EsuBft990_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft990_8a-0001
Unique Name	EsuBft990_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:1481839..1484478 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7029.ACYPI24114-PA
ProteomeId	EsuBft990_8
Protein domains	IPR001584
Protein domains	IPR012337
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	33208\|Metazoa
Length	2280
Hectar predicted targeting category	other localisation
Evalue	1.85e-84
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SQRW@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft990_8a	EsuBft990_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 1481839..1484478 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_8a-0001-exon	agat-exon-86451	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1481839..1482033 +
EsuBft990_8a-0001-exon	agat-exon-86452	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1482082..1482485 +
EsuBft990_8a-0001-exon	agat-exon-86453	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1482644..1482739 +
EsuBft990_8a-0001-exon	EsuBft990_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1482894..1484478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_8a-0001-cds	EsuBft990_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 1481839..1482033 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_8a-0001	EsuBft990_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 1481839..1484478 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:1481839..1484478+
coding sequence from alignment at Scaffold_630:1481839..1484478+

spliced messenger RNA

>EsuBft990_8a-0001 ID=EsuBft990_8a-0001|Name=EsuBft990_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2280bp|location=Sequence derived from alignment at Scaffold_630:1481839..1484478+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACTGATGACCTCTCTCGCATGAGGTTTGTCTTTCTCCTGAAAAC
GAAAGATGGGGTGGCGGAGTCGCTCCAAGAGCTTATCCAGAACGAAGCGG
ATCCTTTGGGGATCTGCATCGGCAAGGTGCACTGCGATGGCAGAGCAGAC
TTCAAGGGCAGGTTCCAAGCGTTGTGTGAGTCCATGGGGATCAAGGGTGC
CGTTATGTTTACTGATGACCTCTCTCGCATGAGGTTTGTCTTTCTCCTGA
AAACGAAAGATGGGGTGGCGGAGTCGCTCCAAGAGCTTATCCAGAACGAA
GCGGATCCTTTGGGGATCTGCATCGGCAAGGTGCACTGCGATGGCAGAGC
AGACTTCAAGGGCAGGTTCCAAGCGTTGTGTGAGTCCATGGGGATCAAGG
TCGATGATAGCCCTTCCTACGTGCCGCAAGGGAACGCCATCGCCGAACGT
GGATTTGGCACCATCTTCGGAATGGCGCGCAAGCTACTCCTGGGAGCACC
CCACCTTCCAGGCCATCTGTGGGGCGAAGCATTCCATACAGTTATCTACC
TCAAGAATCGCACACCAAGGAGGATCTGGGCGGAAAGGCCCCACTCGAGG
CTGTGGGAACCAGCGGAGCCCCTCAAGATCGCAAACTCCGCTGAGGTGTC
ATTTCGTGAGAAAGAGACTCGCGACGTGGTCAAACCCAAGGAAGGGGTCT
CCATCGCACCGGAGAGGATGAATCTGCATACGACGGAGGAGGTGTACGAG
CGGACCGAGCATGCCCTGTTGACGGGTAGTGTGCTCGGAAATATCGGCAC
TGGTCGCCCCGGTGAGGCGGGCTACAGGCCTGCTGATCCCGTGAGCTATG
ACGCAGCGGTCAACGGCACGGAGGAAACACTCTGGAAAGAAAGCGTCAGC
GACGAGGGGAATTCGCTATACAAACATGACGTGTTCGACTGGGTGGATCC
GCCGAAGAACTCTGAACCGATCCCGTCTAGGTTCCATTTCGTGTGGAAGT
ACAATCAGGACGGCGTGGCGGTTCGCGCGAAAACTCGTGTGATGGTGCAA
GGCTTCTACGAAGCTGATACGGGGGCCGACAAGGCGGCGCCGGTGGCGTC
CATGGAATCCGTACACATGGTGTTAGCAGTTGCTGCCCACAACCATCTCG
TGCTGAAGCAAGCGGATATCAGGACGGCACTTTTACATGCCAGAATCCCC
GAGGATGCGGAGCCTACATACGTCATATCGCCAAAGGGATTCCCGTGTTC
GCCGGGTCAAAGTAATCAAGTCTGGGTTCTCAAGGCGTGGCTCTATGGCC
TGCGCCTCTCCCCGAAGGGATGGAACGGTACTCTTTATGTCTTTCTGCTG
GAGCTTGGCTTTGTGCAGAGCACCGCAGACCCGTGCCTTTACTCACTGCA
AGACGGAGATTTACTTGTGCTTGTATACGTGAGCGACATCATGTTCACCG
GCACCAATGACGATCTGGTGACGACGGTAATTTCGCAGCTGAAGGAAAGG
TTCGAAAAGGTGGATCTGGGGGATGCGGAATTCCTTCTGGGAATGGCCAT
TCAGCGCCATCTCAACGCCGGAACACTTCTCCTGACGCAAGAGGCGTACA
CCAAGGCCGTGCTGGCTAAGTTCAACATGGCTGACGCACACCCGACGAAG
ACGCCGGCTGAGGTTGGGCCGACCAGTACGGCGGAGGATAAAGTGCTGTC
GCCAGAGGGCACCAAGAAGTTCCGGTTGGCTACGGGTTCGGTTCTTCACC
TTTGCAGGGGAACGAGGCCGGACATTGCACACTCAGTGTTGGTGTTTACC
AGGAGCATGGCGAAACCGGGACCGAAGGCGATGGCCAAGCTGAAGCGGCT
GCTTCGGTACCTAAAGGGGACCACCTCCATCGGAATCACGTACAGCGAGG
ATGCCGAGGATGGAGACAAACTAACGGCGTACGCTGACTCGGACTTCGGA
GGTGATCTAGACGACCGGAAGCCGACTACGGGGATCGTCCTATTCCTAGC
TGGTGGGCCGGTGGACTGGAGGGCGGCTAAACAACCGCTGGTGGCCGCCT
CATCGGTGGAGGCGGAGTGCGTGGCGTTGTCCAGGGCTAGCCAGCTCATC
ATCCCCTTCCGGCACCTACTGAAGACTGTAAACCGTGCCCAGAAGGAGGC
AACGGTGCTTTACGAGGATAACTCCGGGGCTATATTGACTAGCCTTAGCT
CCACGATCACGCCCAGGACCAAGCATATTGATATCAAGTATCACCACATC
AGGTCGCTAATCCAGGATGGAGTCGTATAG

protein sequence of EsuBft990_8a-0001

>EsuBft990_8 ID=EsuBft990_8|Name=EsuBft990_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=759bp
MFTDDLSRMRFVFLLKTKDGVAESLQELIQNEADPLGICIGKVHCDGRAD
FKGRFQALCESMGIKGAVMFTDDLSRMRFVFLLKTKDGVAESLQELIQNE
ADPLGICIGKVHCDGRADFKGRFQALCESMGIKVDDSPSYVPQGNAIAER
GFGTIFGMARKLLLGAPHLPGHLWGEAFHTVIYLKNRTPRRIWAERPHSR
LWEPAEPLKIANSAEVSFREKETRDVVKPKEGVSIAPERMNLHTTEEVYE
RTEHALLTGSVLGNIGTGRPGEAGYRPADPVSYDAAVNGTEETLWKESVS
DEGNSLYKHDVFDWVDPPKNSEPIPSRFHFVWKYNQDGVAVRAKTRVMVQ
GFYEADTGADKAAPVASMESVHMVLAVAAHNHLVLKQADIRTALLHARIP
EDAEPTYVISPKGFPCSPGQSNQVWVLKAWLYGLRLSPKGWNGTLYVFLL
ELGFVQSTADPCLYSLQDGDLLVLVYVSDIMFTGTNDDLVTTVISQLKER
FEKVDLGDAEFLLGMAIQRHLNAGTLLLTQEAYTKAVLAKFNMADAHPTK
TPAEVGPTSTAEDKVLSPEGTKKFRLATGSVLHLCRGTRPDIAHSVLVFT
RSMAKPGPKAMAKLKRLLRYLKGTTSIGITYSEDAEDGDKLTAYADSDFG
GDLDDRKPTTGIVLFLAGGPVDWRAAKQPLVAASSVEAECVALSRASQLI
IPFRHLLKTVNRAQKEATVLYEDNSGAILTSLSSTITPRTKHIDIKYHHI
RSLIQDGVV

mRNA from alignment at Scaffold_630:1481839..1484478+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft990_8a-0001 ID=EsuBft990_8a-0001|Name=EsuBft990_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2640bp|location=Sequence derived from alignment at Scaffold_630:1481839..1484478+ (Ectocarpus subulatus male Bft15b)
ATGTTTACTGATGACCTCTCTCGCATGAGGTTTGTCTTTCTCCTGAAAAC
GAAAGATGGGGTGGCGGAGTCGCTCCAAGAGCTTATCCAGAACGAAGCGG
ATCCTTTGGGGATCTGCATCGGCAAGGTGCACTGCGATGGCAGAGCAGAC
TTCAAGGGCAGGTTCCAAGCGTTGTGTGAGTCCATGGGGATCAAGGTCGA
NATGTGGGGGCCGCACCCTTTCAAGTCACCCGGCGGTTGACAGGGTGCCG
TTATGTTTACTGATGACCTCTCTCGCATGAGGTTTGTCTTTCTCCTGAAA
ACGAAAGATGGGGTGGCGGAGTCGCTCCAAGAGCTTATCCAGAACGAAGC
GGATCCTTTGGGGATCTGCATCGGCAAGGTGCACTGCGATGGCAGAGCAG
ACTTCAAGGGCAGGTTCCAAGCGTTGTGTGAGTCCATGGGGATCAAGGTC
GATGATAGCCCTTCCTACGTGCCGCAAGGGAACGCCATCGCCGAACGTGG
ATTTGGCACCATCTTCGGAATGGCGCGCAAGCTACTCCTGGGAGCACCCC
ACCTTCCAGGCCATCTGTGGGGCGAAGCATTCCATACAGTTATCTACCTC
AAGAATCGCACACCAAGGAGGATCTGGGCGGAAAGGCCCCACTCGAGGTG
TGGGAGGGGAGACCGCTCGGTGACATGTCGCACATCCACGAATGGGGCTC
GGTAGCCTATAAGCATGAAGAAGCGCGATTCCGGAACACCAAGCTGTCAG
CTAGGGCCAAGAAGATGTATCATGTGGGGTACAACACTAAAAATAGGACA
TACAGGCTGTGGGAACCAGCGGAGCCCCTCAAGATCGCAAACTCCGCTGA
GGTGTCATTTCGTGAGAAAGAGACTCGCGACGTGGTCAAACCCAAGGAAG
GGTAAGACCCGTTCTCAGCGATGACTCCAACCGCCATCTATCTGCCAGAC
ATGGTGGACACTAACGAAGAAGAAAACAAAAAAATAACAAGAAGAAGTAA
CACCAACGCCATCGGGACCCCAAAAGGAGGATTCGAACCTACGTCGGAGC
GGCAGGGTCTCCATCGCACCGGAGAGGATGAATCTGCATACGACGGAGGA
GGTGTACGAGCGGACCGAGCATGCCCTGTTGACGGGTAGTGTGCTCGGAA
ATATCGGCACTGGTCGCCCCGGTGAGGCGGGCTACAGGCCTGCTGATCCC
GTGAGCTATGACGCAGCGGTCAACGGCACGGAGGAAACACTCTGGAAAGA
AAGCGTCAGCGACGAGGGGAATTCGCTATACAAACATGACGTGTTCGACT
GGGTGGATCCGCCGAAGAACTCTGAACCGATCCCGTCTAGGTTCCATTTC
GTGTGGAAGTACAATCAGGACGGCGTGGCGGTTCGCGCGAAAACTCGTGT
GATGGTGCAAGGCTTCTACGAAGCTGATACGGGGGCCGACAAGGCGGCGC
CGGTGGCGTCCATGGAATCCGTACACATGGTGTTAGCAGTTGCTGCCCAC
AACCATCTCGTGCTGAAGCAAGCGGATATCAGGACGGCACTTTTACATGC
CAGAATCCCCGAGGATGCGGAGCCTACATACGTCATATCGCCAAAGGGAT
TCCCGTGTTCGCCGGGTCAAAGTAATCAAGTCTGGGTTCTCAAGGCGTGG
CTCTATGGCCTGCGCCTCTCCCCGAAGGGATGGAACGGTACTCTTTATGT
CTTTCTGCTGGAGCTTGGCTTTGTGCAGAGCACCGCAGACCCGTGCCTTT
ACTCACTGCAAGACGGAGATTTACTTGTGCTTGTATACGTGAGCGACATC
ATGTTCACCGGCACCAATGACGATCTGGTGACGACGGTAATTTCGCAGCT
GAAGGAAAGGTTCGAAAAGGTGGATCTGGGGGATGCGGAATTCCTTCTGG
GAATGGCCATTCAGCGCCATCTCAACGCCGGAACACTTCTCCTGACGCAA
GAGGCGTACACCAAGGCCGTGCTGGCTAAGTTCAACATGGCTGACGCACA
CCCGACGAAGACGCCGGCTGAGGTTGGGCCGACCAGTACGGCGGAGGATA
AAGTGCTGTCGCCAGAGGGCACCAAGAAGTTCCGGTTGGCTACGGGTTCG
GTTCTTCACCTTTGCAGGGGAACGAGGCCGGACATTGCACACTCAGTGTT
GGTGTTTACCAGGAGCATGGCGAAACCGGGACCGAAGGCGATGGCCAAGC
TGAAGCGGCTGCTTCGGTACCTAAAGGGGACCACCTCCATCGGAATCACG
TACAGCGAGGATGCCGAGGATGGAGACAAACTAACGGCGTACGCTGACTC
GGACTTCGGAGGTGATCTAGACGACCGGAAGCCGACTACGGGGATCGTCC
TATTCCTAGCTGGTGGGCCGGTGGACTGGAGGGCGGCTAAACAACCGCTG
GTGGCCGCCTCATCGGTGGAGGCGGAGTGCGTGGCGTTGTCCAGGGCTAG
CCAGCTCATCATCCCCTTCCGGCACCTACTGAAGACTGTAAACCGTGCCC
AGAAGGAGGCAACGGTGCTTTACGAGGATAACTCCGGGGCTATATTGACT
AGCCTTAGCTCCACGATCACGCCCAGGACCAAGCATATTGATATCAAGTA
TCACCACATCAGGTCGCTAATCCAGGATGGAGTCGTATAG

Coding sequence (CDS) from alignment at Scaffold_630:1481839..1484478+

>EsuBft990_8a-0001 ID=EsuBft990_8a-0001|Name=EsuBft990_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2280bp|location=Sequence derived from alignment at Scaffold_630:1481839..1484478+ (Ectocarpus subulatus male Bft15b)
ATGTTTACTGATGACCTCTCTCGCATGAGGTTTGTCTTTCTCCTGAAAAC
GAAAGATGGGGTGGCGGAGTCGCTCCAAGAGCTTATCCAGAACGAAGCGG
ATCCTTTGGGGATCTGCATCGGCAAGGTGCACTGCGATGGCAGAGCAGAC
TTCAAGGGCAGGTTCCAAGCGTTGTGTGAGTCCATGGGGATCAAGGGTGC
CGTTATGTTTACTGATGACCTCTCTCGCATGAGGTTTGTCTTTCTCCTGA
AAACGAAAGATGGGGTGGCGGAGTCGCTCCAAGAGCTTATCCAGAACGAA
GCGGATCCTTTGGGGATCTGCATCGGCAAGGTGCACTGCGATGGCAGAGC
AGACTTCAAGGGCAGGTTCCAAGCGTTGTGTGAGTCCATGGGGATCAAGG
TCGATGATAGCCCTTCCTACGTGCCGCAAGGGAACGCCATCGCCGAACGT
GGATTTGGCACCATCTTCGGAATGGCGCGCAAGCTACTCCTGGGAGCACC
CCACCTTCCAGGCCATCTGTGGGGCGAAGCATTCCATACAGTTATCTACC
TCAAGAATCGCACACCAAGGAGGATCTGGGCGGAAAGGCCCCACTCGAGG
CTGTGGGAACCAGCGGAGCCCCTCAAGATCGCAAACTCCGCTGAGGTGTC
ATTTCGTGAGAAAGAGACTCGCGACGTGGTCAAACCCAAGGAAGGGGTCT
CCATCGCACCGGAGAGGATGAATCTGCATACGACGGAGGAGGTGTACGAG
CGGACCGAGCATGCCCTGTTGACGGGTAGTGTGCTCGGAAATATCGGCAC
TGGTCGCCCCGGTGAGGCGGGCTACAGGCCTGCTGATCCCGTGAGCTATG
ACGCAGCGGTCAACGGCACGGAGGAAACACTCTGGAAAGAAAGCGTCAGC
GACGAGGGGAATTCGCTATACAAACATGACGTGTTCGACTGGGTGGATCC
GCCGAAGAACTCTGAACCGATCCCGTCTAGGTTCCATTTCGTGTGGAAGT
ACAATCAGGACGGCGTGGCGGTTCGCGCGAAAACTCGTGTGATGGTGCAA
GGCTTCTACGAAGCTGATACGGGGGCCGACAAGGCGGCGCCGGTGGCGTC
CATGGAATCCGTACACATGGTGTTAGCAGTTGCTGCCCACAACCATCTCG
TGCTGAAGCAAGCGGATATCAGGACGGCACTTTTACATGCCAGAATCCCC
GAGGATGCGGAGCCTACATACGTCATATCGCCAAAGGGATTCCCGTGTTC
GCCGGGTCAAAGTAATCAAGTCTGGGTTCTCAAGGCGTGGCTCTATGGCC
TGCGCCTCTCCCCGAAGGGATGGAACGGTACTCTTTATGTCTTTCTGCTG
GAGCTTGGCTTTGTGCAGAGCACCGCAGACCCGTGCCTTTACTCACTGCA
AGACGGAGATTTACTTGTGCTTGTATACGTGAGCGACATCATGTTCACCG
GCACCAATGACGATCTGGTGACGACGGTAATTTCGCAGCTGAAGGAAAGG
TTCGAAAAGGTGGATCTGGGGGATGCGGAATTCCTTCTGGGAATGGCCAT
TCAGCGCCATCTCAACGCCGGAACACTTCTCCTGACGCAAGAGGCGTACA
CCAAGGCCGTGCTGGCTAAGTTCAACATGGCTGACGCACACCCGACGAAG
ACGCCGGCTGAGGTTGGGCCGACCAGTACGGCGGAGGATAAAGTGCTGTC
GCCAGAGGGCACCAAGAAGTTCCGGTTGGCTACGGGTTCGGTTCTTCACC
TTTGCAGGGGAACGAGGCCGGACATTGCACACTCAGTGTTGGTGTTTACC
AGGAGCATGGCGAAACCGGGACCGAAGGCGATGGCCAAGCTGAAGCGGCT
GCTTCGGTACCTAAAGGGGACCACCTCCATCGGAATCACGTACAGCGAGG
ATGCCGAGGATGGAGACAAACTAACGGCGTACGCTGACTCGGACTTCGGA
GGTGATCTAGACGACCGGAAGCCGACTACGGGGATCGTCCTATTCCTAGC
TGGTGGGCCGGTGGACTGGAGGGCGGCTAAACAACCGCTGGTGGCCGCCT
CATCGGTGGAGGCGGAGTGCGTGGCGTTGTCCAGGGCTAGCCAGCTCATC
ATCCCCTTCCGGCACCTACTGAAGACTGTAAACCGTGCCCAGAAGGAGGC
AACGGTGCTTTACGAGGATAACTCCGGGGCTATATTGACTAGCCTTAGCT
CCACGATCACGCCCAGGACCAAGCATATTGATATCAAGTATCACCACATC
AGGTCGCTAATCCAGGATGGAGTCGTATAG