EsuBft997_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft997_3a-0001
Unique NameEsuBft997_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:878095..879015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft997_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length92
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft997_3aEsuBft997_3aEctocarpus subulatus male Bft15bgeneScaffold_129 878095..879015 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_3a-0001-exonEsuBft997_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 878095..879015 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_3a-0001-exonagat-three_prime_utr-23901Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 878095..878409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_3a-0001-cdsEsuBft997_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 878410..878565 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_3a-0001-exonagat-five_prime_utr-15589Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 878566..879015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft997_3a-0001EsuBft997_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 878410..878565 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft997_3a-0001 ID=EsuBft997_3a-0001|Name=EsuBft997_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=921bp|location=Sequence derived from alignment at Scaffold_129:878095..879015- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCTCCTCGTCCTTGTTGGCGCGCTCCGCGGTCGTGACCTCCGCTTG
CTGTTGGTCTCGCCGCTGCCGCCCCCGCGGCGGCGGCTACTTCCGCTGCT
GCTGCTGCGAGTTGTGCCGGTGTTGCTGCCCCTGTTGCGGCCTCTGGTGC
CGCTGATATTGCCGGTGCTGTTGATGCTGGTACTGACCCCTCACCTATTG
GAGAGGATAGCTCTGCTGGAGCTGCCCCCCCGCGTGCTTGGGAGGCTTCA
TGAGCACGGATTTTTACCCTTGCCTTTGCTGGGAGGGTGCGGGACGGGTA
CCGACGCCACTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTGCTGCTGTT
GCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGT
TGTTACGAGCTCTGTTGGTGCTGTTGCGGATCCTTCTCCTACGGTTAAGA
ATGATGGTGCCCGAGCTTCTTCTCCATCTACTCGAGAGTGGTCACCCTCA
TCGTCCAAGCGAGGAGGCGACTGCTGTTGTGTACCGGCGGGAGGTGGAGT
GGACTCGCCTATGGTTGGTGCCGCCGTGCTTGATGAACCACCAGAACCCC
CACTAACGTCGACATCGCCAGCGGATGACGCGCTCCTAGCATCCGCACTG
CTTCCCTCCCCACTTTGGTCTTCACTCACCCGTGGCCGCTTTGATGATGG
CTGGGCTTGCGGGTGCCGGGAAAGCATCCTTGCGAACGCGGCCGCCTGGT
TCTTCTGCTGCGCAGCTATCCTCTCCTCTCCGCATTTGTCTTCCGACCCG
CTTTTTGTGCGCCATCCTTGGGTTTTGATCCTGGATTTCGCCCCATGGGG
AGCGCTGGCTCCACGGTTGCTGTGGGAGAGCTGTTGTGCTTGCCGTCGTG
GTCTGTGTTGTGTGTTGTCAT
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protein sequence of EsuBft997_3a-0001

>EsuBft997_3 ID=EsuBft997_3|Name=EsuBft997_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MMVPELLLHLLESGHPHRPSEEATAVVYRREVEWTRLWLVPPCLMNHQNP
H
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mRNA from alignment at Scaffold_129:878095..879015-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft997_3a-0001 ID=EsuBft997_3a-0001|Name=EsuBft997_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=921bp|location=Sequence derived from alignment at Scaffold_129:878095..879015- (Ectocarpus subulatus male Bft15b)
CCCCCCTCCTCGTCCTTGTTGGCGCGCTCCGCGGTCGTGACCTCCGCTTG
CTGTTGGTCTCGCCGCTGCCGCCCCCGCGGCGGCGGCTACTTCCGCTGCT
GCTGCTGCGAGTTGTGCCGGTGTTGCTGCCCCTGTTGCGGCCTCTGGTGC
CGCTGATATTGCCGGTGCTGTTGATGCTGGTACTGACCCCTCACCTATTG
GAGAGGATAGCTCTGCTGGAGCTGCCCCCCCGCGTGCTTGGGAGGCTTCA
TGAGCACGGATTTTTACCCTTGCCTTTGCTGGGAGGGTGCGGGACGGGTA
CCGACGCCACTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTGCTGCTGTT
GCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGT
TGTTACGAGCTCTGTTGGTGCTGTTGCGGATCCTTCTCCTACGGTTAAGA
ATGATGGTGCCCGAGCTTCTTCTCCATCTACTCGAGAGTGGTCACCCTCA
TCGTCCAAGCGAGGAGGCGACTGCTGTTGTGTACCGGCGGGAGGTGGAGT
GGACTCGCCTATGGTTGGTGCCGCCGTGCTTGATGAACCACCAGAACCCC
CACTAACGTCGACATCGCCAGCGGATGACGCGCTCCTAGCATCCGCACTG
CTTCCCTCCCCACTTTGGTCTTCACTCACCCGTGGCCGCTTTGATGATGG
CTGGGCTTGCGGGTGCCGGGAAAGCATCCTTGCGAACGCGGCCGCCTGGT
TCTTCTGCTGCGCAGCTATCCTCTCCTCTCCGCATTTGTCTTCCGACCCG
CTTTTTGTGCGCCATCCTTGGGTTTTGATCCTGGATTTCGCCCCATGGGG
AGCGCTGGCTCCACGGTTGCTGTGGGAGAGCTGTTGTGCTTGCCGTCGTG
GTCTGTGTTGTGTGTTGTCAT
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Coding sequence (CDS) from alignment at Scaffold_129:878095..879015-

>EsuBft997_3a-0001 ID=EsuBft997_3a-0001|Name=EsuBft997_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_129:878095..879015- (Ectocarpus subulatus male Bft15b)
ATGATGGTGCCCGAGCTTCTTCTCCATCTACTCGAGAGTGGTCACCCTCA
TCGTCCAAGCGAGGAGGCGACTGCTGTTGTGTACCGGCGGGAGGTGGAGT
GGACTCGCCTATGGTTGGTGCCGCCGTGCTTGATGAACCACCAGAACCCC
CACTAA
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