EsuBft990_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft990_5a-0001
Unique NameEsuBft990_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1460298..1462552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft990_5
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length225
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft990_5aEsuBft990_5aEctocarpus subulatus male Bft15bgeneScaffold_630 1460298..1462552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_5a-0001-exonEsuBft990_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1460298..1462552 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_5a-0001-exonagat-three_prime_utr-23851Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1460298..1461674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_5a-0001-cdsEsuBft990_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1461675..1462394 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_5a-0001-exonagat-five_prime_utr-15554Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1462395..1462552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft990_5a-0001EsuBft990_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1461675..1462394 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft990_5a-0001 ID=EsuBft990_5a-0001|Name=EsuBft990_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2255bp|location=Sequence derived from alignment at Scaffold_630:1460298..1462552- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATCATCATTAGGTAGAGGGTCAACACTCATCACGGCGGCCGAGGAACCTT
GGCTCCACGAAGGGGTCACCGTCGAACGCAACGCCGAAAAAGCTGCAGCA
CGCGAACAGCAGACGAACTCCTAGCATTCGTGGAAGATACCGAAAAGAAA
TCATCTCCATGCACCGCCGGCGTGTGCGCGAACGCACGCTTGTCCAACAC
ATCCCACATATCATCCAGACACGAAGCATGTCGCCCAAAAGGGGCTTCCA
TGGAGAGCTGCTCATCCTTGTACACCTGCCCAGACACTACCGGAAACTGC
TTCAACATGGAGTCTCGAACAGCTATCTGCACTTGCGCATCCGAAGACTT
GAAGGCGTGGTGGGAAACCATGACGGTCATGGCCAGAGCCTTATAGCGAC
GAATGTATTCTCCGTAAGTCTCGCCGTTGGATACGCCAAAACTGCGAAGA
CGATCAATCCCCGAGATCTTGTCTTGAGTGTCCCAGGCAGCCGTCAATTT
CTGGATGAAGAAGGCGTACGTCGAGGGCCCTGCCGGTTCCTTGCGCAGAT
GGTTTTCTACTTGTCACCGTGGCCTGACCTCCGTCGCCCTTTTCCGCCGC
GACTGCTGTCAGTGCTGGTCGCCCTGCTATTGCCCCCGCTCTGGTTCTGG
CTCCGGCTGCGGCTACGCTTAGACGGAGGCGTGTTTTTCCCACGACGGTC
TCCGCTCCGGCTGCGCCCACGCCAAGACGAAGGATTGGTGCGCTGTTGTT
CTGCGCTCCGACTCCTGCTCCGGCGATGGCGACTCGCCGGCGAAGACCTG
GTAGGCTGGTTCTCCATGGCTCGCCCTCGCCTGTTATCTCCCACGCCGCG
CCCTCGCGAAGACTGGGTGGAGCGGTGATGGTAGTCCGTCCCGCTCTTGG
CCGTCGAATCCCGGTCGCTCCAACGGTTCTTGCAGGTCTTGGACACGGGA
GCCGCCGACCTACTGAAGTCCTTGTCCTCTCCAGAACCATGTTCAGGGCG
TGAAGAGGCCTGCCGGGGGGCTTGCAGATCGTGCTTGAAGTCGTTGGTCG
AAGCAGCACGAGCAAGAGGCAGCTGGAGTCCTCCCTCCTGGGTCACCACC
GACGTTCCTTGAGGACCTTCTGGAAAGGTGGCACGACGGAGAGCGAACAA
AAGCTGGAACACGGACTGCCGCGAAGAAGGCGGAAGTTTCGCGAGGTACG
GTGTGTGGTAGATGTGTCCGAATGCAACGGTGTGCGGTGGGGGGAATTGT
GCACGGACAAGTTGTTTGATGCCAGCCCATGCAAAAACAGCTGCCAATCT
GTCCTCATCGTGGAAGGTGACACCTTCTGCAGGCATCTCCAGCGGGCGGG
ACAGGAACGCTGAATCTCCAACGTGGAACTCGTACACCGTGGTTGCCGCC
GCAAACAATGCTCCGTCTTCAGCAACGGCTGGAAGACCCAAAGTCACCGA
AAACTCCGGAGTCGCTGTCCCTTCCGCTCCTTCTCGTTCGTCGGAGAAGC
CGCCACCTCCCGCTCCTTCTCGTGCGGCGAGGCGGTACGATGGGAACCAA
GGTGCACCTGGGATTGCGTGGGGGGGGGGACGATAACCCGGCGACGGGGG
TGGGGGGCTGCTCGCGGGTCCTGGTGGCGGGGCTCCAGCTCCTTCAGCCG
CGATCGGAGCGCCCCCTGCTTCGCCCTAGCCGCTTGGAGATACGCCTCAC
GCTCCGCCAGAACAGCCGCACGCTCCTCCTCCTGCTTCCTCGCCGCAGCA
GCCCGAACAGCCTCACGCTCCTCCTCCTGCTTCCTCGCCGCAGCAGCCGG
AGGATATGCGAAGGTGTACCGATTCAGGAAAAAGTCAATCGACGGATACC
CTGCGAATCGGGTCCTCCTCAACACTCTTCACCCACTCTTCACCCACAGA
ATTTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGGNCGGAGGATAT
GCGAAGGTGTACCGATTCAGGAAAAAGTCAATCGACGGATACCCTGCGAA
TCGGGTCCTCCTCAACACTCTTCACCCACTCTTCACCCACAGAATTTACC
CTCAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATGGAAGTGTC
ACAAGGTACTTTTTAGGATCGACTCCAGAGGTGTTCTCAGGACTGGCACA
CATTGTGTCCGTCGGAAAATGTCCAAGTCAGGAGAAAAAATGTGCACCGA
AGGAGATTCGTACCCGTATCCTGCCGCTGACGCCATGTGCGAAGGTATAC
CGATT
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protein sequence of EsuBft990_5a-0001

>EsuBft990_5 ID=EsuBft990_5|Name=EsuBft990_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=239bp
MHRRRVRERTLVQHIPHIIQTRSMSPKRGFHGELLILVHLPRHYRKLLQH
GVSNSYLHLRIRRLEGVVGNHDGHGQSLIATNVFSVSLAVGYAKTAKTIN
PRDLVLSVPGSRQFLDEEGVRRGPCRFLAQMVFYLSPWPDLRRPFPPRLL
SVLVALLLPPLWFWLRLRLRLDGGVFFPRRSPLRLRPRQDEGLVRCCSAL
RLLLRRWRLAGEDLVGWFSMARPRLLSPTPRPREDWVER
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mRNA from alignment at Scaffold_630:1460298..1462552-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft990_5a-0001 ID=EsuBft990_5a-0001|Name=EsuBft990_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2255bp|location=Sequence derived from alignment at Scaffold_630:1460298..1462552- (Ectocarpus subulatus male Bft15b)
ATCATCATTAGGTAGAGGGTCAACACTCATCACGGCGGCCGAGGAACCTT
GGCTCCACGAAGGGGTCACCGTCGAACGCAACGCCGAAAAAGCTGCAGCA
CGCGAACAGCAGACGAACTCCTAGCATTCGTGGAAGATACCGAAAAGAAA
TCATCTCCATGCACCGCCGGCGTGTGCGCGAACGCACGCTTGTCCAACAC
ATCCCACATATCATCCAGACACGAAGCATGTCGCCCAAAAGGGGCTTCCA
TGGAGAGCTGCTCATCCTTGTACACCTGCCCAGACACTACCGGAAACTGC
TTCAACATGGAGTCTCGAACAGCTATCTGCACTTGCGCATCCGAAGACTT
GAAGGCGTGGTGGGAAACCATGACGGTCATGGCCAGAGCCTTATAGCGAC
GAATGTATTCTCCGTAAGTCTCGCCGTTGGATACGCCAAAACTGCGAAGA
CGATCAATCCCCGAGATCTTGTCTTGAGTGTCCCAGGCAGCCGTCAATTT
CTGGATGAAGAAGGCGTACGTCGAGGGCCCTGCCGGTTCCTTGCGCAGAT
GGTTTTCTACTTGTCACCGTGGCCTGACCTCCGTCGCCCTTTTCCGCCGC
GACTGCTGTCAGTGCTGGTCGCCCTGCTATTGCCCCCGCTCTGGTTCTGG
CTCCGGCTGCGGCTACGCTTAGACGGAGGCGTGTTTTTCCCACGACGGTC
TCCGCTCCGGCTGCGCCCACGCCAAGACGAAGGATTGGTGCGCTGTTGTT
CTGCGCTCCGACTCCTGCTCCGGCGATGGCGACTCGCCGGCGAAGACCTG
GTAGGCTGGTTCTCCATGGCTCGCCCTCGCCTGTTATCTCCCACGCCGCG
CCCTCGCGAAGACTGGGTGGAGCGGTGATGGTAGTCCGTCCCGCTCTTGG
CCGTCGAATCCCGGTCGCTCCAACGGTTCTTGCAGGTCTTGGACACGGGA
GCCGCCGACCTACTGAAGTCCTTGTCCTCTCCAGAACCATGTTCAGGGCG
TGAAGAGGCCTGCCGGGGGGCTTGCAGATCGTGCTTGAAGTCGTTGGTCG
AAGCAGCACGAGCAAGAGGCAGCTGGAGTCCTCCCTCCTGGGTCACCACC
GACGTTCCTTGAGGACCTTCTGGAAAGGTGGCACGACGGAGAGCGAACAA
AAGCTGGAACACGGACTGCCGCGAAGAAGGCGGAAGTTTCGCGAGGTACG
GTGTGTGGTAGATGTGTCCGAATGCAACGGTGTGCGGTGGGGGGAATTGT
GCACGGACAAGTTGTTTGATGCCAGCCCATGCAAAAACAGCTGCCAATCT
GTCCTCATCGTGGAAGGTGACACCTTCTGCAGGCATCTCCAGCGGGCGGG
ACAGGAACGCTGAATCTCCAACGTGGAACTCGTACACCGTGGTTGCCGCC
GCAAACAATGCTCCGTCTTCAGCAACGGCTGGAAGACCCAAAGTCACCGA
AAACTCCGGAGTCGCTGTCCCTTCCGCTCCTTCTCGTTCGTCGGAGAAGC
CGCCACCTCCCGCTCCTTCTCGTGCGGCGAGGCGGTACGATGGGAACCAA
GGTGCACCTGGGATTGCGTGGGGGGGGGGACGATAACCCGGCGACGGGGG
TGGGGGGCTGCTCGCGGGTCCTGGTGGCGGGGCTCCAGCTCCTTCAGCCG
CGATCGGAGCGCCCCCTGCTTCGCCCTAGCCGCTTGGAGATACGCCTCAC
GCTCCGCCAGAACAGCCGCACGCTCCTCCTCCTGCTTCCTCGCCGCAGCA
GCCCGAACAGCCTCACGCTCCTCCTCCTGCTTCCTCGCCGCAGCAGCCGG
AGGATATGCGAAGGTGTACCGATTCAGGAAAAAGTCAATCGACGGATACC
CTGCGAATCGGGTCCTCCTCAACACTCTTCACCCACTCTTCACCCACAGA
ATTTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGGNCGGAGGATAT
GCGAAGGTGTACCGATTCAGGAAAAAGTCAATCGACGGATACCCTGCGAA
TCGGGTCCTCCTCAACACTCTTCACCCACTCTTCACCCACAGAATTTACC
CTCAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATGGAAGTGTC
ACAAGGTACTTTTTAGGATCGACTCCAGAGGTGTTCTCAGGACTGGCACA
CATTGTGTCCGTCGGAAAATGTCCAAGTCAGGAGAAAAAATGTGCACCGA
AGGAGATTCGTACCCGTATCCTGCCGCTGACGCCATGTGCGAAGGTATAC
CGATT
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Coding sequence (CDS) from alignment at Scaffold_630:1460298..1462552-

>EsuBft990_5a-0001 ID=EsuBft990_5a-0001|Name=EsuBft990_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=720bp|location=Sequence derived from alignment at Scaffold_630:1460298..1462552- (Ectocarpus subulatus male Bft15b)
ATGCACCGCCGGCGTGTGCGCGAACGCACGCTTGTCCAACACATCCCACA
TATCATCCAGACACGAAGCATGTCGCCCAAAAGGGGCTTCCATGGAGAGC
TGCTCATCCTTGTACACCTGCCCAGACACTACCGGAAACTGCTTCAACAT
GGAGTCTCGAACAGCTATCTGCACTTGCGCATCCGAAGACTTGAAGGCGT
GGTGGGAAACCATGACGGTCATGGCCAGAGCCTTATAGCGACGAATGTAT
TCTCCGTAAGTCTCGCCGTTGGATACGCCAAAACTGCGAAGACGATCAAT
CCCCGAGATCTTGTCTTGAGTGTCCCAGGCAGCCGTCAATTTCTGGATGA
AGAAGGCGTACGTCGAGGGCCCTGCCGGTTCCTTGCGCAGATGGTTTTCT
ACTTGTCACCGTGGCCTGACCTCCGTCGCCCTTTTCCGCCGCGACTGCTG
TCAGTGCTGGTCGCCCTGCTATTGCCCCCGCTCTGGTTCTGGCTCCGGCT
GCGGCTACGCTTAGACGGAGGCGTGTTTTTCCCACGACGGTCTCCGCTCC
GGCTGCGCCCACGCCAAGACGAAGGATTGGTGCGCTGTTGTTCTGCGCTC
CGACTCCTGCTCCGGCGATGGCGACTCGCCGGCGAAGACCTGGTAGGCTG
GTTCTCCATGGCTCGCCCTCGCCTGTTATCTCCCACGCCGCGCCCTCGCG
AAGACTGGGTGGAGCGGTGA
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