EsuBft994_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft994_4a-0001
Unique NameEsuBft994_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_72contigScaffold_72:578741..579726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LH13
ProteomeIdEsuBft994_4
Protein domainsIPR016030
Protein domainsPTHR12213
Ownerapollo_admin@sb-roscoff.fr
Notecob yrinic acid -diamide mitochondrial os:mus musculus gn:mmab pe:1 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length599
Hectar predicted targeting categoryother localisation
Evalue2.84e-82
EggNOG OGsCOG2096@1|root,2QS64@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
EC2.5.1.17
Descriptioncob(I)yrinic acid a,c-diamide adenosyltransferase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0005739
GO0006767
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft994_4aEsuBft994_4aEctocarpus subulatus male Bft15bgeneScaffold_72 578741..579726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_4a-0001-exonagat-exon-91426Ectocarpus subulatus male Bft15bexonScaffold_72 578741..579081 -
EsuBft994_4a-0001-exonEsuBft994_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_72 579469..579726 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_4a-0001-exonagat-three_prime_utr-23873Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_72 578741..578760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_4a-0001-cdsEsuBft994_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_72 578761..579081 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_4a-0001-exonagat-five_prime_utr-15570Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_72 579658..579726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_4a-0001EsuBft994_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_72 578761..579657 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft994_4a-0001 ID=EsuBft994_4a-0001|Name=EsuBft994_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=599bp|location=Sequence derived from alignment at Scaffold_72:578741..579726- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCNNNNNNNNNNNGCGGCAACGTGAGCCTCGCGACGGCCCTTGTCGGCGG
CAGCGTAGGGTTAGGGTATATGGCGTTTCGGTTGGCTAGCCAGGCCCAGC
GGCGGTCATTGACCGGGGCGAACGGCAGGGGCAGTGGCGGCGGCGGGGAG
GGGGGCGACGAGCGTCCGATGCTGGACATGGCGGAGATCGCTCGGAGGGC
GGTGCCAAGAAAAAAGTCGTTTCTGTACACCAGATCGGGGGACAAGGGGA
CCTCTCAGCTGTACAACATGGAGACAAGACCGAAGAGCGACCCGTCCTTT
GAGGCCCTCGGCAACATGGACGAGCTCAACGCTAGCCTAGCGCTAGCGGT
GGCGCACTCCGAGCTCGCCCGCAACGGCCTCTCGGAGATGCTGGTGGCCA
TTCAGTCTCTCATCATCGACGCGTCGGCCTTGGTGGCCACACCTAGGGAT
AAGTCCTCGGCTCGAAAGATCAACCGTACTGGCTTCCCCGCCTGGTGCAC
TGACCAGCTTGAGGTGATAGCAGAATGCGGCATTGGGGGGGGGAGGGGGG
GGCGTACACTTCTGTTTTGCATGCATTAGTGCTTAGACCATTGACCACG
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protein sequence of EsuBft994_4a-0001

>EsuBft994_4 ID=EsuBft994_4|Name=EsuBft994_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MAFRLASQAQRRSLTGANGRGSGGGGEGGDERPMLDMAEIARRAVPRKKS
FLYTRSGDKGTSQLYNMETRPKSDPSFEALGNMDELNASLALAVAHSELA
RNGLSEMLVAIQSLIIDASALVATPRDKSSARKINRTGFPAWCTDQLEVI
AECGIGGGRGGRTLLFCMH
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mRNA from alignment at Scaffold_72:578741..579726-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft994_4a-0001 ID=EsuBft994_4a-0001|Name=EsuBft994_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=986bp|location=Sequence derived from alignment at Scaffold_72:578741..579726- (Ectocarpus subulatus male Bft15b)
CCNNNNNNNNNNNGCGGCAACGTGAGCCTCGCGACGGCCCTTGTCGGCGG
CAGCGTAGGGTTAGGGTATATGGCGTTTCGGTTGGCTAGCCAGGCCCAGC
GGCGGTCATTGACCGGGGCGAACGGCAGGGGCAGTGGCGGCGGCGGGGAG
GGGGGCGACGAGCGTCCGATGCTGGACATGGCGGAGATCGCTCGGAGGGC
GGTGCCAAGAAAAAAGTCGTTTCTGTACACCAGATCGGGGGACAAGGGGA
CCTCTCAGGTATGGTGGTCGTCGTAACGTGCTCGTCGATATCCAAGAGCT
TGGGCTCCTCATACTGTGTTGGTGATGGTGGCGTTGGCTGGTTTGGCCAT
ATTTCACCTCACGCCGCTTGATGTTTTTGTCCTGTCCAGCTGTACATCAT
CGAGGGACGACCCTCTGCCTCTCTCTCTGCACACACACACCATTTTTATG
CAACGGCAACGTAAACGTATCCCCACCATATTTCACCACACGCCGCTTGG
TGTTTTTGTCCTTTCCAGCTGCACATCATCGAGGGACGACCCTCTGCCTC
TCTCTCGGCACACACACACCATTTTTATGCAACGGTAACGTAAACGTATC
CCCACCATATTTCACCACACGCCCATGATGTTTTGTCCTGTCCAGCTGTA
CAACATGGAGACAAGACCGAAGAGCGACCCGTCCTTTGAGGCCCTCGGCA
ACATGGACGAGCTCAACGCTAGCCTAGCGCTAGCGGTGGCGCACTCCGAG
CTCGCCCGCAACGGCCTCTCGGAGATGCTGGTGGCCATTCAGTCTCTCAT
CATCGACGCGTCGGCCTTGGTGGCCACACCTAGGGATAAGTCCTCGGCTC
GAAAGATCAACCGTACTGGCTTCCCCGCCTGGTGCACTGACCAGCTTGAG
GTGATAGCAGAATGCGGCATTGGGGGGGGGAGGGGGGGGCGTACACTTCT
GTTTTGCATGCATTAGTGCTTAGACCATTGACCACG
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Coding sequence (CDS) from alignment at Scaffold_72:578741..579726-

>EsuBft994_4a-0001 ID=EsuBft994_4a-0001|Name=EsuBft994_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_72:578741..579726- (Ectocarpus subulatus male Bft15b)
ATGGCGTTTCGGTTGGCTAGCCAGGCCCAGCGGCGGTCATTGACCGGGGC
GAACGGCAGGGGCAGTGGCGGCGGCGGGGAGGGGGGCGACGAGCGTCCGA
TGCTGGACATGGCGGAGATCGCTCGGAGGGCGGTGCCAAGAAAAAAGTCG
TTTCTGTACACCAGATCGGGGGACAAGGGGACCTCTCAGCTGTACAACAT
GGAGACAAGACCGAAGAGCGACCCGTCCTTTGAGGCCCTCGGCAACATGG
ACGAGCTCAACGCTAGCCTAGCGCTAGCGGTGGCGCACTCCGAGCTCGCC
CGCAACGGCCTCTCGGAGATGCTGGTGGCCATTCAGTCTCTCATCATCGA
CGCGTCGGCCTTGGTGGCCACACCTAGGGATAAGTCCTCGGCTCGAAAGA
TCAACCGTACTGGCTTCCCCGCCTGGTGCACTGACCAGCTTGAGGTGATA
GCAGAATGCGGCATTGGGGGGGGGAGGGGGGGGCGTACACTTCTGTTTTG
CATGCATTAG
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