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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7G018 |
| ProteomeId | EsuBft995_7 |
| Protein domains | SSF54928 |
| Protein domains | IPR000504 |
| Protein domains | PTHR23365 |
| Protein domains | IPR012677 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | mki67 fha domain-interacting nucleolar phospho os:xenopus tropicalis gn:nifk pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2315 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.39e-180 |
| EggNOG OGs | KOG4208@1|root,KOG4208@2759|Eukaryota |
| Ec32 ortholog description | RNA recognition motif domain |
| Ec32 ortholog | Ec-22_003260.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | NOP15 |
| KEGG ko | ko:K14838 |
| GOs | GO:0000910,GO:0000912,GO:0000915,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0030029,GO:0030036,GO:0030684,GO:0030687,GO:0030865,GO:0030866,GO:0031032,GO:0031974,GO:0031981,GO:0032506,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044837,GO:0051301,GO:0061640,GO:0070013,GO:0071840,GO:0097159,GO:1901363,GO:1990904 |
| Description | RNA binding |
| COG category | B |
| BRITE | ko00000,ko03009 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0010467 |
| GO | 0031227 |
| GO | 0034645 |
| GO | 0042273 |
| GO | 0010923 |
| GO | 0005730 |
| GO | 0000166 |
| GO | 0030687 |
| GO | 0005654 |
| GO | 0005622 |
| GO | 0000794 |
| GO | 0016070 |
| GO | 0005737 |
| GO | 0000915 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft995_7a-0001 ID=EsuBft995_7a-0001|Name=EsuBft995_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2315bp|location=Sequence derived from alignment at Scaffold_444:90290..94846+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AACATCAGCGGACACAACCTGGCCAAGCCCCCCTCGCTCACGCTGCAAAG ATGGCGAAGGTCATCCGGAGAGATCTTGAGCAGAAGCTAGCGGCGCTGGA AGGCGCCGAGTGGGACAGCATGAGCGAGAGCGACCTCAGCGGCGGGGAGG CATCCGATGGCGATGAGCTTAAGCCCCCGCCGCTTCCCCGACACGCTAAG AAGGCCGGGCGCAAGGGCAAGGGGGGGGGGTCGGTGGTTCCTGTGGGGCC TGCGGGAGAGCCCTCGGGCGTGGTTTACATCGGGCACATCCCGCACGGGT TTTACGAGGAGGCGATGAATGGCTTCTTCAAGCAGTTCGGGGACGTCATC CGGGTTCGCATCTCCAGAAGCAAGAAGAGCGGACGTTGCAAGGGCTACGC TTACGTGGAGTTCGCATCTCCGGAGGTTGCCCAGATCGTGGCCGAGACCA TGAACGGGTACTACCTGTTCGACAAGCAGCTGGTGTGCCGCGTGCTCAAG TTCGAGGAGATACACCCCAACCTTTTCGACGGCGCAGGGGTGAAGTTTCG CAAGGTCAACTGGCACGGCCTCTACAGAGAGAAGTACAACGCCGACAGAA CTCAGGTAAAGGACGAAAAACACACAGCCAAGCTGCTCAAAAAGGACAAG GCCAAGAAGGACAAGCTCGCCAAGCTCGGCATCGACTACGATTTCCCGGG GTTCGTGGCAACTCTAAAGGACCGGAACGTAGCGAAGGGACCTTTCCAAA AACCCAAAGGCGCCAAACAGAACAAAGAAAGCGCCAAGGTGGAAGACGGG AAGGGTGGGAAGGAGACTTGGGGGGGGCGGGGCGGGGAGGGGGCATCGAA CGCGAACGACAAGAGATCAGCGGCCAAAGCAGAAGCGGCTGCAAAGGCGT CATCAAAGGGGGATGACGCACCCAGCGCGAAAAAGTCGAAGAGCTCGGCA CAACCAGCAACAGTCGCAGCGAAATCAACACCCAAGGCCAAGGGGAGCGC CAAGATGCCCTCCAAGCCAACAGAAGCGGAGGAGAAAGACGTTGCCGCCG CCACTTCCAGCGGGAAATCACTGGAGAGCGTCAAGGGCAAGAAGGGCTCC GGGAAAAAGGTCAAGGCCCCCAAGATGCCTGAACCCACCGTCGTTGCTAG CGTAGGCTCGACGGGCAAGAAGAAGAAAGCCAAGTCGCCCAAGAGCGGCG GTGGTGCGGGCAAGAAGAGGCCCTTGGAGGAGGCGGAAGAAGCGACCCCC GCTGCGGCCTCGCCCGCCTCGACCAAGAAGCCCAAGAGCGCCAAGCGTTC CAAGGCATGATCCGAACGTCGGTGTATGTAGCGAGAGATACTGCTGAAGA CTGATGCGACGTTAGAGGGGTGCACTATTCGGGGTAAAATAGTACATTTG TCTGGCGGGTACACTGTGTTGCTGTTTTGGTGATTTTGCGGCAAAGTAAG CAAAGCATTGCGTGCGGCCGACGGGTTTGCGTAGTGTGTCTCTCAACCCA AGGAGCAAGACGAGGGGATTTCCCTCCAGTAGCATGTGACCTTGTTGGTC GCGTTAAACACCGCATCTCCGTGTGGAGGGGTTCGAAGCTCGATTTCTCT GCTGCAGGAGCTGAGCGCGTTGGAACCGTCTCGTCGAGAGCTTTCCGCAT TCGCATCGTTTTGATTTGGGCATCCTCTTGGTCGTGGAGTAGGCGGGCTT TGAATTTCGTCGAAGGGGTGTGGTATCTTGCGTCAAATCACCTACGGTAC ATTTGTCGGGACGCCTCCTTTCATTTTTTGGATACCCTGGCGTAGCTAGG TCAGCAGATTCGTTGTGACTCTTCGCTTGTGGGACGGGTTGCAATTTGTG TGCTTCACTTGAGTGCAGTCTACTCTCCACGGACGCCCTCTCTAGTCAGT GTATCGGCGCACGCTCGTCGCCAAGGAAGGCTTGATTTGATGAGCGTGAA CGGTTCAACTGGTGGTTCGCCTCTCTTGAGAAATGATTGTTTCGTTTGCT CGGTCATGTCGGGATGAAGCTGCGTGACTGTCCTCGATTGGTGTGTTGAT GTATGCTTACGCTATGGCTTACCAGGTACATACGCCCTCGGTGTGTCGCG GTTCAAGTTTGGTCTCGATCGTTTCGTGTATCGCTGACACGGCCAGCTAA GAGGAAATATTGTTGCGATTCCCATTGTGCAAGCGTGTCCTACTGCACCA TACCGCCTGTAAAGCCCAGGGATAGGCGTCTATGTTTTTCGCAAACAGGC CGCCTAGCAAGGTCGTTCTTGACTTTGCTTCCAAGACAGTTGTCAGGAAA AAAATGCACTCGTCG back to topprotein sequence of EsuBft995_7a-0001 >EsuBft995_7 ID=EsuBft995_7|Name=EsuBft995_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=419bp
MAKVIRRDLEQKLAALEGAEWDSMSESDLSGGEASDGDELKPPPLPRHAK KAGRKGKGGGSVVPVGPAGEPSGVVYIGHIPHGFYEEAMNGFFKQFGDVI RVRISRSKKSGRCKGYAYVEFASPEVAQIVAETMNGYYLFDKQLVCRVLK FEEIHPNLFDGAGVKFRKVNWHGLYREKYNADRTQVKDEKHTAKLLKKDK AKKDKLAKLGIDYDFPGFVATLKDRNVAKGPFQKPKGAKQNKESAKVEDG KGGKETWGGRGGEGASNANDKRSAAKAEAAAKASSKGDDAPSAKKSKSSA QPATVAAKSTPKAKGSAKMPSKPTEAEEKDVAAATSSGKSLESVKGKKGS GKKVKAPKMPEPTVVASVGSTGKKKKAKSPKSGGGAGKKRPLEEAEEATP AAASPASTKKPKSAKRSKA back to topmRNA from alignment at Scaffold_444:90290..94846+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft995_7a-0001 ID=EsuBft995_7a-0001|Name=EsuBft995_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4557bp|location=Sequence derived from alignment at Scaffold_444:90290..94846+ (Ectocarpus subulatus male Bft15b) AACATCAGCGGACACAACCTGGCCAAGCCCCCCTCGCTCACGCTGCAAAG
ATGGCGAAGGTCATCCGGAGAGATCTTGAGCAGAAGCTAGCGGCGCTGGA
AGGCGCCGAGTGGGACAGCATGAGCGAGAGCGACCTCAGCGGCGGGGAGG
CATCCGATGGCGATGAGCTTAAGCCCCCGCCGCTTCCCCGACACGCTAAG
AAGGCCGGGCGCAAGGGCAAGGGGGGGGGGTCGGTGGTTCCTGTGGGGCC
TGCGGGAGAGCCCTCGGGCGTGGTTTACATCGGGCACATCCCGCACGGGT
TTTACGAGGAGGCGATGAATGGCTTCTTCAAGCAGTTCGGGGACGTCATC
CGGGTTCGCATCTCCAGAAGCAAGAAGAGCGGACGTTGCAAGGTGAGGCT
TAGCCCTTTACTTGCTGACTTTGTCTGTCTCCTCGTACTCGATTTCTGTG
TGTTTGAATCATCGGTAGCCGTCATCGATGCACATTGCTAGACACAGCGC
GAACGCGCACTAGTTGTGGGCAAAGTTGTGTCGTTATTCTTTTTTTTGTT
TTTTGCTGTCGGTGGGAAAGGAGGTTAAGTGGGTGCAGTGCCAAGGCTCA
CTCTGCTACGCAGGATAAGGTCTGCTCGGTCCAACAATTAGCGTTTGCCC
TACGCTAATTCCAATCGGTTGGAGTACATGTATCAGTGGAAGTTTCTACG
GCAGATGTTGTCTCTTCTCTCTTGTGCGCTGCACACTTATCAAGCACTAC
AGTAGCAGGGTGAGGACAACTTCTTCCCTGTCCTTAGTTTCGTTGAGAAG
AAAAAGGAACACGAGCAGTAAGTTCGTCATACCAGCGATTCCTTCAAACC
ACGTCGTGAACTTTGAGCACCATCGCGTCCACCAGATGTTGACCTTGCGT
TTCGATGTCTGTTCCTTTCGCCACGGCAAATGTTATCCCTGACGGTGCAT
GGTAGTTGTTTTTCGAGGGTAATCGTGTATCCACGTATAGATCCTCCCCA
CTCCTCGCTTGCCGGAGAATTGCTTCTCTGGTGTTTAGCTGATGCTATTC
CTTGCCGCAAGTGATACCCAACGACTTCTCGTTTCGGTATTCACCACTTG
AAAAGGATAGTTTTCGTGACGTTCAAGCATGATTCTACCTCGATGCACAC
CGTGTACAGTAGACTGTATTTTATGCCAAACGATGTTGCGGGAAGATTTA
CGCCGCGAATTGATGTAGGTCACCAATGTGTTCGGCGCCGCACATCGCAA
GCATCAATACCTCATCGCACACCGACCACCAACCCACCAAGTTGGCACAT
GAAAGCACCATGATTCAATTGACTCCCCTCAACACCTCGAGTTTTCCGGT
GTTTACGCACGCTTCAGGTGTACGCGTATCGTATCTCGGCCACAAACTCC
CATCAACACATAAAACGACGCATATCTCACACGCAACCTTCGAGAAATCT
GATTCAATCTACTCCCGTCAATACCTTGGCTTCCTGTGTGTACGCGTGCT
TAAGAGCTATGCATACGCTTATTTTTATCTTGTTCACAACCTATCAACAC
GCATGAAACGGATATCGTACCTCTTTAATGGCACCAGCAACCCTTTACAT
AATCTGATCGATCGCATCTCCCCTATAACCTTGCGTTAACGCACCCTTCT
CCAGGGCTACGCTTACGTGGAGTTCGCATCTCCGGAGGTTGCCCAGATCG
TGGCCGAGACCATGAACGGGTACTACCTGTTCGACAAGCAGCTGGTGTGC
CGCGTGCTCAAGTTCGAGGAGATACACCCCAACCTTTTCGACGGCGCAGG
GGTGAAGTTTCGCAAGGTCAACTGGCACGGCCTCTACAGAGAGAAGTACA
ACGCCGACAGGTGAGCATTTAGGTGATGGTGGCACGTATTGTTGGTGCTG
TTGCCACTGCGTGTTGTGCTTCTTGTTTTTTCCTTGGTTGGCGACGCGGT
TTTGGGTCATGATTAGAAATGGAGATGGGCATCGGACGGGAAAGAGCAGG
AACCGATGACCGGCTAGGAGGCATTGTTCTCTAAAACACAAAGAACCGGT
TAGAAGGGTTTTTATTTGCCCGGGCATTAACCGTTTGAAGAACACTTCCT
TTTTTTAACACCTCCGATTTTTGGTTTCGAGACCCTTCACCGATGGACGC
CTACTAGGTTTCCAAATACCATATATGACACAAGATAACACACACCCTTG
ACCAGTTTTCGAAGCTCGATTTCTCAACTGCAGGAACAGCCACAGCGCCG
AAAACGGCGGCGTTGAAACTGTGTCGTCGAGAGCTTGTCGAAGATGTATC
TTTTCGTTTATGCATCCTCTTCGTCGTGGAGTAATCGAGCTTTGAAAATC
GGTGCAGGGGGTGTGTTATCTTGTGTCATATACGGTAACCGAGTATAACC
GGGATGTCCGTCTCTAGTGCAATCATGAAATCATAATAAGTGCAGAGGGA
TTGTACTGTTAGGAGGGCTGGGTGCCGGTGCTGCGCTGCAGGAGGCGTTT
AAACGGCTACACTGGAACACAGGCAAGCGAGGAGACGGTGTTGAGTACTT
CCCTCTCGGCACGGAGCCATCCCACGTCATAACTTGCGCCGCCGCTGCTT
TTGTGCATGTGTAAATGTGCTGCAGTTTGGGGAGGTGACGTTCTTGGTTT
TGGTGGAGTGGAGTGAGGAGGTGATGCGGGTTTGTGGAAGCCGCCGCACA
AGGCACGCTCCTGGCATGAGTTCATGCGTACCTCTTGGTATTGTTTTGTT
GCGTTTTTTACGACACAATCTCCTTATTGTAATGTGGTTTCTCCGTCCTC
AACGTCGATTGCCGTAACCCCCCCCCCACCTACATCACAGAACTCAGGTA
AAGGACGAAAAACACACAGCCAAGCTGCTCAAAAAGGACAAGGCCAAGAA
GGACAAGCTCGCCAAGCTCGGCATCGACTACGATTTCCCGGGGTTCGTGG
CAACTCTAAAGGACCGGAACGTAGCGAAGGGACCTTTCCAAAAACCCAAA
GGCGCCAAACAGAACAAAGAAAGCGCCAAGGTGGAAGACGGGAAGGGTGG
GAAGGAGACTTGGGGGGGGCGGGGCGGGGAGGGGGCATCGAACGCGAACG
ACAAGAGATCAGCGGCCAAAGCAGAAGCGGCTGCAAAGGCGTCATCAAAG
GGGGATGACGCACCCAGCGCGAAAAAGTCGAAGAGCTCGGCACAACCAGC
AACAGTCGCAGCGAAATCAACACCCAAGGCCAAGGGGAGCGCCAAGATGC
CCTCCAAGCCAACAGAAGCGGAGGAGAAAGACGTTGCCGCCGCCACTTCC
AGCGGGAAATCACTGGAGAGCGTCAAGGGCAAGAAGGGCTCCGGGAAAAA
GGTCAAGGCCCCCAAGATGCCTGAACCCACCGTCGTTGCTAGCGTAGGCT
CGACGGGCAAGAAGAAGAAAGCCAAGTCGCCCAAGAGCGGCGGTGGTGCG
GGCAAGAAGAGGCCCTTGGAGGAGGCGGAAGAAGCGACCCCCGCTGCGGC
CTCGCCCGCCTCGACCAAGAAGCCCAAGAGCGCCAAGCGTTCCAAGGCAT
GATCCGAACGTCGGTGTATGTAGCGAGAGATACTGCTGAAGACTGATGCG
ACGTTAGAGGGGTGCACTATTCGGGGTAAAATAGTACATTTGTCTGGCGG
GTACACTGTGTTGCTGTTTTGGTGATTTTGCGGCAAAGTAAGCAAAGCAT
TGCGTGCGGCCGACGGGTTTGCGTAGTGTGTCTCTCAACCCAAGGAGCAA
GACGAGGGGATTTCCCTCCAGTAGCATGTGACCTTGTTGGTCGCGTTAAA
CACCGCATCTCCGTGTGGAGGGGTTCGAAGCTCGATTTCTCTGCTGCAGG
AGCTGAGCGCGTTGGAACCGTCTCGTCGAGAGCTTTCCGCATTCGCATCG
TTTTGATTTGGGCATCCTCTTGGTCGTGGAGTAGGCGGGCTTTGAATTTC
GTCGAAGGGGTGTGGTATCTTGCGTCAAATCACCTACGGTACATTTGTCG
GGACGCCTCCTTTCATTTTTTGGATACCCTGGCGTAGCTAGGTCAGCAGA
TTCGTTGTGACTCTTCGCTTGTGGGACGGGTTGCAATTTGTGTGCTTCAC
TTGAGTGCAGTCTACTCTCCACGGACGCCCTCTCTAGTCAGTGTATCGGC
GCACGCTCGTCGCCAAGGAAGGCTTGATTTGATGAGCGTGAACGGTTCAA
CTGGTGGTTCGCCTCTCTTGAGAAATGATTGTTTCGTTTGCTCGGTCATG
TCGGGATGAAGCTGCGTGACTGTCCTCGATTGGTGTGTTGATGTATGCTT
ACGCTATGGCTTACCAGGTACATACGCCCTCGGTGTGTCGCGGTTCAAGT
TTGGTCTCGATCGTTTCGTGTATCGCTGACACGGCCAGCTAAGAGGAAAT
ATTGTTGCGATTCCCATTGTGCAAGCGTGTCCTACTGCACCATACCGCCT
GTAAAGCCCAGGGATAGGCGTCTATGTTTTTCGCAAACAGGCCGCCTAGC
AAGGTCGTTCTTGACTTTGCTTCCAAGACAGTTGTCAGGAAAAAAATGCA
CTCGTCG back to topCoding sequence (CDS) from alignment at Scaffold_444:90290..94846+ >EsuBft995_7a-0001 ID=EsuBft995_7a-0001|Name=EsuBft995_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1260bp|location=Sequence derived from alignment at Scaffold_444:90290..94846+ (Ectocarpus subulatus male Bft15b) ATGGCGAAGGTCATCCGGAGAGATCTTGAGCAGAAGCTAGCGGCGCTGGA AGGCGCCGAGTGGGACAGCATGAGCGAGAGCGACCTCAGCGGCGGGGAGG CATCCGATGGCGATGAGCTTAAGCCCCCGCCGCTTCCCCGACACGCTAAG AAGGCCGGGCGCAAGGGCAAGGGGGGGGGGTCGGTGGTTCCTGTGGGGCC TGCGGGAGAGCCCTCGGGCGTGGTTTACATCGGGCACATCCCGCACGGGT TTTACGAGGAGGCGATGAATGGCTTCTTCAAGCAGTTCGGGGACGTCATC CGGGTTCGCATCTCCAGAAGCAAGAAGAGCGGACGTTGCAAGGGCTACGC TTACGTGGAGTTCGCATCTCCGGAGGTTGCCCAGATCGTGGCCGAGACCA TGAACGGGTACTACCTGTTCGACAAGCAGCTGGTGTGCCGCGTGCTCAAG TTCGAGGAGATACACCCCAACCTTTTCGACGGCGCAGGGGTGAAGTTTCG CAAGGTCAACTGGCACGGCCTCTACAGAGAGAAGTACAACGCCGACAGAA CTCAGGTAAAGGACGAAAAACACACAGCCAAGCTGCTCAAAAAGGACAAG GCCAAGAAGGACAAGCTCGCCAAGCTCGGCATCGACTACGATTTCCCGGG GTTCGTGGCAACTCTAAAGGACCGGAACGTAGCGAAGGGACCTTTCCAAA AACCCAAAGGCGCCAAACAGAACAAAGAAAGCGCCAAGGTGGAAGACGGG AAGGGTGGGAAGGAGACTTGGGGGGGGCGGGGCGGGGAGGGGGCATCGAA CGCGAACGACAAGAGATCAGCGGCCAAAGCAGAAGCGGCTGCAAAGGCGT CATCAAAGGGGGATGACGCACCCAGCGCGAAAAAGTCGAAGAGCTCGGCA CAACCAGCAACAGTCGCAGCGAAATCAACACCCAAGGCCAAGGGGAGCGC CAAGATGCCCTCCAAGCCAACAGAAGCGGAGGAGAAAGACGTTGCCGCCG CCACTTCCAGCGGGAAATCACTGGAGAGCGTCAAGGGCAAGAAGGGCTCC GGGAAAAAGGTCAAGGCCCCCAAGATGCCTGAACCCACCGTCGTTGCTAG CGTAGGCTCGACGGGCAAGAAGAAGAAAGCCAAGTCGCCCAAGAGCGGCG GTGGTGCGGGCAAGAAGAGGCCCTTGGAGGAGGCGGAAGAAGCGACCCCC GCTGCGGCCTCGCCCGCCTCGACCAAGAAGCCCAAGAGCGCCAAGCGTTC CAAGGCATGA back to top
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