EsuBft993_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft993_8a-0001
Unique NameEsuBft993_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:23526..24065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft993_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft993_8aEsuBft993_8aEctocarpus subulatus male Bft15bgeneScaffold_589 23526..24065 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_8a-0001-exonEsuBft993_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 23526..24065 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_8a-0001-exonagat-five_prime_utr-15568Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_589 23526..23558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_8a-0001-cdsEsuBft993_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 23559..24065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_8a-0001EsuBft993_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 23559..24065 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft993_8a-0001 ID=EsuBft993_8a-0001|Name=EsuBft993_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=540bp|location=Sequence derived from alignment at Scaffold_589:23526..24065+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGAGTGTATCCCTCTAGGGAACCCGTGCTGGAGATGAATGGCGCCGATGT
TGCAGCAGAGGCTGCCGACGTCACCACGAGTACGCAGGGCAGAGTAGATA
ACCTGGAGAGAAAACTTTCAGGCCTGACGGACGAGGCACAGCAGCTGCCA
GGGCCTCTCCGAGGCGCCCTCGGAAATTTTGAGAATGAGGGGGAGTCCGG
CGGCGCTAGGGCGGGCGCTGTCGTCATGGGCACTACGTCTGCCCGCGGTC
TGCTGGAAGAGGGGCCGCACAACGACGGAATCACGCCGCTTGCACAGCAC
GAGGGAAGAAGCACCAGACCGGGAGCCAGCCTGGTAGTGCCAAGGATCCC
TGCTGGAGTGGACCCGGGCATAGGACCGGGCAGCGGGGAGGTCATGGGGT
CATCATCCCAAGAGCAGCCTGCTGCGGTGGGCGCTTACATAGACTACGCG
GCTGCAGACGAGATCATCAGCAGTAGGCCGGTTGCGGAAGGCGAACCGGT
GTGGGCATTTCAGGTCCCTGCTATTGGTGGGTTTGGTTGA
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protein sequence of EsuBft993_8a-0001

>EsuBft993_8 ID=EsuBft993_8|Name=EsuBft993_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MNGADVAAEAADVTTSTQGRVDNLERKLSGLTDEAQQLPGPLRGALGNFE
NEGESGGARAGAVVMGTTSARGLLEEGPHNDGITPLAQHEGRSTRPGASL
VVPRIPAGVDPGIGPGSGEVMGSSSQEQPAAVGAYIDYAAADEIISSRPV
AEGEPVWAFQVPAIGGFG
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mRNA from alignment at Scaffold_589:23526..24065+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft993_8a-0001 ID=EsuBft993_8a-0001|Name=EsuBft993_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=540bp|location=Sequence derived from alignment at Scaffold_589:23526..24065+ (Ectocarpus subulatus male Bft15b)
AGAGTGTATCCCTCTAGGGAACCCGTGCTGGAGATGAATGGCGCCGATGT
TGCAGCAGAGGCTGCCGACGTCACCACGAGTACGCAGGGCAGAGTAGATA
ACCTGGAGAGAAAACTTTCAGGCCTGACGGACGAGGCACAGCAGCTGCCA
GGGCCTCTCCGAGGCGCCCTCGGAAATTTTGAGAATGAGGGGGAGTCCGG
CGGCGCTAGGGCGGGCGCTGTCGTCATGGGCACTACGTCTGCCCGCGGTC
TGCTGGAAGAGGGGCCGCACAACGACGGAATCACGCCGCTTGCACAGCAC
GAGGGAAGAAGCACCAGACCGGGAGCCAGCCTGGTAGTGCCAAGGATCCC
TGCTGGAGTGGACCCGGGCATAGGACCGGGCAGCGGGGAGGTCATGGGGT
CATCATCCCAAGAGCAGCCTGCTGCGGTGGGCGCTTACATAGACTACGCG
GCTGCAGACGAGATCATCAGCAGTAGGCCGGTTGCGGAAGGCGAACCGGT
GTGGGCATTTCAGGTCCCTGCTATTGGTGGGTTTGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_589:23526..24065+

>EsuBft993_8a-0001 ID=EsuBft993_8a-0001|Name=EsuBft993_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_589:23526..24065+ (Ectocarpus subulatus male Bft15b)
ATGAATGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACGAGTAC
GCAGGGCAGAGTAGATAACCTGGAGAGAAAACTTTCAGGCCTGACGGACG
AGGCACAGCAGCTGCCAGGGCCTCTCCGAGGCGCCCTCGGAAATTTTGAG
AATGAGGGGGAGTCCGGCGGCGCTAGGGCGGGCGCTGTCGTCATGGGCAC
TACGTCTGCCCGCGGTCTGCTGGAAGAGGGGCCGCACAACGACGGAATCA
CGCCGCTTGCACAGCACGAGGGAAGAAGCACCAGACCGGGAGCCAGCCTG
GTAGTGCCAAGGATCCCTGCTGGAGTGGACCCGGGCATAGGACCGGGCAG
CGGGGAGGTCATGGGGTCATCATCCCAAGAGCAGCCTGCTGCGGTGGGCG
CTTACATAGACTACGCGGCTGCAGACGAGATCATCAGCAGTAGGCCGGTT
GCGGAAGGCGAACCGGTGTGGGCATTTCAGGTCCCTGCTATTGGTGGGTT
TGGTTGA
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