EsuBft990_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft990_7a-0001
Unique Name	EsuBft990_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:1467263..1471016 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI08
ProteomeId	EsuBft990_7
Protein domains	Coil
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	326
Evalue	1.7e-45
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft990_7a	EsuBft990_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 1467263..1471016 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_7a-0001-exon	agat-exon-86449	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1467263..1470010 +
EsuBft990_7a-0001-exon	EsuBft990_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1470344..1470438 +
EsuBft990_7a-0001-exon	agat-exon-86450	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1470595..1471016 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_7a-0001-exon	agat-five_prime_utr-15556	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 1467263..1467275 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_7a-0001-cds	EsuBft990_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 1467276..1470010 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_7a-0001	EsuBft990_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 1467276..1471016 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:1467263..1471016+
coding sequence from alignment at Scaffold_630:1467263..1471016+

spliced messenger RNA

>EsuBft990_7a-0001 ID=EsuBft990_7a-0001|Name=EsuBft990_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3265bp|location=Sequence derived from alignment at Scaffold_630:1467263..1471016+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGT
CTGCAGAAGGACTGGCGAGAATGATGACCATCATCGTTGACGCGTTCGGG
GAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCG
CGCAAAGGACAAGCCGACTACAACACCACAACCCCCGACGCCTCCACCGC
TGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGG
TACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAA
CTACAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNCGTGGGAGCCACAAGCACCTGTCTCGGACGGA
GGATCCGTCGAGCAACCAGGGGCGCTGATCCCCTTCGAAGGACCCTACGG
CAAGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGGTAC
CGTTGGGGTTCGTGACCGGAAAGGAAGACACCTGGGACAAAAGAGGGGCG
AAGCGGGTGCATGTTGGCCAGCCATTCCCCGGCTTGGAGAAGCGGCAGTG
CACGGTGCAACCGACGATAGGAGCAGGTGTGAAAAAGACGAGGTGCGCGA
TCGTCTTCCGCGGCAAAGGAACCGGCATCACCAAGGTGGAGAAGGCAGCA
TACGACAAGCGCGTAGATGTCTTCTTCCAGCCCAAGGTCTGGGCCGACAG
CGACTTCTGCATGCAATGGCTGGAGCGCTCTTTCGCCCGAGCCGAATGTG
CTGATGAGGAGGGCAAGGAGGATGGCAACACCGGCAATGTTGACGTGGAC
CAGCTGTCGGAGGACGCCTCTTCCAGCGATGATGAGAGCGACGGAGAAGA
TGACAACGATAAGGACTCGCTGACCCAGCTCGACGACGACGACGAGTTGT
CGCCTGAGGAAGAAACGCTGAAGATGGACATCCCGAACGGGTTTCGACTC
CAGGCGTCTCCACCACCGGCCCTCGATCAGTCGATAGTGAAGCGTGGGGT
TCTCGTGAAACTCGGGTTGGGTTGGTTCGGAGGGGTAATTAGTCGCAGAT
CTCACCCTGCTTCGCGGCAGGAGTACGACTACCGCATCATTCTGCACTGT
GACGAAAGTACACGTAGCATGAAGATGCTGTTAGAGTCGTACAGCACGGA
TGAAGACGCCGCAATTGGGGCGTGGGTTCTCCTAGAGGTGGACCCCAAGG
AAGGGAGCGGGAAGCGCAAAAGGGTGACAACCCCCAATGTTCGCCTCACG
GAGGTTGCAACATAA

protein sequence of EsuBft990_7a-0001

>EsuBft990_7 ID=EsuBft990_7|Name=EsuBft990_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=1083bp
MLYADDAGVVSRSAEGLARMMTIIVDAFGEFGLTVSEKKTETLLMRAKDK
PTTTPQPPTPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSR
GAWACLRRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXWEPQAPVSDGGSVEQPGALIPFEGPYGKWGR
FVKELRDNTDQVPLGFVTGKEDTWDKRGAKRVHVGQPFPGLEKRQCTVQP
TIGAGVKKTRCAIVFRGKGTGITKVEKAAYDKRVDVFFQPKVWADSDFCM
QWLERSFARAECADEEGKEDGNTGNVDVDQLSEDASSSDDESDGEDDNDK
DSLTQLDDDDELSPEEETLKMDIPNGFRLQASPPPALDQSIVKRGVLVKL
GLGWFGGVISRRSHPASRQEYDYRIILHCDESTRSMKMLLESYSTDEDAA
IGAWVLLEVDPKEGSGKRKRVTTPNVRLTEVAT

mRNA from alignment at Scaffold_630:1467263..1471016+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft990_7a-0001 ID=EsuBft990_7a-0001|Name=EsuBft990_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3754bp|location=Sequence derived from alignment at Scaffold_630:1467263..1471016+ (Ectocarpus subulatus male Bft15b)
GGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGT
CTGCAGAAGGACTGGCGAGAATGATGACCATCATCGTTGACGCGTTCGGG
GAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCG
CGCAAAGGACAAGCCGACTACAACACCACAACCCCCGACGCCTCCACCGC
TGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGG
TACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAA
CTACAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNCGTGGGAGCCACAAGCACCTGTCTCGGACGGA
GGATCCGTCGAGCAACCAGGGGCGCTGATCCCCTTCGAAGGACCCTACGG
CAAGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGGTAC
CGTTGGGGTTCGTGACCGGAAAGGAAGACACCTGGGACAAAAGAGGGGCG
AAGCGGGTGCATGTTGGCCAGCCATTCCCCGGCTTGGAGAAGCGGCAGTG
CACGGTGCAACCGACGATAGGAGCAGGTGTGAAAAAGACGAGGTGCGCGA
TCGTCTTCCGCGGCAAAGGAACCGGCATCACCAAGGTGGAGAAGGCAGCA
TACGACAAGCGCGTAGATGTCTTCTTCCAGCCCAAGGTCTGGGCCGACAG
CGACTTCTGCATGCAATGGCTGGAGCGCTCTTTCGCCCGAGCCGAATGGT
AAACGGAAAGGTGCCCGAGGAGCAGTCGCTTCTTCTCGCCGACAACCTGC
ACGGGCAGACGACTGAGGAATTCCGCAAGTATCTCCACAAGGAGTGCAAC
ACGCTTCTTTGGCACCTGCCGGCAGGCTGTACGGACGAGGTCCAGCCGAT
CGACGGCGGCTATGGACGGCGGCTGAAGGTGGCTGTGGGGGTGCAGCTGG
ACAAGTGACTGGAGAGCGGAGACAACATGCAAAAGTGGGAGGCCAAAGCA
CTGACGTGTTCCGAACGTCGCGTGTTGCTTAATCGAGGGCCTTTCCACAT
ATTCCTTCATGGATGTGGAGGATGGCGCCAGTGCTGATGAGGAGGGCAAG
GAGGATGGCAACACCGGCAATGTTGACGTGGACCAGCTGTCGGAGGACGC
CTCTTCCAGCGATGATGAGAGCGACGGTAAGTGATATTGTATTTCGCGTT
CATTCGGAGCACAGAAGAATTACCCTTGCGGAAGAAATCTCCTCTTGTTG
ACACATTAATGAGTGTTGGAATATTGTCCCCGCTTCAGGAATCGCCACAC
CAATAGACGATGCCTCCGCTGTGCCTTGTCAGGAGAAGATGACAACGATA
AGGACTCGCTGACCCAGCTCGACGACGACGACGAGTTGTCGCCTGAGGAA
GAAACGCTGAAGATGGACATCCCGAACGGGTTTCGACTCCAGGCGTCTCC
ACCACCGGCCCTCGATCAGTCGATAGTGAAGCGTGGGGTTCTCGTGAAAC
TCGGGTTGGGTTGGTTCGGAGGGGTAATTAGTCGCAGATCTCACCCTGCT
TCGCGGCAGGAGTACGACTACCGCATCATTCTGCACTGTGACGAAAGTAC
ACGTAGCATGAAGATGCTGTTAGAGTCGTACAGCACGGATGAAGACGCCG
CAATTGGGGCGTGGGTTCTCCTAGAGGTGGACCCCAAGGAAGGGAGCGGG
AAGCGCAAAAGGGTGACAACCCCCAATGTTCGCCTCACGGAGGTTGCAAC
ATAA

Coding sequence (CDS) from alignment at Scaffold_630:1467263..1471016+

>EsuBft990_7a-0001 ID=EsuBft990_7a-0001|Name=EsuBft990_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=3252bp|location=Sequence derived from alignment at Scaffold_630:1467263..1471016+ (Ectocarpus subulatus male Bft15b)
ATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACT
GGCGAGAATGATGACCATCATCGTTGACGCGTTCGGGGAGTTCGGGCTAA
CGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGACAAG
CCGACTACAACACCACAACCCCCGACGCCTCCACCGCTGACCATCGAAGC
CGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCC
TCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGA
GGAGCGTGGGCGTGCCTCAGGCGATATNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNCGTGGGAGCCACAAGCACCTGTCTCGGACGGAGGATCCGTCGAGC
AACCAGGGGCGCTGATCCCCTTCGAAGGACCCTACGGCAAGTGGGGGCGC
TTCGTGAAGGAGCTGAGGGACAACACCGACCAGGTACCGTTGGGGTTCGT
GACCGGAAAGGAAGACACCTGGGACAAAAGAGGGGCGAAGCGGGTGCATG
TTGGCCAGCCATTCCCCGGCTTGGAGAAGCGGCAGTGCACGGTGCAACCG
ACGATAGGAGCAGGTGTGAAAAAGACGAGGTGCGCGATCGTCTTCCGCGG
CAAAGGAACCGGCATCACCAAGGTGGAGAAGGCAGCATACGACAAGCGCG
TAGATGTCTTCTTCCAGCCCAAGGTCTGGGCCGACAGCGACTTCTGCATG
CAATGGCTGGAGCGCTCTTTCGCCCGAGCCGAATGTGCTGATGAGGAGGG
CAAGGAGGATGGCAACACCGGCAATGTTGACGTGGACCAGCTGTCGGAGG
ACGCCTCTTCCAGCGATGATGAGAGCGACGGAGAAGATGACAACGATAAG
GACTCGCTGACCCAGCTCGACGACGACGACGAGTTGTCGCCTGAGGAAGA
AACGCTGAAGATGGACATCCCGAACGGGTTTCGACTCCAGGCGTCTCCAC
CACCGGCCCTCGATCAGTCGATAGTGAAGCGTGGGGTTCTCGTGAAACTC
GGGTTGGGTTGGTTCGGAGGGGTAATTAGTCGCAGATCTCACCCTGCTTC
GCGGCAGGAGTACGACTACCGCATCATTCTGCACTGTGACGAAAGTACAC
GTAGCATGAAGATGCTGTTAGAGTCGTACAGCACGGATGAAGACGCCGCA
ATTGGGGCGTGGGTTCTCCTAGAGGTGGACCCCAAGGAAGGGAGCGGGAA
GCGCAAAAGGGTGACAACCCCCAATGTTCGCCTCACGGAGGTTGCAACAT
AA