Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4530.OS08T0125300-01 |
| ProteomeId | EsuBft993_4 |
| Protein domains | IPR001584 |
| Protein domains | PR01217 |
| Protein domains | IPR012337 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 3015 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.48e-22 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft993_4a-0001 ID=EsuBft993_4a-0001|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3015bp|location=Sequence derived from alignment at Scaffold_589:71484..75160+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTCTGTTGTAGAGAGCCTGAGTTTCAACTTGTTCTCAACGCATGCTGTT
TCTCTGAAGCAACCAATCCTCTACGACGAACGTGGTGCAACCCTACAAAA
TGGGCTGCTCTTTGCTAGAGAGGAAAAACCGTCTGCATCGTATGCCATGC
GGTTGCCGTACGACCCATCTGCGATTATTGTAGACCCTGCGGCTTTGCCC
GTATTCGTGACTGCCCCCGATTCCGCCCCCGCCGTTGGCTCCGCGCGATC
CTGAGATCACAACCGCTTCCACCGCTCCCTTGCCCACGCTTGCGAGCCTC
TTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTG
GAACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCC
GCGGGGGCCGGGAGCGAGGGCGTCCAAGCCTCTCGGGCGTGTTCACCTGG
ACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGCAACCTCTACCTGTTC
GTCGCCGTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGGCCTCCGGCG
GAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGC
GGTACGACATCGGGCGCATCGAGTGTTTCCGCGTCGACAACGGCACCGAG
TGGACCCGCGGCGATTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGT
CGAGTTCACCCCGCCTGGCGTCCCGCAGTACAACGGCGTCGTCGAGAGCG
CCATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGGC
CGTGTGTTCCACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGTGG
TGACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAACC
AGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTC
ACCGGCGAGCAGGGGCCGTGCCGCGTGCTGCCGTTCTTCCAGCCCGGCTT
CATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGTT
ACTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTC
AAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGAC
GTCGGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGA
CACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCA
CCGACGCCTTCGACCGCCACACCGCCACCGCCAGCGCCCACGCCGTCGCC
CGCTCCCGCTCCTGCCTCGCCCCCTGCCGCAACGCCGCCGCCAGCGACCA
CGCCGCCGCCCGCTCCCACGACTTCACAGCCGCCCTCTGCCACTTCGCCG
TCACCGTCGGCGACCCCCGCTCCTGGCAATCCGTCCTCTGCCTCTCCGCC
GTCACCGTCGGCGACCCCCGATCCATACCAGCCGCCGCCGCCGCCGGACC
CCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGT
ACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTACGAGATC
GGGCACGAGGCACAGCACAGGACTTGTCTCGATGCTAGACAGGAACACTC
TGGTGTCGATGCTGGAGGCTCGGAGCGCGGTGGATAAGGAGCGCAGGGAG
CTGGGGGGGGCGGAGGCCGGAGAGCCGGGGGGAACGGGGGCCGGAGAGCA
GGCGGGAGCACTCGCAGCAGTGGACCCGGGGGCTGCAGGAGCGGGCTTTC
CACTCGCATTTGCCACGCTCCTCGCCAACCGGGAAGACATCGACGCCACG
CTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCATTGCCA
GGCCAGCGACCTTCGTGTCCCCAAGAGCTACAAAGAGGCCATGGCGTCGG
AGCACCGGCACCTTTGGAGCGACTCTATGCAAAGGGAGTTTTATGGCTTG
TTGGAAGCGGGGACTTTTACTCCGGCGAAGTAGCAACTAGTGGAGAACGC
AATTAACGCTAAGTGGGTATTCGATTGGAAGGCAGATGAGTTTGGATGGC
CCACTAAGGTTAAGTCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAG
TGCATCGACTTTGGAGAGTTGTACGCGCCTACCCTTTCTGTTTCGTGTGT
TAGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACTTTCGATATCGAGCAA
GCTTTTGTGCGTTCGGAGTTGGGGGAAGACGTATACATGCGTTTGCCGCA
GGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGTCTGT
ATGGCTTGAGACAGGCAACTAGGCAGTGGCATGCAATGCTGAGGTGTTTG
GTGGCGTTAGGTTTTGAACAGTGCATGGCCGATGCTTGTGTGTTTCGTTT
GATTGAGGATGAATGTGTTGTTTTCATTTTGGTTAGTACATGTAGATGAC
ATTTTTGCTGTGGCAGAGAGGGAGAGATGTGACAAATTTGGCGCCAAGCT
TAACAAGTCCGTGCAAGTGAAGAACCTGGGAGAGTTGAGATGGTATTCTG
GGTGCTTTTACGAGAGGAACAAGGAGACCGGTAGATTGACGATTTCTCAG
CAGACTTTCACGGGTGAGCTAGCAGCAGAATTTGGAGTAGTGGGAGGGGT
ACGCTGATGCGGACTTTGCAAGCAAGGCAGCAGGCCGTAGGTCGGTATCA
GGGGGGATCGTGACGTGTTGAGGAGGCGCCGTGTCTTGGTTTTCCAGAAC
GCAGAAAAGTGTGTCACGCTTTCGACCACCGAAGCAGAGTACGTCGCGTG
AAGGAGTGAAGGAGGTTTTGTTTTTAAGGCAGACTTGGCGTTTCATGTTG
CCGCAGGTCGGCATGCCGTGCATCCCCATCTTCGAGGACAACCAGGGTGC
GATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATAG
ATGTAAGGCACCATT back to topprotein sequence of EsuBft993_4a-0001 >EsuBft993_4 ID=EsuBft993_4|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=554bp
MKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSA
SRWNKVYGLRRKSDALAATKRLLADVGRYDIGRIECFRVDNGTEWTRGDF
RRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVD
FASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGP
CRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGR
VVYTNNVSWVTSAPAGEGGSAGITAAPTPPPFTPPVVSINFGPAPTPSTA
TPPPPAPTPSPAPAPASPPAATPPPATTPPPAPTTSQPPSATSPSPSATP
APGNPSSASPPSPSATPDPYQPPPPPDPAMPPLTAHAMRQLRPGTKAEGM
TDPRLPSRTRSGTRHSTGLVSMLDRNTLVSMLEARSAVDKERRELGGAEA
GEPGGTGAGEQAGALAAVDPGAAGAGFPLAFATLLANREDIDATLRDQRP
PEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF
TPAK back to topmRNA from alignment at Scaffold_589:71484..75160+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft993_4a-0001 ID=EsuBft993_4a-0001|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3677bp|location=Sequence derived from alignment at Scaffold_589:71484..75160+ (Ectocarpus subulatus male Bft15b)
TGTCTGTTGTAGAGAGCCTGAGTTTCAACTTGTTCTCAACGCATGCTGTT
TCTCTGAAGCAACCAATCCTCTACGACGAACGTGGTGCAACCCTACAAAA
TGGGCTGCTCTTTGCTAGAGAGGAAAAACCGTCTGCATCGTATGCCATGC
GGTTGCCGTACGACCCATCTGCGATTATTGTAGACCCTGCGGCTTTGCCC
GTATTCGTGACTGCCCCCGATTCCGCCCCCGCCGTTGGCTCCGCGCGATC
CTGAGATCACAACCGCTTCCACCGCTCCCTTGCCCACGCTTGCGAGCCTC
TTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTG
GAACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCC
GCGGGGGCCGGGAGCGAGGGCGTCCAAGCCTCTCGGGCGTGTTCACCTGG
ACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGCAACCTCTACCTGTTC
GTCGCCGTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGGCCTCCGGCG
GAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGC
GGTACGACATCGGGCGCATCGAGTGTTTCCGCGTCGACAACGGCACCGAG
TGGACCCGCGGCGATTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGT
CGAGTTCACCCCGCCTGGCGTCCCGCAGTACAACGGCGTCGTCGAGAGCG
CCATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGGC
CGTGTGTTCCACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGTGG
TGACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAACC
AGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTC
ACCGGCGAGCAGGGGCCGTGCCGCGTGCTGCCGTTCTTCCAGCCCGGCTT
CATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGTT
ACTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTC
AAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGAC
GTCGGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGA
CACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCA
CCGACGCCTTCGACCGCCACACCGCCACCGCCAGCGCCCACGCCGTCGCC
CGCTCCCGCTCCTGCCTCGCCCCCTGCCGCAACGCCGCCGCCAGCGACCA
CGCCGCCGCCCGCTCCCACGACTTCACAGCCGCCCTCTGCCACTTCGCCG
TCACCGTCGGCGACCCCCGCTCCTGGCAATCCGTCCTCTGCCTCTCCGCC
GTCACCGTCGGCGACCCCCGATCCATACCAGCCGCCGCCGCCGCCGGACC
CCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGT
ACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTACGAGATC
GGGCACGAGGCACAGCACAGGACTTGTCTCGATGCTAGACAGGAACACTC
TGGTGTCGATGCTGGAGGCTCGGAGCGCGGTGGATAAGGAGCGCAGGGAG
CTGGGGGGGGCGGAGGCCGGAGAGCCGGGGGGAACGGGGGCCGGAGAGCA
GGCGGGAGCACTCGCAGCAGTGGACCCGGGGGCTGCAGGAGCGGGCTTTC
CACTCGCATTTGCCACGCTCCTCGCCAACCGGGAAGACATCGACGCCACG
CTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCATTGCCA
GGCCAGCGACCTTCGTGTCCCCAAGAGCTACAAAGAGGCCATGGCGTCGG
AGCACCGGCACCTTTGGAGCGACTCTATGCAAAGGGAGTTTTATGGCTTG
TTGGAAGCGGGGACTTTTACTCCGGCGAAGTAGCAACTAGTGGAGAACGC
AATTAACGCTAAGTGGGTATTCGATTGGAAGGCAGATGAGTTTGGATGGC
CCACTAAGGTTAAGTCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAG
TGCATCGACTTTGGAGAGTTGTACGCGCCTACCCTTTCTGTTTCGTGTGT
TAGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACTTTCGATATCGAGCAA
GCTTTTGTGCGTTCGGAGTTGGGGGAAGACGTATACATGCGTTTGCCGCA
GGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGTCTGT
ATGGCTTGAGACAGGCAACTAGGCAGTGGCATGCAATGCTGAGGTGTTTG
GTGGCGTTAGGTTTTGAACAGTGCATGGCCGATGCTTGTGTGTTTCGTTT
GATTGAGGATGAATGTGTTGTTTTCATTTTGGTTAGTACATGTAGATGAC
ATTTTTGCTGTGGCAGAGAGGGAGAGATGTGACAAATTTGGCGCCAAGCT
TAACAAGTCCGTGCAAGTGAAGAACCTGGGAGAGTTGAGATGGTATTCTG
GGTGCTTTTACGAGAGGAACAAGGAGACCGGTAGATTGACGATTTCTCAG
CAGACTTTCACGGGTGAGCTAGCAGCAGAATTTGGAGTAGTGGGAGGTAA
GAGCCTTCCGATGTCTTCGGGGGTGAAGCTTTCCGATTTTGATGCGCATG
AGGTGGCGGNGACAGACTTTCCGTTTCGTGAGCTGGTAGGATCGTGGATA
TGGCTGGCGATTCAGACTAGGCCAGACATTGCGAATGCAGTAAGGGCAGT
AGCTAGGTATTGCGCATCCCCGAAGCTGGTACACTGGATTGCAGCGATGG
AGATTTTAGGCTATGCGAGGAGGACGAATCACTTTGGTATTTCGTTTCAG
AGAGGTACGGTGGAGGGATTAATNGGTAGGATCGTTGATGTGGCTGGCGA
CTCAGACTAGCCCAGACATTGCGATTGCAGGGCAGTAGCTAGGTGTTGCG
CATCTCCGAAGCTGGTACACTGGAATGCAGCGATGGAGATTTTAGGCAAT
GCGAGGAGGACGAATCACTTTGGTATTTCGTTTCAGAGAGGTACGGTGGA
GGGATTAATCTTGCAGGGGTACGCTGATGCGGACTTTGCAAGCAAGGCAG
CAGGCCGTAGGTCGGTATCAGGGGGGATCGTGACGTGTTGAGGAGGCGCC
GTGTCTTGGTTTTCCAGAACGCAGAAGTGTGTCACGCTTTCGACCACCGA
AGCGGTATCAGGGGGGATCGTGACGTGTTGAGGAGGCCTTGTGTCTTGGT
TTTCCAGAACGCAGAAGTGTGTCACGCTTTCGACCACCGAAGCAGAGTAC
GTCGCGTGAAGGAGGTTTTGTTTTTGNTTGGTTTTCCAGAACGCAGAAGT
GTGTCACGCTTTCGACCACCGAAGCGGTATCAGGGGGGATCGTGACGTGT
TGAGGAGGCCTNACGTAGTGAAGGAGGTTTTGTTTTTAAGGCAGACTTGG
CGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATCCCCATCTTCGAGGA
CAACCAGGGTGCGATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACT
CGAAGCACATAGATGTAAGGCACCATT back to topCoding sequence (CDS) from alignment at Scaffold_589:71484..75160+ >EsuBft993_4a-0001 ID=EsuBft993_4a-0001|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1665bp|location=Sequence derived from alignment at Scaffold_589:71484..75160+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCCGCGGGGGCCGGGAGCGAG
GGCGTCCAAGCCTCTCGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGG
TGCCTTCCCTGGGCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCC
TCGCGGTGGAACAAAGTCTACGGCCTCCGGCGGAAGTCCGACGCGCTGGC
GGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACGACATCGGGCGCA
TCGAGTGTTTCCGCGTCGACAACGGCACCGAGTGGACCCGCGGCGATTTC
CGGCGCTTCTGCGACGACAACGGCATCGGCGTCGAGTTCACCCCGCCTGG
CGTCCCGCAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATGA
AGGCCGGCATGGCCGCCCGCCGCAGCGCTGGCCGTGTGTTCCACGTCGAC
TTCGCCTCCATCCCCGGCCTCGACGAGCGTGGTGACCGTCTTTGGATGGA
ATCGGCGAAGTGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAAGGCCA
ACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAGGGGCCG
TGCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGCGAGGACCGCCG
CACCAAGCTCGACGACCAGGCCACCCTCTGTTACTACCTGAACGGCGGCG
ACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACCGGCCGC
GTCGTCTACACCAACAACGTGTCGTGGGTGACGTCGGCGCCAGCCGGCGA
GGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCCCGTTCACGC
CGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGACCGCC
ACACCGCCACCGCCAGCGCCCACGCCGTCGCCCGCTCCCGCTCCTGCCTC
GCCCCCTGCCGCAACGCCGCCGCCAGCGACCACGCCGCCGCCCGCTCCCA
CGACTTCACAGCCGCCCTCTGCCACTTCGCCGTCACCGTCGGCGACCCCC
GCTCCTGGCAATCCGTCCTCTGCCTCTCCGCCGTCACCGTCGGCGACCCC
CGATCCATACCAGCCGCCGCCGCCGCCGGACCCCGCGATGCCCCCGCTTA
CGGCTCACGCCATGCGGCAGCTTCGCCCGGGTACAAAGGCCGAGGGTATG
ACAGACCCGCGGCTGCCAAGCCGTACGAGATCGGGCACGAGGCACAGCAC
AGGACTTGTCTCGATGCTAGACAGGAACACTCTGGTGTCGATGCTGGAGG
CTCGGAGCGCGGTGGATAAGGAGCGCAGGGAGCTGGGGGGGGCGGAGGCC
GGAGAGCCGGGGGGAACGGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGC
AGTGGACCCGGGGGCTGCAGGAGCGGGCTTTCCACTCGCATTTGCCACGC
TCCTCGCCAACCGGGAAGACATCGACGCCACGCTGCGAGACCAGCGCCCG
CCGGAGCAACGCCCTGACCTTCCGCATTGCCAGGCCAGCGACCTTCGTGT
CCCCAAGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGGCACCTTTGGA
GCGACTCTATGCAAAGGGAGTTTTATGGCTTGTTGGAAGCGGGGACTTTT
ACTCCGGCGAAGTAG back to top
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