EsuBft995_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft995_9a-0001
Unique NameEsuBft995_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:79808..80456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G019
ProteomeIdEsuBft995_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length43
Hectar predicted targeting categoryother localisation
Evalue4.67e-46
EggNOG OGsCOG5657@1|root,KOG1993@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRan GTPase binding
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft995_9aEsuBft995_9aEctocarpus subulatus male Bft15bgeneScaffold_444 79808..80456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_9a-0001-exonEsuBft995_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 79808..80072 -
EsuBft995_9a-0001-exonagat-exon-15854Ectocarpus subulatus male Bft15bexonScaffold_444 80290..80456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_9a-0001-cdsEsuBft995_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 79808..80072 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_9a-0001-exonagat-five_prime_utr-15583Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 80436..80456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_9a-0001EsuBft995_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 79808..80435 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft995_9a-0001 ID=EsuBft995_9a-0001|Name=EsuBft995_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=432bp|location=Sequence derived from alignment at Scaffold_444:79808..80456- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGAGCGCGCAGCAAGTCTACATGGCTTTGCTCGAGGCGAGCGGCAACAA
CGTGGGTGGCGTCCTCGCTGCGGCAGTCGCCAACATGCTGTCGCAGGGCG
TTCAAGAACAGATCGAGACTTGCCGGCAAACTGCCATTAGGTGCGGCCAG
CGAATACGCGTCGCGAACCCTCAAGTGCTGGCGTGCGACGCCTTGTACCT
GTGTGCCGGTCTGGGTGCCTACACCGTCAAGGAGCATTTCGACTTCCAGG
CGTGGTTTCAGGCGTTTCTAGGGCCGGCGCTCGAAGCGCTTGTGGCGACA
ATGCAAGCCAGAGCGCTGCAGGTGAGCGGAGGAGAGGAGTCTGGTTTACG
CAGGAGTATTATTGTGGGCGAGGTGTCCGGAAAAACGTCCATCTCCTACC
TCCTACATCTATATCGTGGTTGTGGGTCTTGA
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protein sequence of EsuBft995_9a-0001

>EsuBft995_9 ID=EsuBft995_9|Name=EsuBft995_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MALLEASGNNVGGVLAAAVANMLSQGVQEQIETCRQTAIRCGQRIRVANP
QVLACDALYLCAGLGAYTVKEHFDFQAWFQAFLGPALEALVATMQARALQ
VSGGEESGLRRSIIVGEVSGKTSISYLLHLYRGCGS
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mRNA from alignment at Scaffold_444:79808..80456-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft995_9a-0001 ID=EsuBft995_9a-0001|Name=EsuBft995_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=649bp|location=Sequence derived from alignment at Scaffold_444:79808..80456- (Ectocarpus subulatus male Bft15b)
GTGAGCGCGCAGCAAGTCTACATGGCTTTGCTCGAGGCGAGCGGCAACAA
CGTGGGTGGCGTCCTCGCTGCGGCAGTCGCCAACATGCTGTCGCAGGGCG
TTCAAGAACAGATCGAGACTTGCCGGCAAACTGCCATTAGGTGCGGCCAG
CGAATACGCGTCGCGAAGTTAGTCTGACCGACAGCTCAATAGCGGCATGT
ACAACTTTCCCTCATACCTTTCGCTTTTACATGTTTGGTGTTTCAATATG
CAAACCTTTTCGACGTTTTGTTGCGTGTGTGTTGCTAACCGCACTACGGT
CTCGTGATCGGTTTGCCTTTTAAGCAGTCGTATCCGCCGCTGAACTGCTG
TCCTCACTTCTCGACCAATCGAACCATACCGCAGCCCTCAAGTGCTGGCG
TGCGACGCCTTGTACCTGTGTGCCGGTCTGGGTGCCTACACCGTCAAGGA
GCATTTCGACTTCCAGGCGTGGTTTCAGGCGTTTCTAGGGCCGGCGCTCG
AAGCGCTTGTGGCGACAATGCAAGCCAGAGCGCTGCAGGTGAGCGGAGGA
GAGGAGTCTGGTTTACGCAGGAGTATTATTGTGGGCGAGGTGTCCGGAAA
AACGTCCATCTCCTACCTCCTACATCTATATCGTGGTTGTGGGTCTTGA
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Coding sequence (CDS) from alignment at Scaffold_444:79808..80456-

>EsuBft995_9a-0001 ID=EsuBft995_9a-0001|Name=EsuBft995_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_444:79808..80456- (Ectocarpus subulatus male Bft15b)
ATGGCTTTGCTCGAGGCGAGCGGCAACAACGTGGGTGGCGTCCTCGCTGC
GGCAGTCGCCAACATGCTGTCGCAGGGCGTTCAAGAACAGATCGAGACTT
GCCGGCAAACTGCCATTAGGTGCGGCCAGCGAATACGCGTCGCGAACCCT
CAAGTGCTGGCGTGCGACGCCTTGTACCTGTGTGCCGGTCTGGGTGCCTA
CACCGTCAAGGAGCATTTCGACTTCCAGGCGTGGTTTCAGGCGTTTCTAG
GGCCGGCGCTCGAAGCGCTTGTGGCGACAATGCAAGCCAGAGCGCTGCAG
GTGAGCGGAGGAGAGGAGTCTGGTTTACGCAGGAGTATTATTGTGGGCGA
GGTGTCCGGAAAAACGTCCATCTCCTACCTCCTACATCTATATCGTGGTT
GTGGGTCTTGA
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