EsuBft990_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft990_2a-0001
Unique Name	EsuBft990_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:1419232..1420314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft990_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	108
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft990_2a	EsuBft990_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 1419232..1420314 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_2a-0001-exon	EsuBft990_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1419232..1420314 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_2a-0001-exon	agat-five_prime_utr-15552	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 1419232..1419277 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_2a-0001-cds	EsuBft990_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 1419278..1419841 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_2a-0001-exon	agat-three_prime_utr-23847	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 1419842..1420314 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft990_2a-0001	EsuBft990_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 1419278..1419841 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:1419232..1420314+
coding sequence from alignment at Scaffold_630:1419232..1420314+

spliced messenger RNA

>EsuBft990_2a-0001 ID=EsuBft990_2a-0001|Name=EsuBft990_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1083bp|location=Sequence derived from alignment at Scaffold_630:1419232..1420314+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAAGGAAATCCAGTTATTAGAACAAGAAGCAATTTTAGTTTAGACATGG
AAGGCGAGGAGAAAGACAAGAAGCAGAAGAAGGAGTTGGAGCTGGGTCTG
GCTGAGGCGAAGGCGGAGATATCAAAGCTGAAACAGGCCCACAAAGAGGT
GGAGGAAGAATGGAAGAAAGAAGCGGCTATGCATAGGGCCACTGCTGCAG
ATGCGGCGCGTGCAGCTGCAGACGCGGCCCGTACAGGGCCCTCTGGTGGA
GGATCAGGACCCGGGTATCAAACGGTGAGCATGGCAGACGGCGGTAGCCA
GTTGATGAGCGGTCGTTTTGGCACTCGAAACCCGCCGAAGCACCCGAACG
AACCGGGGAAGTTTATGAGCTGGTCACGGAGGATGCGGACTTTCCTCGCT
GTAGAAGGTCTGGAACAAACCCTTGATCACCAACCCCCTACTGGCTACGT
CCACATCATCGGCTGTCCGGATCGCAACTACCTAAACCGCATTCATGGAG
CGCCGCTGGTGACAGCACACTTGCGGGCGTGGGGGTACCTTGTGGAATCA
ACTAGCGGTTCGGACATCGAAGAAACGCTGTTTGCGTGTAGCTGCGTGCC
GGAGGCGTGAACCGCTATCCGTGAATGGTCTTTGCCCACTACTGATGCTG
AGCAGAGACTGCTTGAGCGACAGTTGGAGACTGTTGAGATGTCCCCTGGC
GAAAACCCGAAGCTTTTCTTCGCCAGAGTCGACGGTATCGTCAACACCAT
GCGAGCTGTCGGCATTGAAAAATCCGAACGGCAAATTGTGCAAACAATTG
TCCGCCAGCTTTCGTCTGATTACGATGTCGAACGCAAGACCACCCTATCC
GATTCCGACATCTCTCGTGCGGGAGTTGAAAGCATTGTTCGCAAGGCGTA
TGCTAACATTGTTGCCAAGCAGCTTGAGAAGGTGAAAGTGTCTCCGTCGA
CGTCGGTGCAGCCGGGCCACGATCCTCACGCGCTTGCTGTTAGTGGTTTT
AGGTCCGGCGGCAGCGGCGGCGGTAGCAGCGGCAACGGCGGTAGCGGTGG
CGGTGGCAACGGCGGTAACGGCGGTAGCGGCGG

protein sequence of EsuBft990_2a-0001

>EsuBft990_2 ID=EsuBft990_2|Name=EsuBft990_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MEGEEKDKKQKKELELGLAEAKAEISKLKQAHKEVEEEWKKEAAMHRATA
ADAARAAADAARTGPSGGGSGPGYQTVSMADGGSQLMSGRFGTRNPPKHP
NEPGKFMSWSRRMRTFLAVEGLEQTLDHQPPTGYVHIIGCPDRNYLNRIH
GAPLVTAHLRAWGYLVESTSGSDIEETLFACSCVPEA

mRNA from alignment at Scaffold_630:1419232..1420314+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft990_2a-0001 ID=EsuBft990_2a-0001|Name=EsuBft990_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1083bp|location=Sequence derived from alignment at Scaffold_630:1419232..1420314+ (Ectocarpus subulatus male Bft15b)
TCAAGGAAATCCAGTTATTAGAACAAGAAGCAATTTTAGTTTAGACATGG
AAGGCGAGGAGAAAGACAAGAAGCAGAAGAAGGAGTTGGAGCTGGGTCTG
GCTGAGGCGAAGGCGGAGATATCAAAGCTGAAACAGGCCCACAAAGAGGT
GGAGGAAGAATGGAAGAAAGAAGCGGCTATGCATAGGGCCACTGCTGCAG
ATGCGGCGCGTGCAGCTGCAGACGCGGCCCGTACAGGGCCCTCTGGTGGA
GGATCAGGACCCGGGTATCAAACGGTGAGCATGGCAGACGGCGGTAGCCA
GTTGATGAGCGGTCGTTTTGGCACTCGAAACCCGCCGAAGCACCCGAACG
AACCGGGGAAGTTTATGAGCTGGTCACGGAGGATGCGGACTTTCCTCGCT
GTAGAAGGTCTGGAACAAACCCTTGATCACCAACCCCCTACTGGCTACGT
CCACATCATCGGCTGTCCGGATCGCAACTACCTAAACCGCATTCATGGAG
CGCCGCTGGTGACAGCACACTTGCGGGCGTGGGGGTACCTTGTGGAATCA
ACTAGCGGTTCGGACATCGAAGAAACGCTGTTTGCGTGTAGCTGCGTGCC
GGAGGCGTGAACCGCTATCCGTGAATGGTCTTTGCCCACTACTGATGCTG
AGCAGAGACTGCTTGAGCGACAGTTGGAGACTGTTGAGATGTCCCCTGGC
GAAAACCCGAAGCTTTTCTTCGCCAGAGTCGACGGTATCGTCAACACCAT
GCGAGCTGTCGGCATTGAAAAATCCGAACGGCAAATTGTGCAAACAATTG
TCCGCCAGCTTTCGTCTGATTACGATGTCGAACGCAAGACCACCCTATCC
GATTCCGACATCTCTCGTGCGGGAGTTGAAAGCATTGTTCGCAAGGCGTA
TGCTAACATTGTTGCCAAGCAGCTTGAGAAGGTGAAAGTGTCTCCGTCGA
CGTCGGTGCAGCCGGGCCACGATCCTCACGCGCTTGCTGTTAGTGGTTTT
AGGTCCGGCGGCAGCGGCGGCGGTAGCAGCGGCAACGGCGGTAGCGGTGG
CGGTGGCAACGGCGGTAACGGCGGTAGCGGCGG

Coding sequence (CDS) from alignment at Scaffold_630:1419232..1420314+

>EsuBft990_2a-0001 ID=EsuBft990_2a-0001|Name=EsuBft990_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_630:1419232..1420314+ (Ectocarpus subulatus male Bft15b)
ATGGAAGGCGAGGAGAAAGACAAGAAGCAGAAGAAGGAGTTGGAGCTGGG
TCTGGCTGAGGCGAAGGCGGAGATATCAAAGCTGAAACAGGCCCACAAAG
AGGTGGAGGAAGAATGGAAGAAAGAAGCGGCTATGCATAGGGCCACTGCT
GCAGATGCGGCGCGTGCAGCTGCAGACGCGGCCCGTACAGGGCCCTCTGG
TGGAGGATCAGGACCCGGGTATCAAACGGTGAGCATGGCAGACGGCGGTA
GCCAGTTGATGAGCGGTCGTTTTGGCACTCGAAACCCGCCGAAGCACCCG
AACGAACCGGGGAAGTTTATGAGCTGGTCACGGAGGATGCGGACTTTCCT
CGCTGTAGAAGGTCTGGAACAAACCCTTGATCACCAACCCCCTACTGGCT
ACGTCCACATCATCGGCTGTCCGGATCGCAACTACCTAAACCGCATTCAT
GGAGCGCCGCTGGTGACAGCACACTTGCGGGCGTGGGGGTACCTTGTGGA
ATCAACTAGCGGTTCGGACATCGAAGAAACGCTGTTTGCGTGTAGCTGCG
TGCCGGAGGCGTGA