EsuBft990_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft990_6a-0001
Unique NameEsuBft990_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1466360..1467219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI082415-PA
ProteomeIdEsuBft990_6
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length86
Evalue6.85e-19
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,420TT@6656|Arthropoda,3SQX5@50557|Insecta,3EDFZ@33342|Paraneoptera
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft990_6aEsuBft990_6aEctocarpus subulatus male Bft15bgeneScaffold_630 1466360..1467219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_6a-0001-exonEsuBft990_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1466360..1467219 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_6a-0001-exonagat-five_prime_utr-15555Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1466360..1466387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_6a-0001-cdsEsuBft990_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1466388..1466795 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_6a-0001-exonagat-three_prime_utr-23852Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1466796..1467219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_6a-0001EsuBft990_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1466388..1466795 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft990_6a-0001 ID=EsuBft990_6a-0001|Name=EsuBft990_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=860bp|location=Sequence derived from alignment at Scaffold_630:1466360..1467219+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTCGAAGAATTCTACAAAGATCGCGACATGCGAGGACTGTACCAACACC
TCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGGGGGACAGCAGTTC
GTCGCGGATGAGAACNCACGGGCAACGAAAGGCCTCAAAAACTGGAAGGC
ACCCGGCCATGACTCCCTCCCTACCGAGTTGCTCAAGATCGATGACGACG
AACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAAC
GGAGGAGATATTCCGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTA
CAAGAACGGTGACCAGTCCAACTGTAACAACTACAGGGGGGTTTCGCTAC
TATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGC
GCCTTCTGCAAAGCCAACAACATCGTCCCGGAGTAACAGTGCGAATTTCG
ACCCGGGCGATCCACCGTCGATATGCTGTTAGTCGTGCGCCGCCTCCAGG
AGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTG
AACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGC
CAGGGCCGGGATTCCCGCGAAGCTGATCTAAGTCATCCGCCAATTCCACG
ATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCGGACTGG
TTCTTGGTGATACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTCCT
GTTCAAATCCTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAG
CGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGA
CGGAAGCCGG
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protein sequence of EsuBft990_6a-0001

>EsuBft990_6 ID=EsuBft990_6|Name=EsuBft990_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MRGLYQHLKRSVGLSGRQAGGQQFVADENXRATKGLKNWKAPGHDSLPTE
LLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKNGDQSNCN
NYRGVSLLSHVGKVPIKIITNRLSAFCKANNIVPE
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mRNA from alignment at Scaffold_630:1466360..1467219+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft990_6a-0001 ID=EsuBft990_6a-0001|Name=EsuBft990_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=860bp|location=Sequence derived from alignment at Scaffold_630:1466360..1467219+ (Ectocarpus subulatus male Bft15b)
GCTCGAAGAATTCTACAAAGATCGCGACATGCGAGGACTGTACCAACACC
TCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGGGGGACAGCAGTTC
GTCGCGGATGAGAACNCACGGGCAACGAAAGGCCTCAAAAACTGGAAGGC
ACCCGGCCATGACTCCCTCCCTACCGAGTTGCTCAAGATCGATGACGACG
AACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAAC
GGAGGAGATATTCCGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTA
CAAGAACGGTGACCAGTCCAACTGTAACAACTACAGGGGGGTTTCGCTAC
TATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGC
GCCTTCTGCAAAGCCAACAACATCGTCCCGGAGTAACAGTGCGAATTTCG
ACCCGGGCGATCCACCGTCGATATGCTGTTAGTCGTGCGCCGCCTCCAGG
AGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTG
AACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGC
CAGGGCCGGGATTCCCGCGAAGCTGATCTAAGTCATCCGCCAATTCCACG
ATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCGGACTGG
TTCTTGGTGATACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTCCT
GTTCAAATCCTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAG
CGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGA
CGGAAGCCGG
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Coding sequence (CDS) from alignment at Scaffold_630:1466360..1467219+

>EsuBft990_6a-0001 ID=EsuBft990_6a-0001|Name=EsuBft990_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_630:1466360..1467219+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAG
ACAAGCGGGGGGACAGCAGTTCGTCGCGGATGAGAACNCACGGGCAACGA
AAGGCCTCAAAAACTGGAAGGCACCCGGCCATGACTCCCTCCCTACCGAG
TTGCTCAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCATAC
CATCCTCGTCAAGGTGTGGAACGGAGGAGATATTCCGCGAGAGTGGAAGG
ATGCAACCATCAAGGTGCTGTACAAGAACGGTGACCAGTCCAACTGTAAC
AACTACAGGGGGGTTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAA
GATCATCACCAACCGTCTAAGCGCCTTCTGCAAAGCCAACAACATCGTCC
CGGAGTAA
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