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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft992_6 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 8 |
Length | 223 |
Hectar predicted targeting category | other localisation |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft992_6a-0001 ID=EsuBft992_6a-0001|Name=EsuBft992_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2234bp|location=Sequence derived from alignment at Scaffold_539:13134..19148- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCATACAGCTATTGCTGTTGTGCCCATAGCCCCTAGCGCTGCGGTGCATC TGGGAGAGCAATGACACGTGAAACGTGCTACCATGAAGGTTGCTCTAAGG CGCCGTCTTTCGGATTCCCAAATGAAGAGCGGGTGTCGTGCTCGGCGCAC AAACGGCCTGGCCAGGAGTATCTGGCAGGGAAGGCGGAGCACCATCGTGG CGGAGCGGGGGATGCCCTGACGCTGGCGATGGGGCACGTTCCAAAAGGTT TGGACTACCGACACACTGCCGACCGGAAGCACGACCCCCATCACACGGCG AGGGCCGCTGGAGACGACGGAAAGCATTGCCAAGAAACAGGCTGCATGAG GGCACCAAGCTATGGGTGGGAAGGCGCAGCCGTCATGTGTGCTCTGCACA AGAAGCCGGCCATGGTGTACCTCCGGCACCCGTCTGACTCGTCGTCTTCT GGAAAGGATTCTGCCAATGTCAAGCCGACGGCCGACAAGGGGCATGTTCC CAAGGGGTTGGAGTACATCCCATCAGTCACCATGGATAGCGATCGTGTGG TGCACTCCGGCAACCCCCATTGCGCCGTCAAGGGCTGCACTAAGGCCCCC TCGTACGGTACGGAAGGCGAAGGAGGGGTGTACTGCTTTTCGCACAAGAG ACCCGGACAGGTGTTCCTGAAACGAGGTACTAAACCTGCTGGCACTGCTG CTGCTGCTGCTGCTGCTACAACTGTGCCGTCTGAGTCCAAGCGCAACAGG GTCACCACCGCCGCAGAATCTGACCATCTCAAGATTTGATTAGTGATGCG AGACGGTGAAGTACCAGGCTATTTTCTCCTGGATAGGTTGACGACGACGA CGACGACAACATCAACAACAGTTGCAACAATTATTCATCAGGCGCATCGC TCCCAATACCCTTCCGGTTTCTGAAAGCTGCGAAAGCTTGTCTCGGGACA CACGCACACGTTTTTTTTCTCCCCGTTCTGCTCGCGTTCGTTGTCGGCTC TCGTGCTCGTGTGCGTGTCTGCATAAAGCGTCTCAACAGCTCGATTCGTA AACCTTACGCCTGTAGCGCTGTGTCTTCCCCGATAGAGTGCACTGTCTCC ATATCCAGACGATCGACGACACATTATGTTGCTCGATGAATTAGTAAGCC ATATGGGGCGATATGCCACGAATTCTCGACCCGTTGCGCGATCGATATCT GGAACTCGTGGGGATTTGTGCGGCGTTCCTTGATGCCAACTTCCTTACGC GCCCGCCTATGCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCCCGCCCG TCGACCGCGGATTGTTTTTCTTCATCTTGGCTTTCGTTTCGCCACAAGGA ACAAGAAGAAGGTGCGCAACTGCGTGAGGCGTTAGTCACCGCTGACAATC GCTACACGGGGAGAGCGGTGTGATTCCGCGCGGCCTTTGCACGAGACGGC CACTGCTCGTGTTAAATACCTGTTCAAACAGACGTTTGTGCGCACGCTTT GTATCGCTTGTTTGGCCATGTGTATTTGTACAAATATGTGAGTTGGGAGT GCTGTTTATTGCTACTGAATGTACACAACGACGGTGCGCGTTAATTTCCC AGAAACGCTTGGTCTAGCCCTACAAATGCTGGCCTTGGTTGCATGTGGGT ACCTGCGGTGAGCAATTTCGTGCGAGAAGTTCACACTGCGGTCGAAGCGA TGTAGCATGGTGTGTAGATGCGAACGTTTGCCATCCCCCCCGCCTCACCG CTACGATTTTCAAGCCCATCGCACCACCTATGGCTCGAACCACATACCGG TGTGCATCTTGCGTGCATGATGTCGAGAGACAAGACACACGAAGTACTCC CACAATGCTCGACATCACCCTTAGCGTGAGTGACCGCCTTCTGCACTGCC ACGATAGTTTCCCCCAAGTGTTTTCGTGATGGAGACAGGAATGATGGAGA GGATTGATCATAGCGATGCCGTGTCCAGATCATCATGTTTCGGTGTTTTG CGAAACACACTACCCCACGCCAACCCCCCCGTCGAAGTGGGGCAAAAAGG CGAGGATTGACATCGATAGGATAGATTGGGTAGGGAACAACTTATGAGTC ACCTTTGGCAGCATAGGAAGGAACGATTGGCCGT back to topprotein sequence of EsuBft992_6a-0001 >EsuBft992_6 ID=EsuBft992_6|Name=EsuBft992_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=242bp
MTRETCYHEGCSKAPSFGFPNEERVSCSAHKRPGQEYLAGKAEHHRGGAG DALTLAMGHVPKGLDYRHTADRKHDPHHTARAAGDDGKHCQETGCMRAPS YGWEGAAVMCALHKKPAMVYLRHPSDSSSSGKDSANVKPTADKGHVPKGL EYIPSVTMDSDRVVHSGNPHCAVKGCTKAPSYGTEGEGGVYCFSHKRPGQ VFLKRGTKPAGTAAAAAAATTVPSESKRNRVTTAAESDHLKI back to topmRNA from alignment at Scaffold_539:13134..19148- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft992_6a-0001 ID=EsuBft992_6a-0001|Name=EsuBft992_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6015bp|location=Sequence derived from alignment at Scaffold_539:13134..19148- (Ectocarpus subulatus male Bft15b) TCATACAGCTATTGCTGTTGTGCCCATAGCCCCTAGCGCTGCGGTGCATC
TGGGAGAGCAATGACACGTGAAACGTGCTACCATGAAGGTTGCTCTAAGG
TGCGAAAACTCGTCCAATTGTCTGTAGTCTAGACTACAGCAGCAGCAGCG
GCAACTTGAAGGCGTACTTGTGAACCCCGTGTTCCATGTTGATATTTTGG
ATGCGGGGCCGCACCATGAAGGAGGGGGAAGTCCCCTCGACTGTGTCATC
CACCTCCAGCATTATACAACTACCACATCCCGTTCGCAGGTTTCGTTGCC
CGGGGCTCAACGCAGGTTAAACATAGAAAACGCTGCAAATAGACTAGCGC
AGGCCCAGTTGAAGGTTTGTTTGTGTCGCGCACTACTGGCATCATACAAG
TCGCTCCCTCAAAACCTGATTGGATCAACACTAAATAGAATATTCGGGGC
GTCTATGTAGTGCGTTGTGGTACAATGCGTAAGGGAGATCATCAACTGGA
TGGGTTACGGAGACAAAGTGTTAAAACTAACGAACAACGACGACCGAGCA
GAACCAAGATGCTAACGAGAGACTGGACTCAGCTCCAAAATCCAGCAACC
ACACCCGCTCTATCTCTCTCTTCATCGTGCCTCAATGGCAGACAAAACTA
GTGTATGCGTGGTCTTACTAGAGTTCTCTAGTCCTACCGACTACCCTCTA
ATAATCTATATGTCGTCCCCCGGTGTAGCCTTTATACACTCCGCTGGCGT
CTCCGCTTTGTTTGATGGATTGTGAACAGGCGCCGTCTTTCGGATTCCCA
AATGAAGAGCGGGTGTCGTGCTCGGCGCACAAACGGCCTGGCCAGGAGTA
TCTGGCAGGGAAGGCGGAGCACCATCGTGGCGGAGCGGGGGATGCCCTGA
CGCTGGTATTTCCAAGCTCTATGTCACAACAATGAGCACGCTCTCTTTGA
CATGCACGGAGTAAAACGTGCGAGCGAGTAAAGAAACCCACGGCTCGGTT
CGTTGTTGGCGGGTTGCTACGTTTGTCAAGCGTAAGGACTCTCTTAGTGC
ACCAAGCAGCACCAGCTATTATGTTTGTCATGATGCACACTATACTGGAT
CTGCCTGGGCTTATGAACTGCTGTCGCGTGGGAATACTTCGAAATATCAG
GGAATGATGCATGCCGTGCCGCGTAGTGATACCTGTCTTCGTTCTTCATT
GCCTATCTAATCTTCACTGCTCCTCTCGGACATGCGCTGCTTGAACACGT
CCAACGTATCCGTGTCGCACGCCTTCGCGATATAGAACGGTGACGTGTAG
TGTCGAGAGTGAGTGTTGCTGCTTAAGACTTTCCTTCCTTACGAATCCCT
GCGAAACCTGTTGACTTTTCATTCCACAGGCGATGGGGCACGTTCCAAAA
GGTTTGGACTACCGACACACTGCCGACCGGAAGCACGACCCCCATCACAC
GGCGAGGGCCGCTGGAGACGACGGAAAGCATTGCCAAGAAACAGGCTGCA
TGAGGGCACCAAGCTATGGGTGGGAAGGCGCAGCCGTCATGTGTGCTCTG
GTGTGTTCGTGTGTGGAACTTCCATTGATTTTGCACCCGAATGTACGCTG
GTGGTAGGCCAGGGGAGCAAGCGTGTGCTCTCTTGTAAACACGCCGAATA
GGGACTCGGCCGACATGAGATTGCCGGGAAATCAAACAACTGAAGAAGGT
GGCGTGTCGTCAGCACCAAGCGGTGTGATGGATTGCTGTTGTTCGAAAGG
TACGCACGGCGGGTGTTCCAATATTGAGTGAGCGAGGTCGAGGGAAACCG
ATGATAGGTGTGTACAGTAGCGTTTGCATCGGAGTTGATTCGCACCAACA
GAGAAGAGAAGGCCCGGATCAAAGCTTCACCCTCTGAAGTCTTCTACCCC
ATGGTGGGTACACTTTTATTGACAATGCAGGGCAGCGCACACGTTTGTAC
CGACCTCAAGGACACAAACAAGCGGAAGAGACTCAAGCTCGGGGAAGCAT
TCAAACGGAGTACGGGTAGTCGATCAAACGACAAGTTTGCCGCAACCTTC
CGGTTTGTTGGTATAGCCCTGGCAACAGCCACAACGTCAATAGCACTACC
ATTCACTTGTGTCACTTCCCCTGTCGGCTATTTTTTATCTGCGAAATAGA
TTACATGAAGTAATCCCCGCGCTCTTCTGCTTCGGCTGGTTGCTGTTGTT
CTGTACTCGTTCAGCACAAGAAGCCGGCCATGGTGTACCTCCGGCACCCG
TCTGACTCGTCGTCTTCTGGAAAGGATTCTGCCAATGTCAAGCCGACGGC
CGACAAGGGGCATGTTCCCAAGGGGTTGGAGTACATCCCATCAGGTTAAG
CACAACGCTGTTATCGAACCACCCGACCACAAGCCAGAGCTAGGTAGCAA
GAAGCACAGGGCCTGATTGCCCCGCTTGAATCTAGCCCATTGTGTAATGA
TTCTACGTAATCTGCCTGTCACCTAAGATGTGTGTAATGAGCTCCTTGAG
TCAATCGACCATGTCCTCCACGTACCCAATATTTGCGTTCTCTACCAAAC
TTCATTTCGTGATTCTTGTGACTACAGTACCTCTTCTTTGGCCAGCAACC
TGTAGGGATAAGTCATATTATTTCACCTTTTACTTTCTTTGACGTTTCCC
CGCACTAAACTTGACTGTCCGTGTCCCCCCCACTCACCACAACAGTCACC
ATGGATAGCGATCGTGTGGTGCACTCCGGCAACCCCCATTGCGCCGTCAA
GGGCTGCACTAAGGTATTTCCGCGGCCCAGCTTGCTTGTCGTTTTGAGAC
TTTCCCTCACATCATGTTCCTTTCACTCTCTGGTGACACGTCGCCTAGCA
GCCGCAAAGATGCCCTCGAGACCATCCAATGTTCCGAGACTTGAGACTGA
CAAAACACGCCAATATATGAGGAAACTCCCACCTTGATTATTTGCCAACG
GTCCCCGCAAGGGGAGGTGTCAACCTCTGCTTTGGGTTCCTTCAAGGTCC
GACACCTGTAAGGGACACGAACGACACTGGTAGTGGAAACTACCAAAGAT
GAAGCAGTGCATTCGATGAAGCTAAACTTTGTTAGGCTTCCTATGGCGTT
TCTTTTCAATTGCTAAAAGGAACTAGGCAGCTGGTTCTTCGGCCGTTGTC
GTAAAGTTTTAGTTGTTTAGTTTGGAATGCGGCACGAACACGGAGTGACC
GTTTCCGCCGCTCTCTTTATGTTGTTAGTACGATGATAGTGGAATGACAA
GAGGAAGCGATAGCCCGATGTGACTGCGCATGGTAAGGAGGCGGGATGCT
TTCTAGGGGGATAAAGTCCTGGCATGCGTTTCAATTGTTTTTCTGTCGCA
GTACGGTGTGTTTTGGGGGGGAACTGGGCCTTACTGTATGATGTAGGAAA
AAAGGTGGAATCCTGATATTGCATCCATATCATTGAAAGAGCAACCGTCA
AGAAGACTGAACCAGTCACTGCTGTTCACCCTCGACATCGACAGAGCTAG
TTCATTTCGAACACTGCCACCTTCTTTCGTCGCCGAAAGGCTCTGTTTTC
GTTCGCGAACCTGGTAGATCTCTCTCTCCTACACAAAACGCGTTATGCAT
GTTGCTCTCTGTCTCACACAAAAGCGCTCTCGAGCTTGCCCAATGTCATG
TAATAACAAATCTTCTTCCCATCTTTCTTCCTTCTGCTCCACCCACGGCA
GGCCCCCTCGTACGGTACGGAAGGCGAAGGAGGGGTGTACTGCTTTTCGC
ACAAGAGACCCGGACAGGTGATCTATCTTGATGATGATGGTTCCGACAAC
ATACCCTACTGTGCCCATCTTGACGAGCAGGAATTGGCCTCGACAGACGA
TAGGGAGATTGAGTCCTTTTGTAATGGTCATGTCCACACCCATGCTAGTA
AATTGTGGTCCTCTGTAGGGATGAATTCCGACCCATCAGCACTAACTAAT
CCTCAACCTTCACCGTAATCCAAGTCATAAGCAGGCAGAGGCAGCAGGCT
ATGTTCAAAGCGAACAGGATACCCACGATGCAGGTACACCAGCCGGCACT
ATTCAGAGAAGAACATTTGAGGGCGGTGGTTTGACAGAAGATGGAATGAG
GTATGCCGCACAAATCGGTACAACCCTCCCCACCCAAAGGCTCTCTTGGT
GTCGAGAAGAGAATATTCCAGTCAGGTGATTTGCTTGTACAACTATCCAT
CCACCCATTCACCCACCACATAACGCCTCGTGGCTATTCTTGCGCGGTTG
GCTATTGGCTCCCCTGCCATAGGTGTTCCTGAAACGAGGTACTAAACCTG
CTGGCACTGCTGCTGCTGCTGCTGCTGCTACAACTGTGCCGTCTGAGTCC
AAGCGCAACAGGGTCACCACCGCCGCAGAATCTGACCATCTCAAGGTACT
TTCTTGTCCGTCGAATACACGCATGCATGACGCCTTTCAAACGCAGTTGA
CATGTATATCCTTGAGTCCTTACCACATTATCTTTGATCCGAGAAGGGAA
AATAATGATGGTTGTTCATTGTAACGGCCTGGTGTGCACATTCCAAAACA
ACCGTCCACTGCAGATTTGATTAGTGATGCGAGACGGTGAAGTACCAGGC
TATTTTCTCCTGGATAGGTTGACGACGACGACGACGACAACATCAACAAC
AGTTGCAACAATTATTCATCAGGCGCATCGCTCCCAATACCCTTCCGGTT
TCTGAAAGCTGCGAAAGCTTGTCTCGGGACACACGCACACGTTTTTTTTC
TCCCCGTTCTGCTCGCGTTCGTTGTCGGCTCTCGTGCTCGTGTGCGTGTC
TGCATAAAGCGTCTCAACAGCTCGATTCGTAAACCTTACGCCTGTAGCGC
TGTGTCTTCCCCGATAGAGTGCACTGTCTCCATATCCAGACGATCGACGA
CACATTATGTTGCTCGATGAATTAGTAAGCCATATGGGGCGATATGCCAC
GAATTCTCGACCCGTTGCGCGATCGATATCTGGAACTCGTGGGGATTTGT
GCGGCGTTCCTTGATGCCAACTTCCTTACGCGCCCGCCTATGCATCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCGCCCGCCCGTCGACCGCGGATTGTTTTT
CTTCATCTTGGCTTTCGTTTCGCCACAAGGAACAAGAAGAAGGTGCGCAA
CTGCGTGAGGCGTTAGTCACCGCTGACAATCGCTACACGGGGAGAGCGGT
GTGATTCCGCGCGGCCTTTGCACGAGACGGCCACTGCTCGTGTTAAATAC
CTGTTCAAACAGACGTTTGTGCGCACGCTTTGTATCGCTTGTTTGGCCAT
GTGTATTTGTACAAATATGTGAGTTGGGAGTGCTGTTTATTGCTACTGAA
TGTACACAACGACGGTGCGCGTTAATTTCCCAGAAACGCTTGGTCTAGCC
CTACAAATGCTGGCCTTGGTTGCATGTGGGTACCTGCGGTGAGCAATTTC
GTGCGAGAAGTTCACACTGCGGTCGAAGCGATGTAGCATGGTGTGTAGAT
GCGAACGTTTGCCATCCCCCCCGCCTCACCGCTACGATTTTCAAGCCCAT
CGCACCACCTATGGCTCGAACCACATACCGGTGTGCATCTTGCGTGCATG
ATGTCGAGAGACAAGACACACGAAGTACTCCCACAATGCTCGACATCACC
CTTAGCGTGAGTGACCGCCTTCTGCACTGCCACGATAGTTTCCCCCAAGT
GTTTTCGTGATGGAGACAGGAATGATGGAGAGGATTGATCATAGCGATGC
CGTGTCCAGATCATCATGTTTCGGTGTTTTGCGAAACACACTACCCCACG
CCAACCCCCCCGTCGAAGTGGGGCAAAAAGGCGAGGATTGACATCGATAG
GATAGATTGGGTAGGGAACAACTTATGAGTCACCTTTGGCAGCATAGGAA
GGAACGATTGGCCGT back to topCoding sequence (CDS) from alignment at Scaffold_539:13134..19148- >EsuBft992_6a-0001 ID=EsuBft992_6a-0001|Name=EsuBft992_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=729bp|location=Sequence derived from alignment at Scaffold_539:13134..19148- (Ectocarpus subulatus male Bft15b) ATGACACGTGAAACGTGCTACCATGAAGGTTGCTCTAAGGCGCCGTCTTT CGGATTCCCAAATGAAGAGCGGGTGTCGTGCTCGGCGCACAAACGGCCTG GCCAGGAGTATCTGGCAGGGAAGGCGGAGCACCATCGTGGCGGAGCGGGG GATGCCCTGACGCTGGCGATGGGGCACGTTCCAAAAGGTTTGGACTACCG ACACACTGCCGACCGGAAGCACGACCCCCATCACACGGCGAGGGCCGCTG GAGACGACGGAAAGCATTGCCAAGAAACAGGCTGCATGAGGGCACCAAGC TATGGGTGGGAAGGCGCAGCCGTCATGTGTGCTCTGCACAAGAAGCCGGC CATGGTGTACCTCCGGCACCCGTCTGACTCGTCGTCTTCTGGAAAGGATT CTGCCAATGTCAAGCCGACGGCCGACAAGGGGCATGTTCCCAAGGGGTTG GAGTACATCCCATCAGTCACCATGGATAGCGATCGTGTGGTGCACTCCGG CAACCCCCATTGCGCCGTCAAGGGCTGCACTAAGGCCCCCTCGTACGGTA CGGAAGGCGAAGGAGGGGTGTACTGCTTTTCGCACAAGAGACCCGGACAG GTGTTCCTGAAACGAGGTACTAAACCTGCTGGCACTGCTGCTGCTGCTGC TGCTGCTACAACTGTGCCGTCTGAGTCCAAGCGCAACAGGGTCACCACCG CCGCAGAATCTGACCATCTCAAGATTTGA back to top
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