EsuBft996_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft996_2a-0001
Unique Name	EsuBft996_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:88241..89339 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft996_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	109
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft996_2a	EsuBft996_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 88241..89339 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft996_2a-0001-exon	EsuBft996_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 88241..89339 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft996_2a-0001-exon	agat-three_prime_utr-23891	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 88241..88763 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft996_2a-0001-cds	EsuBft996_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 88764..89339 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft996_2a-0001	EsuBft996_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 88764..89339 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:88241..89339-
coding sequence from alignment at Scaffold_523:88241..89339-

spliced messenger RNA

>EsuBft996_2a-0001 ID=EsuBft996_2a-0001|Name=EsuBft996_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1099bp|location=Sequence derived from alignment at Scaffold_523:88241..89339- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACCTGGGGGGAATATTTAAGGACATGATTACCGCCTCCGATCC
CGACGGGACGAAGATGCAATTGTCTGTGGGGGAAGGGGAGGGCGTGACAA
TATCCCGTTGGGTGGAACAGGAGTTGAACAATATTTCCGAGATAACCCCA
ATCGGGAGAAGCACGGCAACCTTCATCGAGGATAATCGAACGAATCCGGT
GTTGGTCTACCCCTACATTCACAGTATGGCTCAGATAGGATCCCTGGTCG
GCAACTTGCACGCGGACATAGAAACGGCACGAGCAGAGGTGCGGCGGCTG
AAGAGGGATTTGGCGCACGAGAGGGGCTCAAACGCGTCCAATAAGCCTGC
AGACATTGACACGGTACGCTTGGCGGCGGGCAAATTGCGGGAAGGCATCA
CGAACTACTCCTCGGAAAGCCAGGATGTTGTCTTCAACCAGAAACACGGC
CGAGCCCCGCTGGCGGCCATTGACCCGCTCGTAGAATGGCGAACATACGT
CCCCCCGCTGATGGTGGACTTCCTCAACGAGTTGGGTTACCAGCACGCCG
AGGTTGATGTCGAAGGCGATGCCTAAGAGAAACTCTTGAGGTCTCGGGCA
ACTCGGAAATGCCTCATGGCCGGGGTGTTGACATCGTTCGCGTTTAACAC
ATGGATATAAGAATGCCAACGCGATGGGCTTTTTCCTGAAGGGGCAAGGT
CTCCAAAGGGATGGGTTGGAATTTCTAGCAAGCATTTTTAAGATCACGCA
ATCGAACCGTCACCTGTGGGAAATGCGGACGAAGTTGGCGGATGTGCTCG
GTACAGAAGCCGAGATGAGGAAGCTTCACAGAATGTGGCGTCTTGCAGCA
GCGGAGGTGGCGGTGCCGCTGTAGCTCGTAGACTTTGTAGTCTACCACAG
AGGTTACACTGCTGTCACCGCTCTATCACAGAGGTTGGTCTACACTGCTG
TGAAATCGGTAGGCCCGAGCGAGCTTTGGAAAGAGAAATGCAGATAGATG
TTCTTATCAACTGACTCCCTGGTCAGGCTTTGATGGGTGCTAGATGAGAG
TGAGCACAAGGGGCGAAGGCGCGCTTGTGTCTCATCTCAACAACAAAAC

protein sequence of EsuBft996_2a-0001

>EsuBft996_2 ID=EsuBft996_2|Name=EsuBft996_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MSDLGGIFKDMITASDPDGTKMQLSVGEGEGVTISRWVEQELNNISEITP
IGRSTATFIEDNRTNPVLVYPYIHSMAQIGSLVGNLHADIETARAEVRRL
KRDLAHERGSNASNKPADIDTVRLAAGKLREGITNYSSESQDVVFNQKHG
RAPLAAIDPLVEWRTYVPPLMVDFLNELGYQHAEVDVEGDA

mRNA from alignment at Scaffold_523:88241..89339-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft996_2a-0001 ID=EsuBft996_2a-0001|Name=EsuBft996_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1099bp|location=Sequence derived from alignment at Scaffold_523:88241..89339- (Ectocarpus subulatus male Bft15b)
ATGTCCGACCTGGGGGGAATATTTAAGGACATGATTACCGCCTCCGATCC
CGACGGGACGAAGATGCAATTGTCTGTGGGGGAAGGGGAGGGCGTGACAA
TATCCCGTTGGGTGGAACAGGAGTTGAACAATATTTCCGAGATAACCCCA
ATCGGGAGAAGCACGGCAACCTTCATCGAGGATAATCGAACGAATCCGGT
GTTGGTCTACCCCTACATTCACAGTATGGCTCAGATAGGATCCCTGGTCG
GCAACTTGCACGCGGACATAGAAACGGCACGAGCAGAGGTGCGGCGGCTG
AAGAGGGATTTGGCGCACGAGAGGGGCTCAAACGCGTCCAATAAGCCTGC
AGACATTGACACGGTACGCTTGGCGGCGGGCAAATTGCGGGAAGGCATCA
CGAACTACTCCTCGGAAAGCCAGGATGTTGTCTTCAACCAGAAACACGGC
CGAGCCCCGCTGGCGGCCATTGACCCGCTCGTAGAATGGCGAACATACGT
CCCCCCGCTGATGGTGGACTTCCTCAACGAGTTGGGTTACCAGCACGCCG
AGGTTGATGTCGAAGGCGATGCCTAAGAGAAACTCTTGAGGTCTCGGGCA
ACTCGGAAATGCCTCATGGCCGGGGTGTTGACATCGTTCGCGTTTAACAC
ATGGATATAAGAATGCCAACGCGATGGGCTTTTTCCTGAAGGGGCAAGGT
CTCCAAAGGGATGGGTTGGAATTTCTAGCAAGCATTTTTAAGATCACGCA
ATCGAACCGTCACCTGTGGGAAATGCGGACGAAGTTGGCGGATGTGCTCG
GTACAGAAGCCGAGATGAGGAAGCTTCACAGAATGTGGCGTCTTGCAGCA
GCGGAGGTGGCGGTGCCGCTGTAGCTCGTAGACTTTGTAGTCTACCACAG
AGGTTACACTGCTGTCACCGCTCTATCACAGAGGTTGGTCTACACTGCTG
TGAAATCGGTAGGCCCGAGCGAGCTTTGGAAAGAGAAATGCAGATAGATG
TTCTTATCAACTGACTCCCTGGTCAGGCTTTGATGGGTGCTAGATGAGAG
TGAGCACAAGGGGCGAAGGCGCGCTTGTGTCTCATCTCAACAACAAAAC

Coding sequence (CDS) from alignment at Scaffold_523:88241..89339-

>EsuBft996_2a-0001 ID=EsuBft996_2a-0001|Name=EsuBft996_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_523:88241..89339- (Ectocarpus subulatus male Bft15b)
ATGTCCGACCTGGGGGGAATATTTAAGGACATGATTACCGCCTCCGATCC
CGACGGGACGAAGATGCAATTGTCTGTGGGGGAAGGGGAGGGCGTGACAA
TATCCCGTTGGGTGGAACAGGAGTTGAACAATATTTCCGAGATAACCCCA
ATCGGGAGAAGCACGGCAACCTTCATCGAGGATAATCGAACGAATCCGGT
GTTGGTCTACCCCTACATTCACAGTATGGCTCAGATAGGATCCCTGGTCG
GCAACTTGCACGCGGACATAGAAACGGCACGAGCAGAGGTGCGGCGGCTG
AAGAGGGATTTGGCGCACGAGAGGGGCTCAAACGCGTCCAATAAGCCTGC
AGACATTGACACGGTACGCTTGGCGGCGGGCAAATTGCGGGAAGGCATCA
CGAACTACTCCTCGGAAAGCCAGGATGTTGTCTTCAACCAGAAACACGGC
CGAGCCCCGCTGGCGGCCATTGACCCGCTCGTAGAATGGCGAACATACGT
CCCCCCGCTGATGGTGGACTTCCTCAACGAGTTGGGTTACCAGCACGCCG
AGGTTGATGTCGAAGGCGATGCCTAA