EsuBft996_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft996_8a-0001
Unique NameEsuBft996_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:20510..22856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LDH3
ProteomeIdEsuBft996_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length201
Hectar predicted targeting categoryother localisation
Evalue1.57e-05
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EC3.2.1.37
Descriptionprotein xylosyltransferase activity
COG categoryU
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft996_8aEsuBft996_8aEctocarpus subulatus male Bft15bgeneScaffold_523 20510..22856 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft996_8a-0001-exonEsuBft996_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 20510..20881 +
EsuBft996_8a-0001-exonagat-exon-53033Ectocarpus subulatus male Bft15bexonScaffold_523 21211..22856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft996_8a-0001-cdsEsuBft996_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 20510..20734 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft996_8a-0001-exonagat-three_prime_utr-23898Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 20735..20881 +
EsuBft996_8a-0001-exonagat-three_prime_utr-23899Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 21211..22856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft996_8a-0001EsuBft996_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 20510..20734 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft996_8a-0001 ID=EsuBft996_8a-0001|Name=EsuBft996_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2018bp|location=Sequence derived from alignment at Scaffold_523:20510..22856+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGTACCAGCACGAGGGCAAGCCGGATGACATACCAAAGGGCAC
CAAGTACCTGGGCTGCTTTGCGGACAAACCCAGCGATAGGGCGCTCAAGC
TCAAATTCACCACAACCTCCAAAATGGACTACGATGCGAGTATCATCATT
GATGTTTCCCAGTTTGCTCTTCGGATTGCCTTTGGTTCTGTGTATCGTAT
AGGCAGCGCTCTTCTTGTCTGCTGATGCACATATACAGAACGATTGATTG
ATGCTTTTCCTCGGAGGATGATGTTGTTGGTCTTCGTATGACGCAAATGA
AACTGGTACTATGCATACATGTTCCGCGCTGTTTCAGGCGTGTAAGAAGA
TATGTGACAAGGAGGACGCAAGGTGCTTCTGCGGTGCACGGAAAGAGGAC
TACAACAAACATGGACCCGCCATCTGTCACATGAAGTGCCCAGGCGACTC
GGACTTGGTGTGTGGTGGTGACAGGGCTCAAAACGTGTTCCTCATAAAGT
CCTAACAGGTTGCGATCACCCTGAGGGGCCCGCTGGCCACATCGAGATGT
CTGCAGGGGTGCGAGTCCACCGGACTGCGCATGCATGCACGCGTGCGCCC
CCTTAGAGTTGCTCGCGAAGCTGTGTGGACAGGAACAAGTTTTACTCGCG
GGAGTGAGTCTCTCTGCATGTGCGAGACCTGAGGATGTTCGTAGACGCGC
CGCCGTTGGTAGGTGGGAAACAAGGAAGTACACTTTTTGGAACGAAGCCG
TGTACTTTGTTCCTTCGGACCATTTGAACGAGGCTCGCGGCACGGCGCGA
CCCACCAGTCACCTTCGATCTTCCTGTGCTTCAACTTTCGTATCCCTGCA
ATTCCAACGCATGTTGAAGGGCATGGCGTATTGTGCGATTGGCTGGCGGT
GTTACTTGTCTTCGCAGAGTTTTCGTGCGGTGCGATGGGCTGATGTTGCC
CGTACCGTCTACGTCACCCATTGTATAGCGGTCGTTTCAGTCATTGCCGA
AGCAGACACGGTGCAGGGCGTCGACGGCTAGACTTTTCTGCAGCCCCTCG
GTCAGGAACGGCGTTCGAAGTTTTGATACGGGTCGAAACTTCTTGGAACT
GGATAATTGCCGCATGAATTGTGTATTGTATGTCTTGATGATTTCCTCTT
CCCACCCGCTGCCACGGCGATGTTCGTATCGGTACACCCACACTCATGGC
AGCAGTATTTATAATAGTAGTTCAAATTGCTTTCGCATCCTCATTCTTGT
TGTCCATCACCCATCCATGCAGACCGCTCATGTCGCACTTCCCACCTGAT
AGTACCGAATTTCGCCGTTCTGCGTGCCAACAGCGGTTGCGCGACATTGT
AGATGAAGGGGGATTGGTGACTTCTGAGAGAGGGCACAAGAAGGGGGATG
AAGATAAACCGCAGAGCAGAGGAATATAAGATTAGGTATACATGCAAATT
TCATACTGGGTCTACAGTTTTCTCGATGGCATTATGTTCTGTTGCTTACC
GGGTTTGTTTCTTTCTTGCGGCTTGGATCTTTGGACATCGAACTCACATG
TAACTTAGTATTGTTTTTCGAGGATGGGCATGCTTGTATGCACTGTGCGG
CGATCTTCCCCACCCTACTCAATCGTACGCTTTGCGTTCACAAGGTGGAG
GACCTCGGTACATAGTCTTGATATTGCGTGTGTGAGTGGGCGGTTTGTGT
TGTGGGGGCGAGAATTTCCTCTTTGCAAGCGCCCAACCCCGCCCATTCAA
TAAACTTGATCATGGGGTTTGTCATATTTTCGTCTTGGATCGATGAGGTT
CGCTAGGCTCTTCCGAGTAAGAATACGTTCGCTGTGTGAGCTGCTGAGCC
TGAGAAACTTCACACCGCAGCTTGCAGCTGGCTGTGGGTTGGTGATTAAC
CCTGCTGTTACTGTCACCTTGCATCACCCCTTGATGGCATTCTGCTCTCA
TGCGGCGAGCTCACGTATGGTTTCTACATTCAGTCAGTATTAAACATCGG
CTGGCTGGCCTGGTCTGA
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protein sequence of EsuBft996_8a-0001

>EsuBft996_8 ID=EsuBft996_8|Name=EsuBft996_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MDVYQHEGKPDDIPKGTKYLGCFADKPSDRALKLKFTTTSKMDYDASIII
DVSQFALRIAFGSVYRIGSALLVC
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mRNA from alignment at Scaffold_523:20510..22856+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft996_8a-0001 ID=EsuBft996_8a-0001|Name=EsuBft996_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2347bp|location=Sequence derived from alignment at Scaffold_523:20510..22856+ (Ectocarpus subulatus male Bft15b)
ATGGACGTGTACCAGCACGAGGGCAAGCCGGATGACATACCAAAGGGCAC
CAAGTACCTGGGCTGCTTTGCGGACAAACCCAGCGATAGGGCGCTCAAGC
TCAAATTCACCACAACCTCCAAAATGGACTACGATGCGAGTATCATCATT
GATGTTTCCCAGTTTGCTCTTCGGATTGCCTTTGGTTCTGTGTATCGTAT
AGGCAGCGCTCTTCTTGTCTGCTGATGCACATATACAGAACGATTGATTG
ATGCTTTTCCTCGGAGGATGATGTTGTTGGTCTTCGTATGACGCAAATGA
AACTGGTACTATGCATACATGTTCCGCGCTGTTTCAGGCGTGTAAGAAGA
TATGTGACAAGGAGGACGCAAGGTACTTCGCACTCCAATACGGCCAAGAG
TGAGTTGAAGATGTCGGCAATACCGCCGTGTTGTTGTTGTCATCGTTCGT
CGTCAGTGATGGTGGAGACGCTGCCATTGTTGTAACGGTCACTGCCGCGG
GTGTCGGTTTAGTTTCTGCCGCTGTTGTCGGTGTTGCCGCTGCAAGCCGA
CCTCAACATTGAGTCAACAATGGCATGCAGCGTATTGAATTCAGATATTT
CTGTGTACCATGCATACGGTGCTGTTGTCTCCTGTATTCACGTTTCCCCG
CAGCCAAATTGCGCGATCTTTTTTCCTTGCATTTTCAAATGTACCCGCAA
GGTGCTTCTGCGGTGCACGGAAAGAGGACTACAACAAACATGGACCCGCC
ATCTGTCACATGAAGTGCCCAGGCGACTCGGACTTGGTGTGTGGTGGTGA
CAGGGCTCAAAACGTGTTCCTCATAAAGTCCTAACAGGTTGCGATCACCC
TGAGGGGCCCGCTGGCCACATCGAGATGTCTGCAGGGGTGCGAGTCCACC
GGACTGCGCATGCATGCACGCGTGCGCCCCCTTAGAGTTGCTCGCGAAGC
TGTGTGGACAGGAACAAGTTTTACTCGCGGGAGTGAGTCTCTCTGCATGT
GCGAGACCTGAGGATGTTCGTAGACGCGCCGCCGTTGGTAGGTGGGAAAC
AAGGAAGTACACTTTTTGGAACGAAGCCGTGTACTTTGTTCCTTCGGACC
ATTTGAACGAGGCTCGCGGCACGGCGCGACCCACCAGTCACCTTCGATCT
TCCTGTGCTTCAACTTTCGTATCCCTGCAATTCCAACGCATGTTGAAGGG
CATGGCGTATTGTGCGATTGGCTGGCGGTGTTACTTGTCTTCGCAGAGTT
TTCGTGCGGTGCGATGGGCTGATGTTGCCCGTACCGTCTACGTCACCCAT
TGTATAGCGGTCGTTTCAGTCATTGCCGAAGCAGACACGGTGCAGGGCGT
CGACGGCTAGACTTTTCTGCAGCCCCTCGGTCAGGAACGGCGTTCGAAGT
TTTGATACGGGTCGAAACTTCTTGGAACTGGATAATTGCCGCATGAATTG
TGTATTGTATGTCTTGATGATTTCCTCTTCCCACCCGCTGCCACGGCGAT
GTTCGTATCGGTACACCCACACTCATGGCAGCAGTATTTATAATAGTAGT
TCAAATTGCTTTCGCATCCTCATTCTTGTTGTCCATCACCCATCCATGCA
GACCGCTCATGTCGCACTTCCCACCTGATAGTACCGAATTTCGCCGTTCT
GCGTGCCAACAGCGGTTGCGCGACATTGTAGATGAAGGGGGATTGGTGAC
TTCTGAGAGAGGGCACAAGAAGGGGGATGAAGATAAACCGCAGAGCAGAG
GAATATAAGATTAGGTATACATGCAAATTTCATACTGGGTCTACAGTTTT
CTCGATGGCATTATGTTCTGTTGCTTACCGGGTTTGTTTCTTTCTTGCGG
CTTGGATCTTTGGACATCGAACTCACATGTAACTTAGTATTGTTTTTCGA
GGATGGGCATGCTTGTATGCACTGTGCGGCGATCTTCCCCACCCTACTCA
ATCGTACGCTTTGCGTTCACAAGGTGGAGGACCTCGGTACATAGTCTTGA
TATTGCGTGTGTGAGTGGGCGGTTTGTGTTGTGGGGGCGAGAATTTCCTC
TTTGCAAGCGCCCAACCCCGCCCATTCAATAAACTTGATCATGGGGTTTG
TCATATTTTCGTCTTGGATCGATGAGGTTCGCTAGGCTCTTCCGAGTAAG
AATACGTTCGCTGTGTGAGCTGCTGAGCCTGAGAAACTTCACACCGCAGC
TTGCAGCTGGCTGTGGGTTGGTGATTAACCCTGCTGTTACTGTCACCTTG
CATCACCCCTTGATGGCATTCTGCTCTCATGCGGCGAGCTCACGTATGGT
TTCTACATTCAGTCAGTATTAAACATCGGCTGGCTGGCCTGGTCTGA
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Coding sequence (CDS) from alignment at Scaffold_523:20510..22856+

>EsuBft996_8a-0001 ID=EsuBft996_8a-0001|Name=EsuBft996_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_523:20510..22856+ (Ectocarpus subulatus male Bft15b)
ATGGACGTGTACCAGCACGAGGGCAAGCCGGATGACATACCAAAGGGCAC
CAAGTACCTGGGCTGCTTTGCGGACAAACCCAGCGATAGGGCGCTCAAGC
TCAAATTCACCACAACCTCCAAAATGGACTACGATGCGAGTATCATCATT
GATGTTTCCCAGTTTGCTCTTCGGATTGCCTTTGGTTCTGTGTATCGTAT
AGGCAGCGCTCTTCTTGTCTGCTGA
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