EsuBft992_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft992_8a-0001
Unique Name	EsuBft992_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_539	contig	Scaffold_539:822..2336 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft992_8
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	151
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft992_8a	EsuBft992_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_539 822..2336 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft992_8a-0001-exon	EsuBft992_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_539 822..2336 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft992_8a-0001-cds	EsuBft992_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_539 822..1259 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft992_8a-0001-exon	agat-three_prime_utr-23861	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_539 1260..2336 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft992_8a-0001	EsuBft992_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_539 822..1259 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_539:822..2336+
coding sequence from alignment at Scaffold_539:822..2336+

spliced messenger RNA

>EsuBft992_8a-0001 ID=EsuBft992_8a-0001|Name=EsuBft992_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1515bp|location=Sequence derived from alignment at Scaffold_539:822..2336+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTGCGAGCGTCGGCGGAGCTTCTGGCGGCCGTGACGATGCTGA
TGGTTTCGGGCATGACCAGGGCGATGATACGTCCATGGGCGGCGGGGCCG
CCGCTAGTTGCGCTTCGAGCAAAGTCGACACCGCGGCGGCTGCAGCAGCA
GCCGAGAAGGAGGTTGCCACGATGGCGGCGATTGCTAAGGCTATGCCTAG
CGGTGGGGGGGGACGACACCGGCACGTCGAGGTCGAATCGGAGATGTCGG
AGATGTCTTCGTCGGCGCAGGCACCACCGAGCGTTCAACAAAGGGGCCGG
GGTGGCGGTGTTGCTGTGGACGCGTTGCTGCAAGACGTTCGGAGCCTGGC
GAGGAGGCTAGAGGCGGCCAGGTCAGCAATGAGTCCGGAGCAGCTCGAAG
AAGTCGGCGCGCTCTTGCAGAAAGCGGTGGAGAGCTGAAGGGAAGGGGGG
GAGGACGACCACTCAGTCATTTTTTTTGTTCGTTCAAAACTACACGCGTT
GTTGTGTATGCCGAATGATTTTTTTTTTTTTGATGTCCTCCGGGAGTTCT
CAGCGTTTCACCAAGTTGTGTCCTCTCTTGTTGAGGTATTGGTGGTTTTT
GACATTTCTACTGCTTAGGTGTGTGGGTGCATCTTGGCTCTTCCAGTGAT
GTGACTTCTGACCTACTGTAGCGATACAACGCCGATTTGGAGTTTCGAAG
CTAGTTCTTCGAGTCCAACTGACGCAGTTTGTACCATCATGACACCTCGT
CTGTGCTGTCCGACTGCACAATTTTCGTCCTTCGAGCGTTCGCGTTGTAC
ATATGGGTATAGGATGATTGAGTTTTTGAGCGTAGAAAACAAGCATCATG
CGAAGGTGTGAATGAAGACCAATACGGTTGGAGAAAGTGATGGGGGGGGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGCGAAATCGTTCTC
GTGTGTGACAGAGGCTATATGCCCCGAGAGACTCAATCAAGGACAGTGAC
GCGAAAAGGCGTGCACATGACCGAGAAAAAGTCTCAGAGAAATAAAAAGA
GAATACGATTTTGATTCGAGAGTTATGCTGAGGGTAGAGGTACGGTTGTA
TGCAGGAGGGAAAGGGGGGAACCTAAACCCTCATAGCGCTGTGTTTTTGC
CTTTACATGTGACGTGCGTGGATAGAAACGACTTGTTGTTTTACCGTACT
TGGGTGACCTTCACGGGCGATGTGATCTCGAGAGTTGTGTGGAACAGAAG
CAGTACAGGGTATTCTAGGAGGGGGTGCAGTCCACAGTCCACGCACCATC
CCCTGGGTCGAAAGAAGTGGTCCTTGACTTTACGTTGTATACGCGTCGTG
ATGGTACATGCTTGT

protein sequence of EsuBft992_8a-0001

>EsuBft992_8 ID=EsuBft992_8|Name=EsuBft992_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=145bp
MTSASVGGASGGRDDADGFGHDQGDDTSMGGGAAASCASSKVDTAAAAAA
AEKEVATMAAIAKAMPSGGGGRHRHVEVESEMSEMSSSAQAPPSVQQRGR
GGGVAVDALLQDVRSLARRLEAARSAMSPEQLEEVGALLQKAVES

mRNA from alignment at Scaffold_539:822..2336+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft992_8a-0001 ID=EsuBft992_8a-0001|Name=EsuBft992_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1515bp|location=Sequence derived from alignment at Scaffold_539:822..2336+ (Ectocarpus subulatus male Bft15b)
ATGACCTCTGCGAGCGTCGGCGGAGCTTCTGGCGGCCGTGACGATGCTGA
TGGTTTCGGGCATGACCAGGGCGATGATACGTCCATGGGCGGCGGGGCCG
CCGCTAGTTGCGCTTCGAGCAAAGTCGACACCGCGGCGGCTGCAGCAGCA
GCCGAGAAGGAGGTTGCCACGATGGCGGCGATTGCTAAGGCTATGCCTAG
CGGTGGGGGGGGACGACACCGGCACGTCGAGGTCGAATCGGAGATGTCGG
AGATGTCTTCGTCGGCGCAGGCACCACCGAGCGTTCAACAAAGGGGCCGG
GGTGGCGGTGTTGCTGTGGACGCGTTGCTGCAAGACGTTCGGAGCCTGGC
GAGGAGGCTAGAGGCGGCCAGGTCAGCAATGAGTCCGGAGCAGCTCGAAG
AAGTCGGCGCGCTCTTGCAGAAAGCGGTGGAGAGCTGAAGGGAAGGGGGG
GAGGACGACCACTCAGTCATTTTTTTTGTTCGTTCAAAACTACACGCGTT
GTTGTGTATGCCGAATGATTTTTTTTTTTTTGATGTCCTCCGGGAGTTCT
CAGCGTTTCACCAAGTTGTGTCCTCTCTTGTTGAGGTATTGGTGGTTTTT
GACATTTCTACTGCTTAGGTGTGTGGGTGCATCTTGGCTCTTCCAGTGAT
GTGACTTCTGACCTACTGTAGCGATACAACGCCGATTTGGAGTTTCGAAG
CTAGTTCTTCGAGTCCAACTGACGCAGTTTGTACCATCATGACACCTCGT
CTGTGCTGTCCGACTGCACAATTTTCGTCCTTCGAGCGTTCGCGTTGTAC
ATATGGGTATAGGATGATTGAGTTTTTGAGCGTAGAAAACAAGCATCATG
CGAAGGTGTGAATGAAGACCAATACGGTTGGAGAAAGTGATGGGGGGGGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGCGAAATCGTTCTC
GTGTGTGACAGAGGCTATATGCCCCGAGAGACTCAATCAAGGACAGTGAC
GCGAAAAGGCGTGCACATGACCGAGAAAAAGTCTCAGAGAAATAAAAAGA
GAATACGATTTTGATTCGAGAGTTATGCTGAGGGTAGAGGTACGGTTGTA
TGCAGGAGGGAAAGGGGGGAACCTAAACCCTCATAGCGCTGTGTTTTTGC
CTTTACATGTGACGTGCGTGGATAGAAACGACTTGTTGTTTTACCGTACT
TGGGTGACCTTCACGGGCGATGTGATCTCGAGAGTTGTGTGGAACAGAAG
CAGTACAGGGTATTCTAGGAGGGGGTGCAGTCCACAGTCCACGCACCATC
CCCTGGGTCGAAAGAAGTGGTCCTTGACTTTACGTTGTATACGCGTCGTG
ATGGTACATGCTTGT

Coding sequence (CDS) from alignment at Scaffold_539:822..2336+

>EsuBft992_8a-0001 ID=EsuBft992_8a-0001|Name=EsuBft992_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=438bp|location=Sequence derived from alignment at Scaffold_539:822..2336+ (Ectocarpus subulatus male Bft15b)
ATGACCTCTGCGAGCGTCGGCGGAGCTTCTGGCGGCCGTGACGATGCTGA
TGGTTTCGGGCATGACCAGGGCGATGATACGTCCATGGGCGGCGGGGCCG
CCGCTAGTTGCGCTTCGAGCAAAGTCGACACCGCGGCGGCTGCAGCAGCA
GCCGAGAAGGAGGTTGCCACGATGGCGGCGATTGCTAAGGCTATGCCTAG
CGGTGGGGGGGGACGACACCGGCACGTCGAGGTCGAATCGGAGATGTCGG
AGATGTCTTCGTCGGCGCAGGCACCACCGAGCGTTCAACAAAGGGGCCGG
GGTGGCGGTGTTGCTGTGGACGCGTTGCTGCAAGACGTTCGGAGCCTGGC
GAGGAGGCTAGAGGCGGCCAGGTCAGCAATGAGTCCGGAGCAGCTCGAAG
AAGTCGGCGCGCTCTTGCAGAAAGCGGTGGAGAGCTGA