTGACGAATGAAAGGACGTCTTTTGACTCAACTGACACTTCGACGT
GCAGCACTGTCGCAAACACTCGCGTTTTGCGTTGTTCTTGCGTGCCCCGC
CCAACCTTAATTTCTATAATTTTTCATCATGTCACGACAAATCCATCATA
TCTTCTCCACAGAAAACAGTCCGGGATTGATTAAATAATGAATTCACAGC
ATCACTCATTTTCCGCGAAAAACAACAGGCGGCCTGCCTCGCCCGAGGGG
AAGAGATCTACGGAGAAACCGGAGACACCGGAGAAACCGACAGCGAGTTG
CTCGCGAGGTCCGTCCTGAAGCGCTGCCTGGACCTCGGCTCCCGCGACAA
CATGACCATCGTTCTCGCGGACCTAAGACGGCGGCGGCGGAGGGCAAGGC
CGAAGGTACCACCGCGAAAGCTGTCGCCGACGATAGGAGAGGGTCACGGC
GGTGACGAAGAACGGGGGGGGGTGGCGGCTGCGATCGGGGCACACCGGGT
CGGGAATCGTGGCGGCACCGAGGCGGCACCAACGGTAGCAGCAGCGGCGA
CAACAACAGCGGGTGCTGGAGACAAAGGAGACTTGGGCCCTAGCATGAGG
GTTGGTAGTGGTGACAGTAGCGTTGGTGGTAGCGCGGTATCCGTGTCGAC
GGGAGGGGGTGACCCCGCTGTACACGGCTCGGTAGCAGCAGCTGCAGCGG
AGGCGGGAGTGGACACAGGAGAAGCGTTGCGCCAGGACGGCGGTGGCGAC
GGCGTGGGTGCGAGCGATGGATCTTATCTGGCGGGGCACGTCGGCGACGG
CCGGGGTGGGTCGTCGGGAACGCGCCCGGGAGAGTCAGCGGGCGTGTCAG
GGCTGACGGCGGGAGGCGGTGGCGTAAATAATACCTCAAAAATCGCGGCA
GAGCCCGATGGCGTTGCTGTCATCGGGGTTGTAGGCGTTTCGGGAGAAAC
CATCACCGGAGGCGCGGCGGCTGTAGTCGAAGGCGATGGCGTCGGAGAGG
CCCTGACCGCGCGGGAGGCCGGCGGGTTGCCGCGGCCACCAGAAGCGGTA
GACGGCAACCAAGAGCGGTAGCATCGGTGATGAAGGTTTTCAAGGAGGCG
GATTCAATTGATGCCAAGATTGCTTCCTGAAGGAAGGGAAGTAATCCCAA
ACTCTTGGTAGCCGTGTTCACCACAGCGCACCAAGTGTGCCAGTAGATTT
GTTGTTGTTAGGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGTGTACTC
ATAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAA
AGCCGGGACGGAGCACGCCGNTTGTCAAGACCAGCCGCGGGATTCGCATG
CCCGTCTACTCCGTTAACGCCCGATTTTTTCGCGTACAGTAGCTGCTCCA
GGGCGGTACAAGATGGCACGGAACTGTCCGACGCCCAGAAACCAGAGGCT
TGTTGGGGAGCACATTGAGACAGCAGTGGCAAACTTGCTCAGGAGCGTAT
GCTGCAACCCCACCCACCCCCTTGGCACCCGGCAACACTTTCATCTAGAC
GCTGACGTCATTCAAGTCGTAATGTAGTACCCTCGTTGCAGCTCTGATGA
GTTGTTGCAGAGAGAGGGACGTGGGTGTTCTTAGCTGTTGTGGTTTTCAT
TGTTTTGGTTGACTCTCCGTTTTCCCATTCCCGCGCTTTTCTAAGGCGTA
GTGTTTCGTTTTGCCCGGCCCCTCCGTGCGGACGCGCTTGGTGATGTGA
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Coding sequence (CDS) from alignment at Scaffold_129:865343..868291-

>EsuBft997_4a-0001 ID=EsuBft997_4a-0001|Name=EsuBft997_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1095bp|location=Sequence derived from alignment at Scaffold_129:865343..868291- (Ectocarpus subulatus male Bft15b)
ATGTCGGTGGACCACAAGCCCGGCCGCAAGGCTGAGAGCAGGAGGATTCT
GCGCAGCGGGGGCTATCTGGATGAGACGGACCCCCGAAACCCACGTGTGG
TTTGCGACACCCTCAAGATGTCGATCGCCACGAGCCGTGCACTCGGAGAC
TTCGACTTCAAGTCCAACCCGTCCAGGCTGCCGGAGGAGCAGATGGTCAG
CCCAGTGCCGGAGTTGTACACGAGGCGGAGGCGAGTCCTACAGGAGAAAC
ACGCGGCCTGCCTCGCCCGAGGGGAAGAGATCTACGGAGAAACCGGAGAC
ACCGGAGAAACCGACAGCGAGTTGCTCGCGAGGTCCGTCCTGAAGCGCTG
CCTGGACCTCGGCTCCCGCGACAACATGACCATCGTTCTCGCGGACCTAA
GACGGCGGCGGCGGAGGGCAAGGCCGAAGGTACCACCGCGAAAGCTGTCG
CCGACGATAGGAGAGGGTCACGGCGGTGACGAAGAACGGGGGGGGGTGGC
GGCTGCGATCGGGGCACACCGGGTCGGGAATCGTGGCGGCACCGAGGCGG
CACCAACGGTAGCAGCAGCGGCGACAACAACAGCGGGTGCTGGAGACAAA
GGAGACTTGGGCCCTAGCATGAGGGTTGGTAGTGGTGACAGTAGCGTTGG
TGGTAGCGCGGTATCCGTGTCGACGGGAGGGGGTGACCCCGCTGTACACG
GCTCGGTAGCAGCAGCTGCAGCGGAGGCGGGAGTGGACACAGGAGAAGCG
TTGCGCCAGGACGGCGGTGGCGACGGCGTGGGTGCGAGCGATGGATCTTA
TCTGGCGGGGCACGTCGGCGACGGCCGGGGTGGGTCGTCGGGAACGCGCC
CGGGAGAGTCAGCGGGCGTGTCAGGGCTGACGGCGGGAGGCGGTGGCGTA
AATAATACCTCAAAAATCGCGGCAGAGCCCGATGGCGTTGCTGTCATCGG
GGTTGTAGGCGTTTCGGGAGAAACCATCACCGGAGGCGCGGCGGCTGTAG
TCGAAGGCGATGGCGTCGGAGAGGCCCTGACCGCGCGGGAGGCCGGCGGG
TTGCCGCGGCCACCAGAAGCGGTAGACGGCAACCAAGAGCGGTAG
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