EsuBft991_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft991_3a-0001
Unique Name	EsuBft991_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_222	contig	Scaffold_222:400243..401481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4792.ETI30258
ProteomeId	EsuBft991_3
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	123
Hectar predicted targeting category	other localisation
Evalue	0.00053
EggNOG OGs	2ESHN@1\|root,2SV2M@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft991_3a	EsuBft991_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_222 400243..401481 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft991_3a-0001-exon	EsuBft991_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_222 400243..401481 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft991_3a-0001-exon	agat-five_prime_utr-15558	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_222 400243..400458 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft991_3a-0001-cds	EsuBft991_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_222 400459..401202 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft991_3a-0001-exon	agat-three_prime_utr-23854	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_222 401203..401481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft991_3a-0001	EsuBft991_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_222 400459..401202 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_222:400243..401481+
coding sequence from alignment at Scaffold_222:400243..401481+

spliced messenger RNA

>EsuBft991_3a-0001 ID=EsuBft991_3a-0001|Name=EsuBft991_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1239bp|location=Sequence derived from alignment at Scaffold_222:400243..401481+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTCCCCGCTTTAAAGACACTCTTCTTAAGGAAACTCCCAGCTAAAGA
CACATTTTCCCCCCAGAACATGGTGCCGCGCAGATGTACAATAATATAGG
GGGGTAGCGTTTCCACTATGCGCCCCCCCCAAAAAACATTTTGCTGGGGC
AGCAAATCTGTAAGGCATTGTAGCATCGACAGCGGTCTGCTGCAACCCGC
ACTACTACGTGTGGGTATGGAGAGGTTCCTCCCATCTGCTGGCGGGTCGT
CAGCTGCCGGTTTGAGGCCATGTGGCGAACCCACGTGCCAGCAAAAGTCT
CAACTCGTGTCAGCGGTTCACCAGTGCCCGTGCGGGCGATCCATGCACGC
GTTTTGTGGTCGGGGCATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGT
GCTCGGATTGCCAGAAGAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGC
AGTCCCATGGAAGTGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGA
CTTGGACGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCG
AGAGCACCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACG
TGGCTTAGTGTAGAGGACGATGAAGAGGTCTTGAGGGAAGAGGTAGAACT
CGAGATGGAAGAGGTAACGGAGAACATGTCAAGAGTACACGTCGAAGACG
ACGTGTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATG
ACATCTACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCG
CTCCTATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGAAACGGTGT
ACCTTCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTCAAGTCAAG
CGAAGAACGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTG
GGCGACGTAGTTTTTGGTGTTTGAGGACAACACACTTGGCAGCCCACATT
CATTGTTTGGGATTTTTTTGCCTTTCTCGTGGAGTTAAATTTTGGCATTT
TTTGTTTTGTGTTTTTGCCTCGTGTTGACCTTTGGGGAAGAGCGGTGTTC
TCTTTTCGGTGGGTTTGCCCGATTTTTTGTATGTTGTGGTCTGCGCTACC
GACCGTTTCCTAGTGTCCCTCAGATCCCTCTAAGGGGTCGACTGGGTTTG
TTTGGTCCCTATGTGGCAGGTAACTTGCGTGTATCGTAT

protein sequence of EsuBft991_3a-0001

>EsuBft991_3 ID=EsuBft991_3|Name=EsuBft991_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MERFLPSAGGSSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRG
IGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVVKKMSLPESAKDLDARS
MPRVLSDNLFVESTSGLTEQEVRSAVSTWLSVEDDEEVLREEVELEMEEV
TENMSRVHVEDDVSSEEEDQDGRQESCMTSTISEAEVRSRLEDVRSYLYA
NGRDGEYSETVYLLSKTVHSFTHETQVKRRTKEGGEVQATLRDVWAT

mRNA from alignment at Scaffold_222:400243..401481+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft991_3a-0001 ID=EsuBft991_3a-0001|Name=EsuBft991_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1239bp|location=Sequence derived from alignment at Scaffold_222:400243..401481+ (Ectocarpus subulatus male Bft15b)
GTCGTCCCCGCTTTAAAGACACTCTTCTTAAGGAAACTCCCAGCTAAAGA
CACATTTTCCCCCCAGAACATGGTGCCGCGCAGATGTACAATAATATAGG
GGGGTAGCGTTTCCACTATGCGCCCCCCCCAAAAAACATTTTGCTGGGGC
AGCAAATCTGTAAGGCATTGTAGCATCGACAGCGGTCTGCTGCAACCCGC
ACTACTACGTGTGGGTATGGAGAGGTTCCTCCCATCTGCTGGCGGGTCGT
CAGCTGCCGGTTTGAGGCCATGTGGCGAACCCACGTGCCAGCAAAAGTCT
CAACTCGTGTCAGCGGTTCACCAGTGCCCGTGCGGGCGATCCATGCACGC
GTTTTGTGGTCGGGGCATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGT
GCTCGGATTGCCAGAAGAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGC
AGTCCCATGGAAGTGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGA
CTTGGACGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCG
AGAGCACCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACG
TGGCTTAGTGTAGAGGACGATGAAGAGGTCTTGAGGGAAGAGGTAGAACT
CGAGATGGAAGAGGTAACGGAGAACATGTCAAGAGTACACGTCGAAGACG
ACGTGTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATG
ACATCTACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCG
CTCCTATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGAAACGGTGT
ACCTTCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTCAAGTCAAG
CGAAGAACGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTG
GGCGACGTAGTTTTTGGTGTTTGAGGACAACACACTTGGCAGCCCACATT
CATTGTTTGGGATTTTTTTGCCTTTCTCGTGGAGTTAAATTTTGGCATTT
TTTGTTTTGTGTTTTTGCCTCGTGTTGACCTTTGGGGAAGAGCGGTGTTC
TCTTTTCGGTGGGTTTGCCCGATTTTTTGTATGTTGTGGTCTGCGCTACC
GACCGTTTCCTAGTGTCCCTCAGATCCCTCTAAGGGGTCGACTGGGTTTG
TTTGGTCCCTATGTGGCAGGTAACTTGCGTGTATCGTAT

Coding sequence (CDS) from alignment at Scaffold_222:400243..401481+

>EsuBft991_3a-0001 ID=EsuBft991_3a-0001|Name=EsuBft991_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_222:400243..401481+ (Ectocarpus subulatus male Bft15b)
ATGGAGAGGTTCCTCCCATCTGCTGGCGGGTCGTCAGCTGCCGGTTTGAG
GCCATGTGGCGAACCCACGTGCCAGCAAAAGTCTCAACTCGTGTCAGCGG
TTCACCAGTGCCCGTGCGGGCGATCCATGCACGCGTTTTGTGGTCGGGGC
ATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGTGCTCGGATTGCCAGAA
GAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGCAGTCCCATGGAAGTGG
TCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGACTTGGACGCTAGGTCC
ATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCGAGAGCACCTCCGGCCT
CACTGAACAAGAAGTGCGGAGCGCAGTGAGCACGTGGCTTAGTGTAGAGG
ACGATGAAGAGGTCTTGAGGGAAGAGGTAGAACTCGAGATGGAAGAGGTA
ACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGTGTCCAGTGAAGA
GGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGACATCTACGATTTCAG
AGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCGCTCCTATTTGTACGCG
AACGGAAGAGACGGCGAGTACAGCGAAACGGTGTACCTTCTTTCGAAGAC
TGTGCATTCGTTCACTCATGAAACTCAAGTCAAGCGAAGAACGAAGGAGG
GGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTGGGCGACGTAG