EsuBft993_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft993_9a-0001
Unique NameEsuBft993_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:15490..16219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft993_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length73
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft993_9aEsuBft993_9aEctocarpus subulatus male Bft15bgeneScaffold_589 15490..16219 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_9a-0001-exonEsuBft993_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 15490..16219 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_9a-0001-exonagat-three_prime_utr-23871Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_589 15490..15889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_9a-0001-cdsEsuBft993_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 15890..16219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_9a-0001EsuBft993_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 15890..16219 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft993_9a-0001 ID=EsuBft993_9a-0001|Name=EsuBft993_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=730bp|location=Sequence derived from alignment at Scaffold_589:15490..16219- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGTGCGATGCTGTCAGGGATGGGGGCGTCAACTTATTTTGCGG
GGCGGTCCACGCAGCTTCAAACGCTGGTTGGTTGTGGTGTGATGGTATTA
AAGAGCGCTCACGAAGAGGACGGCAATGCGGGAATCGCGACTGGCATCAC
CGACGGAACGGCTGCGGACGGTGTTCGCGGTTGGAAAAGTGCATTACTAG
TTTGCTTCGAATGCTGGAGACTCTCGTACTAATGCAGGTCGCGGCATCGA
TGTGGCGCCTCAGGCCAGGTGGGGGGTTATCCCCTGCTACCGATGATGCG
ATCGACGGTATGATGTTACGCGGTACATGACCCCGTGGTTAAGGCCTACT
CACAGATTCATTCGCACACATGGTGATGTTTTGGGAGTTTTGGAGTGTGC
ATATCATTCTAAATGGCAGGCCTGAACGGTATGTCCAAGGCGAATCGATA
GCTTATGTCGGTGTCATTGTAGATAATAAGTGGATTTAGGTGCGCGTGAG
GAATTGTGCTGTAGCATTTAAGACTTGTAGTCTAGAACACCAAGAGTTTT
CGTTTCTTGTTGCAATCTAATTCAAACGGTCGTTTTGTTATAATAGGTTC
GTGTGTGTAGGGTTCCGAATCACAACATCTTTATTTGCACTAAGAGTGTT
GGCGTGCTTCTATTTGATCTTTGCCTAGAATAGACTAACTACATGGGTGT
GTGTTGTGTTTCGTCAATACGGCGTCCTTT
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protein sequence of EsuBft993_9a-0001

>EsuBft993_9 ID=EsuBft993_9|Name=EsuBft993_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MELCDAVRDGGVNLFCGAVHAASNAGWLWCDGIKERSRRGRQCGNRDWHH
RRNGCGRCSRLEKCITSLLRMLETLVLMQVAASMWRLRPGGGLSPATDDA
IDGMMLRGT
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mRNA from alignment at Scaffold_589:15490..16219-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft993_9a-0001 ID=EsuBft993_9a-0001|Name=EsuBft993_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=730bp|location=Sequence derived from alignment at Scaffold_589:15490..16219- (Ectocarpus subulatus male Bft15b)
ATGGAGCTGTGCGATGCTGTCAGGGATGGGGGCGTCAACTTATTTTGCGG
GGCGGTCCACGCAGCTTCAAACGCTGGTTGGTTGTGGTGTGATGGTATTA
AAGAGCGCTCACGAAGAGGACGGCAATGCGGGAATCGCGACTGGCATCAC
CGACGGAACGGCTGCGGACGGTGTTCGCGGTTGGAAAAGTGCATTACTAG
TTTGCTTCGAATGCTGGAGACTCTCGTACTAATGCAGGTCGCGGCATCGA
TGTGGCGCCTCAGGCCAGGTGGGGGGTTATCCCCTGCTACCGATGATGCG
ATCGACGGTATGATGTTACGCGGTACATGACCCCGTGGTTAAGGCCTACT
CACAGATTCATTCGCACACATGGTGATGTTTTGGGAGTTTTGGAGTGTGC
ATATCATTCTAAATGGCAGGCCTGAACGGTATGTCCAAGGCGAATCGATA
GCTTATGTCGGTGTCATTGTAGATAATAAGTGGATTTAGGTGCGCGTGAG
GAATTGTGCTGTAGCATTTAAGACTTGTAGTCTAGAACACCAAGAGTTTT
CGTTTCTTGTTGCAATCTAATTCAAACGGTCGTTTTGTTATAATAGGTTC
GTGTGTGTAGGGTTCCGAATCACAACATCTTTATTTGCACTAAGAGTGTT
GGCGTGCTTCTATTTGATCTTTGCCTAGAATAGACTAACTACATGGGTGT
GTGTTGTGTTTCGTCAATACGGCGTCCTTT
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Coding sequence (CDS) from alignment at Scaffold_589:15490..16219-

>EsuBft993_9a-0001 ID=EsuBft993_9a-0001|Name=EsuBft993_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_589:15490..16219- (Ectocarpus subulatus male Bft15b)
ATGGAGCTGTGCGATGCTGTCAGGGATGGGGGCGTCAACTTATTTTGCGG
GGCGGTCCACGCAGCTTCAAACGCTGGTTGGTTGTGGTGTGATGGTATTA
AAGAGCGCTCACGAAGAGGACGGCAATGCGGGAATCGCGACTGGCATCAC
CGACGGAACGGCTGCGGACGGTGTTCGCGGTTGGAAAAGTGCATTACTAG
TTTGCTTCGAATGCTGGAGACTCTCGTACTAATGCAGGTCGCGGCATCGA
TGTGGCGCCTCAGGCCAGGTGGGGGGTTATCCCCTGCTACCGATGATGCG
ATCGACGGTATGATGTTACGCGGTACATGA
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